View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14642_low_57 (Length: 239)
Name: NF14642_low_57
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14642_low_57 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 2789618 - 2789397
Alignment:
| Q |
18 |
attggaaggtgaatataaacttcatattcaggatagcttcattggcagtattgccaattatacacacagaggcacttgcttcataaataaattatatgca |
117 |
Q |
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| T |
2789618 |
attggaaggtgaatataaacttcatattcaggatagcttcattggcagtattgccaattatacacacagaagcacttgcttcataaataaattatatgca |
2789519 |
T |
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| Q |
118 |
aagttaattattcaccgatcacaggttatacaagacaacatcttgtgaaagaaattttcggaattgcgacgtgtactgcatgtattggcacaatcaacaa |
217 |
Q |
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| T |
2789518 |
aagttaattattcaccgatcacaggttatacaagacaacatcttgtgaaagaaattttcggaattgcgacgtgtactgcatgtattggcacaatcaacaa |
2789419 |
T |
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| Q |
218 |
tatcacatccatcagcgccatt |
239 |
Q |
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| T |
2789418 |
tatcacatccatcagctccatt |
2789397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 2830873 - 2830651
Alignment:
| Q |
18 |
attggaaggtgaatataaactt-catattcaggatagcttcattggcagtattgccaattatacacacagaggcacttgcttcataaataaattatatgc |
116 |
Q |
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| T |
2830873 |
attggaaggtgaatataaactttcttattcaggatagcctcatcgacaatattggcaattatacacacagaagcacttgtttcataaataaattatgtgc |
2830774 |
T |
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| Q |
117 |
aaagttaattattcaccgatcacaggttatacaagacaacatcttgtgaaagaaattttcggaattgcgacgtgtactgcatgtattggcacaatcaaca |
216 |
Q |
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| T |
2830773 |
aaagttaactattcaccgatcacgtgttatacaagacaacatcttgtgaaagaaatttttggaattgggtagtttactgcatgtattagcacaatcaaca |
2830674 |
T |
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| Q |
217 |
atatcacatccatcagcgccatt |
239 |
Q |
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| T |
2830673 |
atatcacatccatcagctccatt |
2830651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 41660561 - 41660616
Alignment:
| Q |
18 |
attggaaggtgaatataaacttcatattcaggatagcttc-attggcagtattgccaa |
74 |
Q |
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| T |
41660561 |
attggaaggtgaatata--cttcttattcaggatagcttctattgacagtattgccaa |
41660616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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