View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14642_low_54 (Length: 243)

Name: NF14642_low_54
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14642_low_54
NF14642_low_54
[»] chr2 (1 HSPs)
chr2 (15-226)||(28447778-28447990)
[»] chr5 (2 HSPs)
chr5 (60-226)||(16117577-16117740)
chr5 (72-149)||(25632735-25632813)
[»] chr6 (2 HSPs)
chr6 (72-226)||(23256385-23256537)
chr6 (69-149)||(11421834-11421915)
[»] chr1 (1 HSPs)
chr1 (60-149)||(9450920-9451010)
[»] chr8 (3 HSPs)
chr8 (66-226)||(2601777-2601932)
chr8 (66-226)||(17786335-17786502)
chr8 (69-149)||(3755752-3755833)
[»] chr7 (2 HSPs)
chr7 (69-226)||(7678770-7678925)
chr7 (69-149)||(22580934-22581015)
[»] scaffold0321 (1 HSPs)
scaffold0321 (121-226)||(13899-13999)
[»] chr4 (1 HSPs)
chr4 (72-149)||(53976866-53976944)


Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 226
Target Start/End: Original strand, 28447778 - 28447990
Alignment:
Q  15 atgaagaaactattattatcaaaatgcatcgtctcactatctttcttttgctagttgttaattcaagttagtatagttgattagtgatttaatcaagtct 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28447778 atgaagaaactattattatcaaaatgcatcgtctcactatctttcttttgctagttgttaattcaagttagtatagttgattagtgatttaatcaagtct 28447877  T
Q  115 tgttggttaaatcacatagtaatcaagttagttttaatttgtttgtt-aaagtttgttacagattttgcttctttttagcataaggtagtaagggtttgg 213  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||| |||||||||    
T  28447878 tgttggttaaatcatatagtaatcaagttagttttaatttgtttgttaaaagtttgttacagattttgcttgcttttagcataaggtagttagggtttgg 28447977  T
Q  214 gagatgacttgtt 226  Q
    |||||||||||||    
T  28447978 gagatgacttgtt 28447990  T

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Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 60 - 226
Target Start/End: Original strand, 16117577 - 16117740
Alignment:
Q  60 ttttgctagttgttaattcaagttagtatagttgattagtgatttaatcaagtcttg-ttggttaaatcacatagtaatcaagttagttttaatttgttt 158  Q
    ||||| |||||||||||||||| |||| |||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||| |||| |||||      
T  16117577 ttttgttagttgttaattcaagatagtgtagttgattagtgatttaatcaaaacttgtttggttaaatcacatagtaatcaagttagatttagtttgt-- 16117674  T
Q  159 gttaaagtttgttacagattttgcttctttttagcataaggtagtaagggtttgggagatgacttgtt 226  Q
     | ||| |||||||| | ||||||||  |||||||||||||||||  ||||||| |||||||||||||    
T  16117675 -taaaactttgttac-ggttttgcttgattttagcataaggtagttggggtttgagagatgacttgtt 16117740  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 72 - 149
Target Start/End: Original strand, 25632735 - 25632813
Alignment:
Q  72 ttaattcaagttagtatagttgattagtgatttaatcaagtcttg-ttggttaaatcacatagtaatcaagttagtttt 149  Q
    ||||||||||||||||||||||||||||| |||||||||| |||| ||||||||| |||||||||| |||||| |||||    
T  25632735 ttaattcaagttagtatagttgattagtgttttaatcaaggcttgtttggttaaaacacatagtaaccaagtttgtttt 25632813  T

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Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 72 - 226
Target Start/End: Original strand, 23256385 - 23256537
Alignment:
Q  72 ttaattcaagttagtatagttgattagtgatttaatcaagtcttg-ttggttaaatcacatagtaatcaagttagttttaatttgtttgttaaagtttgt 170  Q
    ||||||||||||||||||||||||||||| |||||||||| |||| ||||||||| ||||| |||| ||||||  || || || |||  |   |||||||    
T  23256385 ttaattcaagttagtatagttgattagtgttttaatcaaggcttgtttggttaaaacacattgtaaccaagttgcttatagttggttatt---agtttgt 23256481  T
Q  171 tacagattttgcttctttttagcataaggtagtaagggtttgggagatgacttgtt 226  Q
    ||| | |||||||   ||||||||||||||||| ||| |||| |||||||||||||    
T  23256482 tactgtttttgctagattttagcataaggtagttaggttttgagagatgacttgtt 23256537  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 11421915 - 11421834
Alignment:
Q  69 ttgttaattcaagttagtatagttgattagtgatttaatcaagtcttgttggttaa-atcacatagtaatcaagttagtttt 149  Q
    ||||||||||||||||| | |  |||||||||| ||||||| || |  |||||||| |||||||||||||||||||||||||    
T  11421915 ttgttaattcaagttagaacaagtgattagtgacttaatcatgtttgtttggttaagatcacatagtaatcaagttagtttt 11421834  T

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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 60 - 149
Target Start/End: Original strand, 9450920 - 9451010
Alignment:
Q  60 ttttgctagttgttaattcaagttagtatagttgattagtgatttaa-tcaagtcttgttggttaaatcacatagtaatcaagttagtttt 149  Q
    ||||| ||||||||| |||||||||| ||| |||||||||||||||| |||||| |  ||| |||||||||||||||||||||||||||||    
T  9450920 ttttgttagttgttatttcaagttagcataattgattagtgatttaattcaagtttgtttgattaaatcacatagtaatcaagttagtttt 9451010  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 226
Target Start/End: Complemental strand, 2601932 - 2601777
Alignment:
Q  66 tagttgttaattcaagttagtatagttgattagtgatttaat-caagtcttgttggttaaatcacatagtaatcaagttagttttaatttgtttgtt-aa 163  Q
    |||||||||||||||||||| ||| ||||||||||||||||| ||||| ||||| | | ||||| ||||||||||||||||||||     ||||||| ||    
T  2601932 tagttgttaattcaagttagcataattgattagtgatttaattcaagt-ttgtttgattaatcatatagtaatcaagttagtttt-----gtttgttgaa 2601839  T
Q  164 agtttgttacagattttgcttctttttagcataaggtagtaagggtttgggagatgacttgtt 226  Q
    |||| ||||||  |||||||  |||||||||  |||| || | |||||| |||||||||||||    
T  2601838 agttagttacat-ttttgctaatttttagcactaggttgttaaggtttgagagatgacttgtt 2601777  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 226
Target Start/End: Complemental strand, 17786502 - 17786335
Alignment:
Q  66 tagttgttaattcaagttagtatagttgattagtgatttaatcaagtcttgtt-ggttaaatcacatagtaatcaagttagttttaatttgtt------- 157  Q
    ||||||||||||||||||||||| | ||||||||| ||||||||||  ||||| ||||||| ||||| |||| | |||| | | || || |||           
T  17786502 tagttgttaattcaagttagtat-gatgattagtgttttaatcaaggattgtttggttaaaacacattgtaacccagttggatatagttggttattcaat 17786404  T
Q  158 tgttaaagtttgttacagattttgcttctttttagcataaggtagtaagggtttgggagatgacttgtt 226  Q
    ||||||||||||||| |  ||| ||| | ||||||||||||||||| ||||||||||||||||||||||    
T  17786403 tgttaaagtttgttataattttagctacgttttagcataaggtagttagggtttgggagatgacttgtt 17786335  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 3755833 - 3755752
Alignment:
Q  69 ttgttaattcaagttagtatagttgattagtgatttaatcaagtcttgttggttaa-atcacatagtaatcaagttagtttt 149  Q
    ||||||||||||||||| |||  |||||||||| |||||||||| |  |||||||| || ||||||||||||||||||||||    
T  3755833 ttgttaattcaagttagaataagtgattagtgacttaatcaagtttgtttggttaagatgacatagtaatcaagttagtttt 3755752  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 226
Target Start/End: Complemental strand, 7678925 - 7678770
Alignment:
Q  69 ttgttaattcaagttagtatagttgattagtgatttaatcaagtcttgttggttaa-atcacatagtaatcaagttagttttaatttgtttgtta--aag 165  Q
    ||||||||||||||||| |||  ||||| |||| |||||||||| |  |||||||| |||||||||||||||||||||||||     ||||||||  |||    
T  7678925 ttgttaattcaagttagaataagtgatttgtgacttaatcaagtttgtttggttaagatcacatagtaatcaagttagtttt-----gtttgttatgaag 7678831  T
Q  166 tttgttacagattttgcttctttttagcataaggtagtaagggtttgggagatgacttgtt 226  Q
    || ||||||  |||||||   ||||||||| ||||  | ||||||| ||||||||||||||    
T  7678830 ttagttacattttttgctagattttagcattaggttattagggttttggagatgacttgtt 7678770  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 22580934 - 22581015
Alignment:
Q  69 ttgttaattcaagttagtatagttgattagtgatttaatcaagtcttgttggttaa-atcacatagtaatcaagttagtttt 149  Q
    ||||||||||||||||| |||  |||||||||| |||||||||  |  |||||||| |||||||||||||||||||| ||||    
T  22580934 ttgttaattcaagttagaataagtgattagtgacttaatcaaggttgtttggttaagatcacatagtaatcaagttaatttt 22581015  T

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Target: scaffold0321 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 121 - 226
Target Start/End: Complemental strand, 13999 - 13899
Alignment:
Q  121 ttaaatcacatagtaatcaagttagttttaatttgtttgttaaagtttgttacagattttgcttctttttagcataaggtagtaagggtttgggagatga 220  Q
    |||||||||||||||||||||||||||||  || |||    |||||||||||||| |||||||| |||||| ||||||||| | |||||||| |||||||    
T  13999 ttaaatcacatagtaatcaagttagttttggttcgtta---aaagtttgttacag-ttttgcttgttttta-cataaggtaattagggtttgagagatga 13905  T
Q  221 cttgtt 226  Q
    ||||||    
T  13904 cttgtt 13899  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 149
Target Start/End: Original strand, 53976866 - 53976944
Alignment:
Q  72 ttaattcaagttagtatagttgattagtgatttaatcaagtcttgttggttaa-atcacatagtaatcaagttagtttt 149  Q
    |||||||||||||| |||  |||||||||| |||||||||| |  |||||||| |||||||| |||| |||||| ||||    
T  53976866 ttaattcaagttagaataaatgattagtgacttaatcaagtttgtttggttaagatcacatactaattaagttaatttt 53976944  T

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