View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14642_low_5 (Length: 544)
Name: NF14642_low_5
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14642_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 234 - 529
Target Start/End: Original strand, 8403091 - 8403387
Alignment:
| Q |
234 |
ttgctcaataatgaattaaaattctcaaattgcaatgcaggcaaaatataatgtttatcgtcaacattatcattttagaactatgtttgaaccatgccgc |
333 |
Q |
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| T |
8403091 |
ttgctcaataatgaattaaaattctcaaattgcaatggaggcaaaagataatggttatcgtcaacattatcattttagaactatgtttgaaccatgccgc |
8403190 |
T |
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| Q |
334 |
tattcatttgtcccttttgctcattaacatttccaagattcatgtgaatatgaca--ttttttgttaattagaggatacatcatttttgttcatatcatg |
431 |
Q |
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| T |
8403191 |
tattcatttgtcccttttgctcattaacatttccaagattcatgtgaatatggcattttttttgttaattaggggatacatca-ttttgttcatatcatg |
8403289 |
T |
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| Q |
432 |
gagaatatttccctgtccgggttgtgtcaacgcccaacacttggttcaatctggccatctaggtggccaaaattgatcaagcattgtaatatatattc |
529 |
Q |
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| T |
8403290 |
gagaatatttccctatccgggttgcgtcaacgcccaacacttggttcaatctggccatctaggtggccaaaattgatcaagcattgttatatatattc |
8403387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 8402462 - 8402635
Alignment:
| Q |
1 |
ttctaaccgcgtcaatgagtgaatagaagatccatgatattgcattcttggttaaagaacctgtgataaactcatttttaaccattgcaaattcccatat |
100 |
Q |
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| T |
8402462 |
ttctaaccgagtcaatgagtgaatagaagagccatgatattgcattcttggttaaagaacctgtgataaactcatttt-aaccattgcaaattcccatat |
8402560 |
T |
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| Q |
101 |
ttttgtggagaattttgcaatgtattcaatggtcgattccccaatatcccctatgaacatgggtaatttgggata |
175 |
Q |
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| T |
8402561 |
ttttgtggagaattttgcaatgtattcaatgctcgattccccaatatcccctatgaacatgggtaatttgggata |
8402635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 32 - 203
Target Start/End: Original strand, 8428626 - 8428796
Alignment:
| Q |
32 |
ccatgatattgcattcttggttaaagaacctgtgataaactcatttttaaccattgcaaattcccatatttttgtggagaattttgcaatgtattcaatg |
131 |
Q |
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| T |
8428626 |
ccatgagaatgcattcttggttaaagaacttgggataaactcatttt-aactattgcaaattcccatatttttgtggagaattttgcaatgtgtttaatg |
8428724 |
T |
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| Q |
132 |
gtcgattccccaatatcccctatgaacatgggtaatttgggatatttagcgcctcttgggacttcaatatgt |
203 |
Q |
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| T |
8428725 |
attgattccccaatatcccctatgaacatggccaatttgggatatttagcgcctcttgggacttcaacatgt |
8428796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 254 - 515
Target Start/End: Original strand, 8428991 - 8429257
Alignment:
| Q |
254 |
attctcaaattgcaatgcaggcaaaatataatgtttatcgtcaacattatcattttagaactatgtttgaaccatgccgctattcatttgtcccttttgc |
353 |
Q |
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| T |
8428991 |
attctcatattgcaatggtggcaaacgataatggttaatgtcgagattggcattttagaactatgtttgaaccatgtcgctattcatttgtctcctatgc |
8429090 |
T |
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| Q |
354 |
tcattaacatttccaagattcatg----tgaatatgacattttttgttaattagaggatacatcatttttgttcatatcatggagaatatttccctgtcc |
449 |
Q |
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| T |
8429091 |
tcattaacattcccaagattcatgcatatgaatatggcatttttcgtcaattaggggataaatga-ttttgt---tatcctggagagtgtttccctatcc |
8429186 |
T |
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| Q |
450 |
gggttgtgtcaacgcccaacacttggttcaatctggcc-----atctaggtggccaaaattgatcaagcat |
515 |
Q |
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| T |
8429187 |
aggttgtgtcaatgcctaacacttggttcaatgtgaccacctaatctaggtggccaaaacagatcaagcat |
8429257 |
T |
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