View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14642_low_52 (Length: 248)
Name: NF14642_low_52
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14642_low_52 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 42281306 - 42281072
Alignment:
| Q |
1 |
acgatacaattcttcctaggatatagattataggatattgagacactaattgtcttcaccccattgattaaaatatnnnnnnnnnn-ttgctaactattt |
99 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
42281306 |
acgatacaattcttcctaggatatag-------gatattgagacactaattgtcttcatcccattgattaaaatataaaaaaaaaaattgctaactattt |
42281214 |
T |
|
| Q |
100 |
ttattcttatgctttttcaggtactaatggtactagagatatttgtatcagctcatggatttaccctcttccttgaatgctactagagatacatttaagt |
199 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
42281213 |
ttattcttatcctttttcaggtactaatggtactagagatatttgtatcagctcatggatttaccctcttccttgaatgctactagatatacatttaagt |
42281114 |
T |
|
| Q |
200 |
attgaatctgctaggtctcttgatcaatctcttaggcctttg |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42281113 |
attgaatctgctaggtctcttgatcaatctcttaggcctttg |
42281072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 42254945 - 42254712
Alignment:
| Q |
1 |
acgatacaattcttcctaggatatagattataggatattgagacactaattgtcttcaccccattgattaaaatatnnnnnnnnnnttgctaactatttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
42254945 |
acgatacaattcttcctaggatatag-------gatattgagacactaattgtcttcatcccattgattaaaaatataaaagaaaattgctaactatttt |
42254853 |
T |
|
| Q |
101 |
tattcttatgctttttcaggtactaatggtactagagatatttgtatcagctcatggatttaccctcttccttgaatgctactagagatacatttaagta |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42254852 |
tattcttatcctttttcaggtactaatggtactagagatatttgtatcagctcatggatttaccctcttccttgaatgcttatagagatacatttaagta |
42254753 |
T |
|
| Q |
201 |
ttgaatctgctaggtctcttgatcaatctcttaggcctttg |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42254752 |
ttgaatctgctaggtctcttgatcaatctcttaggcctttg |
42254712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 95 - 241
Target Start/End: Complemental strand, 42269447 - 42269301
Alignment:
| Q |
95 |
tatttttattcttatgctttttcaggtactaatggtactagagatatttgtatcagctcatggatttaccctcttccttgaatgctactagagatacatt |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
42269447 |
tatttttattcttatgctttttcaggtactaatggtactagagatatttgtatcagctcatggatttaccctcttccttgaatgcttctagagatacatt |
42269348 |
T |
|
| Q |
195 |
taagtattgaatctgctaggtctcttgatcaatctcttaggcctttg |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42269347 |
taagtattgaatctgctaggtctcttgatcaatctcttgggcctttg |
42269301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 42260464 - 42260240
Alignment:
| Q |
1 |
acgatacaattcttcctaggatatagattataggatattgagacactaattgtcttcaccccattgattaaaatatnnnnnnnnnnttgctaactatttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| || |||| |||||| |
|
|
| T |
42260464 |
acgatacaattcttcctaggatatag-------gatattgagacactaattgtcttcgatccattgattaaaatataaaagaaaa-ttcctaattatttt |
42260373 |
T |
|
| Q |
101 |
tattcttatgctttttcaggtactaatggtactagagatatttgtatcagctcatggatttaccctcttccttgaatgctactagagatacatttaagta |
200 |
Q |
| |
|
||||||||| | ||||| |||||||| || | | | ||||||||||||||||||||| ||| |||||||| ||||| ||| ||| |||||| || |
|
|
| T |
42260372 |
tattcttatccattttctggtactaaagg------aca-acttgtatcagctcatggatttatcctattccttga-tgctaatagcaatatatttaatta |
42260281 |
T |
|
| Q |
201 |
ttgaatctgctaggtctcttgatcaatctcttaggcctttg |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42260280 |
ttgaatctgctaggtctcttgatcaatctcttgggcctttg |
42260240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 42272620 - 42272573
Alignment:
| Q |
29 |
tataggatattgagacactaattgtcttcaccccattgattaaaatat |
76 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
42272620 |
tataggatattgagacactaattgtcttcatcccattgattaaaatat |
42272573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 42285654 - 42285607
Alignment:
| Q |
29 |
tataggatattgagacactaattgtcttcaccccattgattaaaatat |
76 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
42285654 |
tataggatattgagacactaattgtcttcatcccattgattaaaatat |
42285607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 489299 - 489075
Alignment:
| Q |
1 |
acgatacaattcttcctaggatatagattataggatattgagacactaattgtcttcaccccattgattaaaatatnnnnnnnnnnttgctaactatttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| || |||| |||||| |
|
|
| T |
489299 |
acgatacaattcttcctaggatatag-------gatattgagacactaattgtcttcgatccattgattaaaatataaaagaaaa-ttcctaattatttt |
489208 |
T |
|
| Q |
101 |
tattcttatgctttttcaggtactaatggtactagagatatttgtatcagctcatggatttaccctcttccttgaatgctactagagatacatttaagta |
200 |
Q |
| |
|
||||||||| | ||||| |||||||| || | | | ||||||||||||||||||||| ||| |||||||| ||||| ||| ||| |||||| || |
|
|
| T |
489207 |
tattcttatccattttctggtactaaagg------aca-acttgtatcagctcatggatttatcctattccttga-tgctaatagcaatatatttaatta |
489116 |
T |
|
| Q |
201 |
ttgaatctgctaggtctcttgatcaatctcttaggcctttg |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
489115 |
ttgaatctgctaggtctcttgatcaatctcttgggcctttg |
489075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University