View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14642_low_59 (Length: 236)

Name: NF14642_low_59
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14642_low_59
NF14642_low_59
[»] chr3 (6 HSPs)
chr3 (18-221)||(51120811-51121014)
chr3 (32-140)||(51113780-51113888)
chr3 (32-205)||(13470666-13470839)
chr3 (32-205)||(51764374-51764547)
chr3 (52-119)||(27005792-27005859)
chr3 (81-135)||(1657292-1657346)
[»] chr8 (9 HSPs)
chr8 (32-140)||(18315272-18315380)
chr8 (32-206)||(34936096-34936270)
chr8 (27-137)||(27922495-27922605)
chr8 (27-138)||(17636402-17636513)
chr8 (32-140)||(32151293-32151401)
chr8 (32-157)||(21235550-21235675)
chr8 (27-219)||(28246215-28246405)
chr8 (77-118)||(17628035-17628076)
chr8 (82-137)||(17643598-17643653)
[»] chr5 (7 HSPs)
chr5 (27-204)||(32267462-32267636)
chr5 (28-205)||(41889488-41889665)
chr5 (27-132)||(41901542-41901647)
chr5 (32-132)||(37937879-37937979)
chr5 (35-133)||(38267562-38267660)
chr5 (32-114)||(20478107-20478189)
chr5 (29-82)||(12845582-12845635)
[»] chr4 (29 HSPs)
chr4 (32-206)||(553471-553645)
chr4 (32-142)||(1524483-1524593)
chr4 (32-205)||(3438500-3438672)
chr4 (28-139)||(8187091-8187202)
chr4 (28-140)||(1548423-1548535)
chr4 (32-157)||(570343-570468)
chr4 (28-140)||(546901-547013)
chr4 (32-139)||(1513407-1513514)
chr4 (35-138)||(8184031-8184134)
chr4 (32-143)||(1537763-1537874)
chr4 (32-138)||(12121458-12121564)
chr4 (32-205)||(7225817-7225990)
chr4 (19-198)||(55908669-55908848)
chr4 (32-109)||(1508033-1508110)
chr4 (33-137)||(7307853-7307957)
chr4 (74-205)||(1600453-1600584)
chr4 (37-158)||(532186-532307)
chr4 (78-138)||(1519143-1519203)
chr4 (46-137)||(1545779-1545870)
chr4 (33-140)||(1552766-1552873)
chr4 (31-205)||(53761706-53761878)
chr4 (67-204)||(659736-659873)
chr4 (33-205)||(640908-641080)
chr4 (74-138)||(12116576-12116640)
chr4 (32-139)||(1489361-1489468)
chr4 (28-112)||(55505135-55505219)
chr4 (28-86)||(12123423-12123481)
chr4 (35-84)||(558493-558542)
chr4 (33-90)||(566182-566239)
[»] chr6 (24 HSPs)
chr6 (35-205)||(6402855-6403025)
chr6 (30-160)||(6394854-6394984)
chr6 (32-205)||(6432153-6432326)
chr6 (47-219)||(6585157-6585329)
chr6 (48-152)||(12102274-12102378)
chr6 (32-142)||(6409998-6410108)
chr6 (36-205)||(6594540-6594709)
chr6 (27-219)||(11936195-11936387)
chr6 (27-219)||(11948175-11948367)
chr6 (34-161)||(14820687-14820814)
chr6 (32-137)||(6423209-6423314)
chr6 (32-219)||(7994102-7994289)
chr6 (32-142)||(6415958-6416068)
chr6 (35-205)||(7119152-7119322)
chr6 (35-205)||(7131630-7131800)
chr6 (32-141)||(9411347-9411456)
chr6 (34-142)||(14818376-14818484)
chr6 (32-112)||(19632431-19632511)
chr6 (35-133)||(14802331-14802429)
chr6 (35-114)||(10579761-10579840)
chr6 (74-137)||(28935083-28935146)
chr6 (30-160)||(6426501-6426631)
chr6 (54-140)||(6589322-6589408)
chr6 (35-111)||(6603230-6603306)
[»] chr2 (3 HSPs)
chr2 (32-206)||(45245018-45245192)
chr2 (19-205)||(1037598-1037784)
chr2 (35-138)||(32785773-32785876)
[»] chr1 (3 HSPs)
chr1 (41-137)||(52082582-52082678)
chr1 (30-160)||(19468478-19468608)
chr1 (39-137)||(52092776-52092874)
[»] chr7 (3 HSPs)
chr7 (32-205)||(15092085-15092258)
chr7 (77-219)||(7977615-7977757)
chr7 (32-205)||(10614585-10614758)
[»] scaffold0295 (1 HSPs)
scaffold0295 (39-160)||(603-724)
[»] scaffold0041 (1 HSPs)
scaffold0041 (33-112)||(39177-39256)


Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 51121014 - 51120811
Alignment:
Q  18 ctttctagagacaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51121014 ctttctagagacaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatt 51120915  T
Q  118 tgagaacttcaaagttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaacacaaccaatacc 217  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51120914 tgagaacttcaaagttcattccatgcagtttcactcttgaacaaccggtgaagttcaagtgtctaatgttacaacatctccataaaacacaaccaatacc 51120815  T
Q  218 tttg 221  Q
    ||||    
T  51120814 tttg 51120811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 32 - 140
Target Start/End: Complemental strand, 51113888 - 51113780
Alignment:
Q  32 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 131  Q
    |||||||||||||| ||||||||| ||||| ||||| ||| |||||||||||||  ||||||  |||||||  |||||||||| |||| || ||||||||    
T  51113888 ttgcaaaagcccacaacaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagtttgggagcttcaaag 51113789  T
Q  132 ttcattcca 140  Q
    |||||||||    
T  51113788 ttcattcca 51113780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 32 - 205
Target Start/End: Complemental strand, 13470839 - 13470666
Alignment:
Q  32 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 131  Q
    |||||||||||||| |||| |||||||||| | ||| ||| ||| ||||| |||  ||||||  |||||||||||||||||||  ||| ||||  |||||    
T  13470839 ttgcaaaagcccacaacaattctttgagatcatatagagtgttttatcattaacctttgtatttgacaagttcaacacctccagattgggaacaacaaag 13470740  T
Q  132 ttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 205  Q
    ||||||||| |  | |||||| ||  ||||  ||  |||||||| || ||||| ||||||||| ||| ||||||    
T  13470739 ttcattccaagtagcttcacttttttacaataggctaagttcaaatgcctaatcttacaacatatccttaaaac 13470666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 32 - 205
Target Start/End: Complemental strand, 51764547 - 51764374
Alignment:
Q  32 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 131  Q
    |||||||||||| | |||| ||||||||||  |||| ||| ||| |||||||||| |||||   |||||||  ||||||||||  ||  ||||| |||||    
T  51764547 ttgcaaaagcccgcaacaattctttgagatcgcatagagtgttttatcatcaacttttgtaaatgacaagtctaacacctccagcttcggaactgcaaag 51764448  T
Q  132 ttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 205  Q
    ||||||||| |  | ||||||||||||||  |||  | |||||| || ||||| ||| ||||||||| ||||||    
T  51764447 ttcattccaagtagcttcactcttgaacattcggataggttcaaatgcctaatcttagaacatctccttaaaac 51764374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 27005859 - 27005792
Alignment:
Q  52 tctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttg 119  Q
    |||||||||||||||| ||| ||  || ||||| ||||||||| ||||||||||| ||||||| ||||    
T  27005859 tctttgagattacataaagtgttgtattatcaattcttgtatgtgacaagttcaagacctccagtttg 27005792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 135
Target Start/End: Original strand, 1657292 - 1657346
Alignment:
Q  81 tcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttca 135  Q
    ||||||||||||   ||||||| ||||||||||| |||| |||||||||||||||    
T  1657292 tcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttca 1657346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 32 - 140
Target Start/End: Complemental strand, 18315380 - 18315272
Alignment:
Q  32 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 131  Q
    ||||||||||| |||||||||||||||||| ||||| |||  ||||||||||||| ||||||| ||||||||||||||||||| |||| |||||| ||||    
T  18315380 ttgcaaaagcctacgacaactctttgagatcacatagagtgcttcatcatcaacttttgtatgtgacaagttcaacacctccagtttgggaactttaaag 18315281  T
Q  132 ttcattcca 140  Q
    |||||||||    
T  18315280 ttcattcca 18315272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 32 - 206
Target Start/End: Complemental strand, 34936270 - 34936096
Alignment:
Q  32 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 131  Q
    |||||||||||||||||||||||||| |||  |||| ||| ||| |||||||||||||||||  ||||||| ||||||||| | |||  |||| ||||||    
T  34936270 ttgcaaaagcccacgacaactctttgcgatggcatagagtgttttatcatcaactcttgtatatgacaagtccaacacctctagttttggaacatcaaag 34936171  T
Q  132 ttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaaca 206  Q
     ||||||  ||  | |||||| |||||||| ||| ||||| ||| |||||||||| ||||||||||| |||||||    
T  34936170 atcattctgtgaaggttcacttttgaacaatcggccaagtacaaatgtctaatgtcacaacatctccttaaaaca 34936096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 137
Target Start/End: Original strand, 27922495 - 27922605
Alignment:
Q  27 gacaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaactt 126  Q
    ||||||| ||||||||||| ||||||||||||||| | ||| |||  ||||||||||||  ||||||  |||||||||||||||||||||||| ||||||    
T  27922495 gacaatttcaaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaacatttgtatatgacaagttcaacacctccaatttgggaactt 27922594  T
Q  127 caaagttcatt 137  Q
    |||||||||||    
T  27922595 caaagttcatt 27922605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 138
Target Start/End: Complemental strand, 17636513 - 17636402
Alignment:
Q  27 gacaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaactt 126  Q
    |||||||||||||| | | |||||||||||||||| ||||| | |  |||||| ||||||| ||| || |||||||||||||||||||||||| ||||||    
T  17636513 gacaattgcaaaagtctaagacaactctttgagatcacatacaatgcttcatcgtcaactcctgtttgtgacaagttcaacacctccaatttgggaactt 17636414  T
Q  127 caaagttcattc 138  Q
    ||||||||||||    
T  17636413 caaagttcattc 17636402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 140
Target Start/End: Original strand, 32151293 - 32151401
Alignment:
Q  32 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 131  Q
    |||||||||||||| ||||||||||||||| ||||| ||| ||||||||||||  ||||||   |||||||| ||||||||||  |||  |||||| |||    
T  32151293 ttgcaaaagcccactacaactctttgagatcacatagagtgtttcatcatcaaaccttgtacatgacaagtttaacacctccagattggaaacttcgaag 32151392  T
Q  132 ttcattcca 140  Q
    |||||||||    
T  32151393 ttcattcca 32151401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 157
Target Start/End: Original strand, 21235550 - 21235675
Alignment:
Q  32 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 131  Q
    |||||||||||  ||||| |||||||| || | ||| |||| ||| | |||||||| |||||  ||||||||||||||||||| |||| |||||||||||    
T  21235550 ttgcaaaagcctgcgacagctctttgaaatcaaatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaag 21235649  T
Q  132 ttcattccatgcggtttcactcttga 157  Q
    |||| ||||  | |||||||| ||||    
T  21235650 ttcactccacacagtttcacttttga 21235675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 219
Target Start/End: Complemental strand, 28246405 - 28246215
Alignment:
Q  27 gacaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaactt 126  Q
    |||| |||||||||||| | |||||||||||||||   ||| |||  || ||  ||||||||||||   ||||||| ||||||||||| |||| ||||||    
T  28246405 gacagttgcaaaagcccgctacaactctttgagatccaatagagtgatttat--tcaactcttgtaaatgacaagtccaacacctccagtttgggaactt 28246308  T
Q  127 caaagttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaacacaaccaatacctt 219  Q
    ||||||||| |  |||  | |||| |||||||||||  || || ||||| |||||||||||||||||| ||  |||||||  | |||||||||    
T  28246307 caaagttcaatgtatgtagcttcagtcttgaacaacgagttaaattcaaatgtctaatgttacaacatatcattaaaacatgaacaatacctt 28246215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 118
Target Start/End: Complemental strand, 17628076 - 17628035
Alignment:
Q  77 atcatcaactcttgtatgcgacaagttcaacacctccaattt 118  Q
    |||||||||||| ||||| |||||||||||||||||||||||    
T  17628076 atcatcaactctagtatgtgacaagttcaacacctccaattt 17628035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 137
Target Start/End: Complemental strand, 17643653 - 17643598
Alignment:
Q  82 caactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcatt 137  Q
    |||||||||| || |||||||||||| ||||||||||| ||||| ||| |||||||    
T  17643653 caactcttgtttgtgacaagttcaacgcctccaatttgggaactccaacgttcatt 17643598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 27 - 204
Target Start/End: Original strand, 32267462 - 32267636
Alignment:
Q  27 gacaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaactt 126  Q
    ||||||| ||||||||||| ||||||||||||||| | ||| |||  ||||||||||||| |||| || ||||||||||| |||||||||||| ||||||    
T  32267462 gacaatttcaaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtttgtgacaagttcaatacctccaatttgggaactt 32267561  T
Q  127 caaagttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaa 204  Q
    |||||||||||   |   |||||||| |||||||   ||  |||||||| |||||||||||||||||| ||| |||||    
T  32267562 caaagttcatt---tctagtttcactgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaa 32267636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 28 - 205
Target Start/End: Complemental strand, 41889665 - 41889488
Alignment:
Q  28 acaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttc 127  Q
    |||||| | ||||||| | |||||||||||||||   ||| ||| |||||||||||||| ||||||  || ||||||||||||||||||||| ||||||     
T  41889665 acaatttcgaaagcccgcaacaactctttgagatcttataaagtgtttcatcatcaacttttgtatatgataagttcaacacctccaatttgggaacttt 41889566  T
Q  128 aaagttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 205  Q
    |||||||||| || |  | |||||| ||||||| ||||  |||||||| | |||||||||||||||| ||| ||||||    
T  41889565 aaagttcatttcaagtagcttcactattgaacatccggataagttcaaatatctaatgttacaacatatccttaaaac 41889488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 132
Target Start/End: Complemental strand, 41901647 - 41901542
Alignment:
Q  27 gacaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaactt 126  Q
    ||||||| |||||| |||| ||||||||||||||| | ||| |||  ||||||||||||| ||||||  ||||||||||||||||||| |||| ||||||    
T  41901647 gacaatttcaaaagtccacaacaactctttgagatcatataaagtgcttcatcatcaacttttgtatatgacaagttcaacacctccagtttgggaactt 41901548  T
Q  127 caaagt 132  Q
    ||||||    
T  41901547 caaagt 41901542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 132
Target Start/End: Original strand, 37937879 - 37937979
Alignment:
Q  32 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 131  Q
    ||||||||||||||||||  |||||||||||||||| ||| ||| |||||||| ||||||||| | ||||| ||||||||| |  ||| |||||||||||    
T  37937879 ttgcaaaagcccacgacacatctttgagattacatagagtgtttgatcatcaattcttgtatgtgtcaagtccaacacctcaaggttgggaacttcaaag 37937978  T
Q  132 t 132  Q
    |    
T  37937979 t 37937979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 35 - 133
Target Start/End: Complemental strand, 38267660 - 38267562
Alignment:
Q  35 caaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagtt 133  Q
    |||||||||||| ||  |||||||||||||||| ||| | |||||||||||||||||||| | ||||| ||||||||| |  ||| |||||||||||||    
T  38267660 caaaagcccacggcacgtctttgagattacatagagtgtgtcatcatcaactcttgtatgtgtcaagtccaacacctcaaggttgggaacttcaaagtt 38267562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 114
Target Start/End: Complemental strand, 20478189 - 20478107
Alignment:
Q  32 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctcca 114  Q
    |||||||||||||| |||| || ||||||| ||| ||| | |||| ||||||||  ||||||  |||||||||||||||||||    
T  20478189 ttgcaaaagcccacaacaattccttgagatcacagataatgtttcgtcatcaacatttgtatatgacaagttcaacacctcca 20478107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 12845582 - 12845635
Alignment:
Q  29 caattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatc 82  Q
    ||||||||| || |||| |||||||||||||||| ||||||||  |||||||||    
T  12845582 caattgcaatagaccacaacaactctttgagattgcatatagtgcttcatcatc 12845635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 32 - 206
Target Start/End: Original strand, 553471 - 553645
Alignment:
Q  32 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 131  Q
    |||||||||||||  |||||||||||| || ||||  |||  |||||||||||||||||||   ||||||||||||||||||| ||||||||||| ||||    
T  553471 ttgcaaaagcccagaacaactctttgaaatcacattaagtgcttcatcatcaactcttgtaaatgacaagttcaacacctccagtttgagaactttaaag 553570  T
Q  132 ttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaaca 206  Q
    |||| |  | |    |||||||||||||| | ||| |||||||| |||||||||||||||||| ||| |||||||    
T  553571 ttcaatgtacgtaacttcactcttgaacagcgggttaagttcaaatgtctaatgttacaacatgtccttaaaaca 553645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 32 - 142
Target Start/End: Complemental strand, 1524593 - 1524483
Alignment:
Q  32 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 131  Q
    ||||||||||||||||||||||| |||||| | ||| ||| ||||||||||||| |||||| | ||||| |||||||||||||| ||| |||||||||||    
T  1524593 ttgcaaaagcccacgacaactctgtgagatcatatagagtgtttcatcatcaacacttgtacgtgacaaattcaacacctccaaattgggaacttcaaag 1524494  T
Q  132 ttcattccatg 142  Q
    |||||||||||    
T  1524493 ttcattccatg 1524483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 32 - 205
Target Start/End: Complemental strand, 3438672 - 3438500
Alignment:
Q  32 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 131  Q
    |||||||||||||| ||||||||||||||||||||  ||| ||| |||||||||||||||||| |||||| |||| |||||||||||   ||| ||||||    
T  3438672 ttgcaaaagcccacaacaactctttgagattacatggagtattt-atcatcaactcttgtatgtgacaagctcaatacctccaattttgaaacatcaaag 3438574  T
Q  132 ttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 205  Q
    |||||| ||  |   ||||||| | ||||||| |  |||||||| |||||||| ||||||||||||| ||||||    
T  3438573 ttcattgcacacaaattcactcctaaacaaccagctaagttcaaatgtctaatcttacaacatctccttaaaac 3438500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 28 - 139
Target Start/End: Complemental strand, 8187202 - 8187091
Alignment:
Q  28 acaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttc 127  Q
    |||| ||||||||||||| |||||||||||| ||| |||| ||| ||| |||||||||||||||||| ||||||||||||||||||| ||||  || |||    
T  8187202 acaactgcaaaagcccacaacaactctttgaaattgcataaagtgttttatcatcaactcttgtatgtgacaagttcaacacctccagtttggaaatttc 8187103  T
Q  128 aaagttcattcc 139  Q
    ||||||||||||    
T  8187102 aaagttcattcc 8187091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 28 - 140
Target Start/End: Complemental strand, 1548535 - 1548423
Alignment:
Q  28 acaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttc 127  Q
    |||| ||||||||||||| ||||||||||||||| ||||  ||| ||||||||||||  |||||||| ||||||||||||||||||| |||| ||| |||    
T  1548535 acaagtgcaaaagcccacaacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttc 1548436  T
Q  128 aaagttcattcca 140  Q
    |||||||| ||||    
T  1548435 aaagttcagtcca 1548423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 157
Target Start/End: Original strand, 570343 - 570468
Alignment:
Q  32 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 131  Q
    |||||||||||| |||||||||||||| || | ||| |||| ||| | |||||||| |||||  ||||||||||||||||| | ||||||||||||||||    
T  570343 ttgcaaaagcccgcgacaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctcgagtttgagaacttcaaag 570442  T
Q  132 ttcattccatgcggtttcactcttga 157  Q
    |||| |||| || |||||||| ||||    
T  570443 ttcaatccacgcagtttcacttttga 570468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 28 - 140
Target Start/End: Original strand, 546901 - 547013
Alignment:
Q  28 acaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttc 127  Q
    |||||| ||||||||||| ||||||||||||||| ||||| ||| |||||||||  ||  ||||| | |||||||||| ||||||||||||  |||||||    
T  546901 acaattccaaaagcccacaacaactctttgagatcacatagagtgtttcatcattgacaattgtacgtgacaagttcaccacctccaatttaggaacttc 547000  T
Q  128 aaagttcattcca 140  Q
    |||||||||||||    
T  547001 aaagttcattcca 547013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 32 - 139
Target Start/End: Complemental strand, 1513514 - 1513407
Alignment:
Q  32 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 131  Q
    |||||||||||||||||||| |||||||||||| || ||| |||||||||||||  |||||   |||||||||||||| || | |||| |||||||||||    
T  1513514 ttgcaaaagcccacgacaacactttgagattacgtagagtgtttcatcatcaacatttgtaaatgacaagttcaacacttctagtttgggaacttcaaag 1513415  T
Q  132 ttcattcc 139  Q
    ||||||||    
T  1513414 ttcattcc 1513407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 35 - 138
Target Start/End: Complemental strand, 8184134 - 8184031
Alignment:
Q  35 caaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttc 134  Q
    ||||||||||| |||||||||||||||| |||| |||  |  |||||||||||||||||| ||||||||||||||||| | |||  ||||||||||||||    
T  8184134 caaaagcccacaacaactctttgagattgcatagagtgctatatcatcaactcttgtatgtgacaagttcaacacctctagtttcggaacttcaaagttc 8184035  T
Q  135 attc 138  Q
    ||||    
T  8184034 attc 8184031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 32 - 143
Target Start/End: Complemental strand, 1537874 - 1537763
Alignment:
Q  32 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 131  Q
    |||||||||||||||||||| ||||||||||||| | ||| |||  |||| |||  ||||||  |||||||||||||| || | |||| |||||||||||    
T  1537874 ttgcaaaagcccacgacaacactttgagattacacacagtgttttgtcattaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaag 1537775  T
Q  132 ttcattccatgc 143  Q
    ||||||||||||    
T  1537774 ttcattccatgc 1537763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 32 - 138
Target Start/End: Complemental strand, 12121564 - 12121458
Alignment:
Q  32 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 131  Q
    ||||||||||||||| |||| ||||||||||||  | ||| |||||||||||||  ||||||  |||||||||||||| || | |||| |||||||||||    
T  12121564 ttgcaaaagcccacggcaacactttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaag 12121465  T
Q  132 ttcattc 138  Q
    |||||||    
T  12121464 ttcattc 12121458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 32 - 205
Target Start/End: Complemental strand, 7225990 - 7225817
Alignment:
Q  32 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 131  Q
    ||||||||| |||| |||||||||||| || |||   |||  ||  ||||||||||||||||| ||||||||||| |||||||||| |||||||||||||    
T  7225990 ttgcaaaagtccacaacaactctttgatatcacacgaagtcctttgtcatcaactcttgtatgtgacaagttcaagacctccaattcgagaacttcaaag 7225891  T
Q  132 ttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 205  Q
    |||||     |  | |||||||||| |||   ||  |||||||| |||||||| ||||||||||||| ||||||    
T  7225890 ttcatgttgcgtagcttcactcttggacagtaggataagttcaaatgtctaatcttacaacatctccgtaaaac 7225817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 55908848 - 55908669
Alignment:
Q  19 tttctagagacaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaattt 118  Q
    |||| ||| ||| ||| |||||||||| |||| |||||||||| | ||| ||| ||||||||||||| | |||||| |||||||| |||||||| ||||     
T  55908848 tttccagaaacagttgtaaaagcccacaacaattctttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattc 55908749  T
Q  119 gagaacttcaaagttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctcc 198  Q
      |||||| |||||| |||| | |  ||||||||||||||||   ||  || ||||| |||||||  |||||||||||||    
T  55908748 aggaactttaaagtttattctaagtagtttcactcttgaacagtaggctaaattcaaatgtctaaccttacaacatctcc 55908669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 1508110 - 1508033
Alignment:
Q  32 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacac 109  Q
    |||||||||||||||||||| ||||||||||||| | ||| |||||||||||||  | ||||| ||||||||||||||    
T  1508110 ttgcaaaagcccacgacaacactttgagattacacacagtgtttcatcatcaacattggtatgtgacaagttcaacac 1508033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 33 - 137
Target Start/End: Original strand, 7307853 - 7307957
Alignment:
Q  33 tgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagt 132  Q
    |||||||||| || ||||||||||||||| | |  ||||  |||||||||||||  |||||  ||||||||||| |||||||||||| |||||| |||||    
T  7307853 tgcaaaagcctacaacaactctttgagatcatacgtagtgcttcatcatcaacttctgtatatgacaagttcaatacctccaatttgggaactttaaagt 7307952  T
Q  133 tcatt 137  Q
    |||||    
T  7307953 tcatt 7307957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 205
Target Start/End: Original strand, 1600453 - 1600584
Alignment:
Q  74 ttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcactcttgaacaaccggtcaagttc 173  Q
    |||||| ||||| |||||||  ||||||||||||||||||| ||| ||||||||||||||||||||  || | |||| | |||||||   ||  ||||||    
T  1600453 ttcatcgtcaacccttgtatatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgggctaagttc 1600552  T
Q  174 aagtgtctaatgttacaacatctccataaaac 205  Q
    || |||||||| ||| || |||||| ||||||    
T  1600553 aaatgtctaattttagaaaatctccttaaaac 1600584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 37 - 158
Target Start/End: Original strand, 532186 - 532307
Alignment:
Q  37 aaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcat 136  Q
    ||||| |||||||| |||||||| | ||||| || |||||||||||||   ||||||  ||||||||||||||||| |  ||| | ||||||||||||||    
T  532186 aaagctcacgacaattctttgaggtcacataaagcttttcatcatcaatgtttgtatatgacaagttcaacacctctagcttggggacttcaaagttcat 532285  T
Q  137 tccatgcggtttcactcttgaa 158  Q
    |||| |  | ||||||||||||    
T  532286 tccaagtagattcactcttgaa 532307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 138
Target Start/End: Complemental strand, 1519203 - 1519143
Alignment:
Q  78 tcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattc 138  Q
    |||||||| |||||||| ||||||||||||||||| | |||| ||||||||||||||||||    
T  1519203 tcatcaacccttgtatgtgacaagttcaacacctctagtttgggaacttcaaagttcattc 1519143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 46 - 137
Target Start/End: Original strand, 1545779 - 1545870
Alignment:
Q  46 gacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcatt 137  Q
    ||||| ||||||  |||| ||| ||| ||||||||||||||||||||  | |||||||||||||||||| |||  |||||| ||||||||||    
T  1545779 gacaattctttgttattatataaagtgtttcatcatcaactcttgtaaacaacaagttcaacacctccagtttaggaactttaaagttcatt 1545870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 140
Target Start/End: Complemental strand, 1552873 - 1552766
Alignment:
Q  33 tgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagt 132  Q
    |||||||||||||||||| ||||||| || ||||  ||| ||||||||| ||   ||||||| ||||| |||||||| |||| |||| ||| ||||||||    
T  1552873 tgcaaaagcccacgacaattctttgatatcacattgagtgtttcatcattaatatttgtatgtgacaaattcaacacttccagtttgggaatttcaaagt 1552774  T
Q  133 tcattcca 140  Q
    ||| ||||    
T  1552773 tcagtcca 1552766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 205
Target Start/End: Complemental strand, 53761878 - 53761706
Alignment:
Q  31 attgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaa 130  Q
    |||||||||||||||||||| |||| ||||| ||| |  |||||  ||| | |||| | |||   |||||||||||| |||| |  ||| ||||| ||||    
T  53761878 attgcaaaagcccacgacaattcttcgagatcacagagtgtttt--atcgttaactttcgtaaatgacaagttcaacgcctctagcttgggaactacaaa 53761781  T
Q  131 gttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 205  Q
    ||||||||||    | ||||||||||||||  |||  |||||||| || ||||||||||||||||||| ||||||    
T  53761780 gttcattccaattagcttcactcttgaacactcggctaagttcaaatgcctaatgttacaacatctccttaaaac 53761706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 204
Target Start/End: Original strand, 659736 - 659873
Alignment:
Q  67 atagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcactcttgaacaaccggt 166  Q
    ||||| |||||| || ||| |||||||| ||||||||||||||||| | |||| |||||||||| || ||| |  |  | ||| |||||||||| | ||     
T  659736 atagtgtttcattattaacacttgtatgtgacaagttcaacacctctagtttgggaacttcaaaatttattactcgtagcttccctcttgaacagcaggc 659835  T
Q  167 caagttcaagtgtctaatgttacaacatctccataaaa 204  Q
     ||||| || | |||||||||||||||||||| |||||    
T  659836 taagtttaaatatctaatgttacaacatctccttaaaa 659873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 205
Target Start/End: Original strand, 640908 - 641080
Alignment:
Q  33 tgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagt 132  Q
    |||||||| ||||| ||| |||||||| | || || ||| |||||||||||||  ||||||  ||||||||||||||||||||| |  | | |||||| |    
T  640908 tgcaaaagaccacggcaattctttgaggtcacgtagagtgtttcatcatcaacgtttgtatctgacaagttcaacacctccaatattggtagttcaaatt 641007  T
Q  133 tcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 205  Q
    |||||||| |  | || ||||    ||||||||  |||||||| |||||||  ||||||||| ||| ||||||    
T  641008 tcattccaagtaggtttactccatcacaaccggctaagttcaaatgtctaacattacaacatatccttaaaac 641080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 12116640 - 12116576
Alignment:
Q  74 ttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattc 138  Q
    |||||||||||| |||||||| ||||||||||||||||| || ||  |||| |||||||||||||    
T  12116640 ttcatcatcaacacttgtatgtgacaagttcaacacctctaaatttggaacatcaaagttcattc 12116576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 139
Target Start/End: Complemental strand, 1489468 - 1489361
Alignment:
Q  32 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 131  Q
    ||||||||||||||| |||| | ||||||||||| | ||| |||| |  | |||  ||||||  |||||||||||||| || | |||| |||||||||||    
T  1489468 ttgcaaaagcccacggcaacacattgagattacacacagtgtttcgttgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaag 1489369  T
Q  132 ttcattcc 139  Q
    ||||||||    
T  1489368 ttcattcc 1489361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 112
Target Start/End: Complemental strand, 55505219 - 55505135
Alignment:
Q  28 acaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctc 112  Q
    |||| |||||||| ||||||||| |||||||| | ||||| ||| || |||| |||||  ||||||  |||||||||||||||||    
T  55505219 acaaatgcaaaagtccacgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctc 55505135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 12123481 - 12123423
Alignment:
Q  28 acaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaact 86  Q
    ||||||||||||||||||||||||| |||| |||| |||| |||  |||||| ||||||    
T  12123481 acaattgcaaaagcccacgacaactttttgggattgcataaagtgcttcatcgtcaact 12123423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 558493 - 558542
Alignment:
Q  35 caaaagcccacgacaactctttgagattacatatagtttttcatcatcaa 84  Q
    ||||||||||||||||||||||||||| ||||  |||  |||||||||||    
T  558493 caaaagcccacgacaactctttgagatcacatggagtgcttcatcatcaa 558542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 566182 - 566239
Alignment:
Q  33 tgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttg 90  Q
    |||||||||||||||||   ||||||||| ||||| ||| ||||||||||||| ||||    
T  566182 tgcaaaagcccacgacagtactttgagatcacatagagtgtttcatcatcaacgcttg 566239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 35 - 205
Target Start/End: Original strand, 6402855 - 6403025
Alignment:
Q  35 caaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttc 134  Q
    ||||||||||| |||| |||||||||| ||||| ||| |||||||||||||  | ||||  |||||||||||||| || | || | ||||| |||||||     
T  6402855 caaaagcccactacaattctttgagatcacatagagtgtttcatcatcaaccttcgtatctgacaagttcaacacttctagttggggaactgcaaagttt 6402954  T
Q  135 attccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 205  Q
    |||||| |  | |||||||||||||| || || |||||||| || ||||||||||||||||||| ||||||    
T  6402955 attccaagtagcttcactcttgaacacccagttaagttcaaatgcctaatgttacaacatctccttaaaac 6403025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 30 - 160
Target Start/End: Original strand, 6394854 - 6394984
Alignment:
Q  30 aattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaa 129  Q
    |||||||||||||||| |||| |||||||||| ||| | ||  ||||||||||||| |||||||  |||||||||||||||||||  | | ||||| |||    
T  6394854 aattgcaaaagcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaa 6394953  T
Q  130 agttcattccatgcggtttcactcttgaaca 160  Q
    |||||||||||||  |||||||| |||||||    
T  6394954 agttcattccatgtagtttcacttttgaaca 6394984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 205
Target Start/End: Original strand, 6432153 - 6432326
Alignment:
Q  32 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 131  Q
    ||||| |||||||| |||| ||||| |||| ||||| ||| ||||||||||||| |||||||  |||||||||||||||| ||  ||| |||||||||||    
T  6432153 ttgcagaagcccacaacaattctttaagatcacataaagtgtttcatcatcaacgcttgtatttgacaagttcaacaccttcagcttgggaacttcaaag 6432252  T
Q  132 ttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 205  Q
    |||||||||||  | |||||| ||  ||||  ||  |||||||| ||| |||  ||||||||||||| ||||||    
T  6432253 ttcattccatgtagcttcacttttatacaataggctaagttcaaatgtttaagtttacaacatctccttaaaac 6432326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 47 - 219
Target Start/End: Complemental strand, 6585329 - 6585157
Alignment:
Q  47 acaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggt 146  Q
    ||||||||||||||| ||||| ||| |||||||||||||  ||||||  ||||||||||| |||||||| | |  ||||  |||||| |||||| |  |     
T  6585329 acaactctttgagatcacatagagtgtttcatcatcaacctttgtatctgacaagttcaatacctccaactgggtaactaaaaagtttattccaagtagc 6585230  T
Q  147 ttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaacacaaccaatacctt 219  Q
    |||||||||||||| || || |||||||| || ||||| ||| ||||||||| |||||||  || ||||||||    
T  6585229 ttcactcttgaacacccagtaaagttcaaatgcctaatattaaaacatctccttaaaacatgacaaatacctt 6585157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 48 - 152
Target Start/End: Original strand, 12102274 - 12102378
Alignment:
Q  48 caactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtt 147  Q
    ||||||||||| || | ||| |||| ||| | |||||||| |||||| ||||||||||||||||||| |||| ||||||||||||||| ||||||| |||    
T  12102274 caactctttgaaatcagatagagttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttgggaacttcaaagttcaatccatgcagtt 12102373  T
Q  148 tcact 152  Q
    |||||    
T  12102374 tcact 12102378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 32 - 142
Target Start/End: Original strand, 6409998 - 6410108
Alignment:
Q  32 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 131  Q
    ||||||||||| || |||| |||||||||| ||||| ||  ||||||||||||| |||||||  ||| |||||||||||| ||  ||| |||||||||||    
T  6409998 ttgcaaaagccgacaacaattctttgagatcacataaagagtttcatcatcaacgcttgtatttgactagttcaacaccttcagcttgggaacttcaaag 6410097  T
Q  132 ttcattccatg 142  Q
    |||||||||||    
T  6410098 ttcattccatg 6410108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 36 - 205
Target Start/End: Complemental strand, 6594709 - 6594540
Alignment:
Q  36 aaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttca 135  Q
    |||||||||| |||| |||||||||| |||  |||| | |||||||||||   |||||  ||||||| ||||||||||| |||| |||||  |||||| |    
T  6594709 aaaagcccacaacaattctttgagatcacacgtagtgtctcatcatcaacctctgtatttgacaagtacaacacctccagtttgggaactaaaaagttta 6594610  T
Q  136 ttccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 205  Q
    |||||||  | |||||||||||||| ||||  |||| ||| ||| |||| ||| ||||||||| ||||||    
T  6594609 ttccatgtagcttcactcttgaacacccggataagtacaaatgtgtaatcttataacatctccttaaaac 6594540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 219
Target Start/End: Complemental strand, 11936387 - 11936195
Alignment:
Q  27 gacaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaactt 126  Q
    |||| |||||||||||||| |||||||||||||||   ||| |||  || ||| ||||||||||||   ||||||| ||||||||||| |||| ||||||    
T  11936387 gacagttgcaaaagcccactacaactctttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaactt 11936288  T
Q  127 caaagttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaacacaaccaatacctt 219  Q
    ||||||||| |  | |  | |||| ||||||||| |  || || ||||| |||||||||||||||||| ||  |||||||  | |||||||||    
T  11936287 caaagttcaatgtacgtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacatatcattaaaacatgaacaatacctt 11936195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 219
Target Start/End: Complemental strand, 11948367 - 11948175
Alignment:
Q  27 gacaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaactt 126  Q
    |||| |||||||||||||| |||||||||||||||   ||| |||  || ||| ||||||||||||   ||||||| ||||||||||| |||| ||||||    
T  11948367 gacagttgcaaaagcccactacaactctttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaactt 11948268  T
Q  127 caaagttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaacacaaccaatacctt 219  Q
    ||||||||| |  | |  | |||| ||||||||| |  || || ||||| |||||||||||||||||| ||  |||||||  | |||||||||    
T  11948267 caaagttcaatgtacgtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacatatcattaaaacatgaacaatacctt 11948175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 161
Target Start/End: Original strand, 14820687 - 14820814
Alignment:
Q  34 gcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagtt 133  Q
    |||||||||||| |||| |||| ||||| | ||| ||| |||||| ||||||  ||||||  || |||||||||||||| || ||| ||||| |||||||    
T  14820687 gcaaaagcccacaacaattcttggagatcatataaagtgtttcattatcaacctttgtatttgataagttcaacacctctaacttgggaactgcaaagtt 14820786  T
Q  134 cattccatgcggtttcactcttgaacaa 161  Q
     ||||||||  ||||||||| |||||||    
T  14820787 aattccatgtagtttcactcctgaacaa 14820814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 32 - 137
Target Start/End: Original strand, 6423209 - 6423314
Alignment:
Q  32 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 131  Q
    |||||||| ||||| |||||||||||||||  |||| ||| ||| |||   |||||||||||  |||||||||||||||||||  ||| |||||| ||||    
T  6423209 ttgcaaaatcccacaacaactctttgagatcgcatagagtgttttatcgctaactcttgtatttgacaagttcaacacctccagcttgggaacttaaaag 6423308  T
Q  132 ttcatt 137  Q
    ||||||    
T  6423309 ttcatt 6423314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 219
Target Start/End: Complemental strand, 7994289 - 7994102
Alignment:
Q  32 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 131  Q
    ||||||||| |||  |||| |||||||||| ||||||||| |||| |||| ||| |||||||  |||| |||||||||||| |  ||  ||||| |||||    
T  7994289 ttgcaaaagtccagaacaattctttgagatcacatatagtgtttcgtcattaacccttgtatttgacatgttcaacacctctagcttcggaactacaaag 7994190  T
Q  132 ttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaacacaaccaatacctt 219  Q
    ||||||||  |  | |||||||||| |||| |||  | |||||| || || || ||||||||| ||| ||||||  ||| ||||||||    
T  7994189 ttcattcctagtagcttcactcttgtacaatcggctatgttcaaatgcctgatcttacaacatttccttaaaacgtaacaaatacctt 7994102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 142
Target Start/End: Original strand, 6415958 - 6416068
Alignment:
Q  32 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 131  Q
    |||||||||||| | |||| |||||||||| ||||| ||  ||| ||||| |||  ||||||  |||||||||||||||||||  ||| ||||| |||||    
T  6415958 ttgcaaaagcccgctacaattctttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaag 6416057  T
Q  132 ttcattccatg 142  Q
    | |||||||||    
T  6416058 tccattccatg 6416068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 205
Target Start/End: Original strand, 7119152 - 7119322
Alignment:
Q  35 caaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttc 134  Q
    ||||||||| | |||| |||| ||||| ||||  ||| |||||||||||||  | ||||  |||||||||||||||||||  | | ||||  ||||||||    
T  7119152 caaaagcccgcaacaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggtgaacaacaaagttc 7119251  T
Q  135 attccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 205  Q
    |||||| |  | ||||||||||||||   ||  |||||||| ||| |||| ||| ||||||||| ||||||    
T  7119252 attccaagtagcttcactcttgaacagtgggctaagttcaaatgtttaatcttagaacatctccttaaaac 7119322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 205
Target Start/End: Original strand, 7131630 - 7131800
Alignment:
Q  35 caaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttc 134  Q
    ||||||||| | |||| |||| ||||| ||||  ||| |||||||||||||  | ||||  |||||||||||||||||||  | | ||||  ||||||||    
T  7131630 caaaagcccgcaacaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggcgaacaacaaagttc 7131729  T
Q  135 attccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 205  Q
    |||||| |  | ||||||||||||||   ||  |||||||| ||| |||| ||| ||||||||| ||||||    
T  7131730 attccaagtagcttcactcttgaacagtgggctaagttcaaatgtttaatcttagaacatctccttaaaac 7131800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 141
Target Start/End: Original strand, 9411347 - 9411456
Alignment:
Q  32 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 131  Q
    ||||||||| ||||||||| ||||||||||  |||| ||| |||||||   ||| | |||||  |||||||||||||||||||  ||| |||| ||||||    
T  9411347 ttgcaaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctccagcttgggaacctcaaag 9411446  T
Q  132 ttcattccat 141  Q
    |||| |||||    
T  9411447 ttcaatccat 9411456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 142
Target Start/End: Original strand, 14818376 - 14818484
Alignment:
Q  34 gcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagtt 133  Q
    |||||||||||  |||| |||| ||||| | ||| ||| |||||| ||||||  ||||||  || |||||||||||||| || ||||||||| |||||||    
T  14818376 gcaaaagcccagaacaattcttggagatcatataaagtgtttcattatcaacctttgtatttgataagttcaacacctctaacttgagaactgcaaagtt 14818475  T
Q  134 cattccatg 142  Q
     ||||||||    
T  14818476 aattccatg 14818484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 19632431 - 19632511
Alignment:
Q  32 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctc 112  Q
    |||||||||||||| |||| |||||||||| ||| | ||||  |||||||||||  |||||| |||||||| |||||||||    
T  19632431 ttgcaaaagcccacaacaattctttgagatcacaaaaagttgctcatcatcaacctttgtatacgacaagtccaacacctc 19632511  T

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Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 133
Target Start/End: Original strand, 14802331 - 14802429
Alignment:
Q  35 caaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagtt 133  Q
    |||||| |||| |||| ||||||| || ||||| ||| |||||||||||||  ||||||  ||||| |||||||| ||||  ||| |||||||||||||    
T  14802331 caaaagaccacaacaattctttgaaatcacatagagtgtttcatcatcaacctttgtatttgacaaattcaacacttccatcttgggaacttcaaagtt 14802429  T

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Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 114
Target Start/End: Complemental strand, 10579840 - 10579761
Alignment:
Q  35 caaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctcca 114  Q
    |||||||| || |||| ||||||||||   ||| ||| ||| |||||||||| ||||||  |||||||||||||||||||    
T  10579840 caaaagccgacaacaattctttgagatcgaatagagtgttttatcatcaacttttgtatatgacaagttcaacacctcca 10579761  T

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Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 137
Target Start/End: Original strand, 28935083 - 28935146
Alignment:
Q  74 ttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcatt 137  Q
    |||||| |||||||||||||| ||||||||||||||||| | || | |||| ||||| ||||||    
T  28935083 ttcatcgtcaactcttgtatgtgacaagttcaacacctcgagttggggaacatcaaacttcatt 28935146  T

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Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 160
Target Start/End: Original strand, 6426501 - 6426631
Alignment:
Q  30 aattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaa 129  Q
    |||||||||| || || |||| ||||||||||  |||| |   ||||||||||||  ||||| |  ||||| |||||||||||||  | | ||||| |||    
T  6426501 aattgcaaaatccgacaacaattctttgagatcgcataaaaagtttcatcatcaatgcttgtgtttgacaaattcaacacctccagctcgggaactgcaa 6426600  T
Q  130 agttcattccatgcggtttcactcttgaaca 160  Q
    |||||||||||||  |||||||  |||||||    
T  6426601 agttcattccatgtagtttcacgtttgaaca 6426631  T

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Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 140
Target Start/End: Complemental strand, 6589408 - 6589322
Alignment:
Q  54 tttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattcca 140  Q
    |||||||| | ||||||| ||| ||||| |||  ||||||  |||||||||||||||||||   || ||||| ||||||||||||||    
T  6589408 tttgagatcagatatagtgttttatcattaacatttgtatttgacaagttcaacacctccagcatgggaactacaaagttcattcca 6589322  T

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Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 111
Target Start/End: Complemental strand, 6603306 - 6603230
Alignment:
Q  35 caaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacct 111  Q
    |||||||||| ||||||||||||||||  |||| | | ||||||||||||| | |||||  | ||||| ||||||||    
T  6603306 caaaagcccaggacaactctttgagatcgcatagactgtttcatcatcaacacctgtatctgccaagtccaacacct 6603230  T

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Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 32 - 206
Target Start/End: Complemental strand, 45245192 - 45245018
Alignment:
Q  32 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 131  Q
    |||||||||||||||||||||||||||||| ||||  ||| |||||||||||||  |||| |  ||||| ||||||||||| | |||  |||||||||||    
T  45245192 ttgcaaaagcccacgacaactctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacacctcaagttttggaacttcaaag 45245093  T
Q  132 ttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaaca 206  Q
    || |||||| |   || || ||||||||| |     ||||| || || ||||||||||||||||||| |||||||    
T  45245092 tttattccacgtaattccagtcttgaacagcaaactaagtttaaatgcctaatgttacaacatctccttaaaaca 45245018  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 1037784 - 1037598
Alignment:
Q  19 tttctagagacaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaattt 118  Q
    |||| ||| ||| ||| |||||||||| |||| |||||||||| | ||| ||| ||||||||||||| | |||||| |||||||| |||||||| ||||     
T  1037784 tttccagaaacagttgtaaaagcccacaacaattctttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattc 1037685  T
Q  119 gagaacttcaaagttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 205  Q
      |||||| |||||| |||| | |  |||||||||||||| |   ||  || ||||| |||||||  ||||||||||||| ||||||    
T  1037684 aggaactttaaagtttattctaagtagtttcactcttgaatagtaggctaaattcaaatgtctaaccttacaacatctccttaaaac 1037598  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 35 - 138
Target Start/End: Complemental strand, 32785876 - 32785773
Alignment:
Q  35 caaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttc 134  Q
    |||||||||| || ||||  ||||||| ||||| |||  ||||||||||| ||||||||| ||||||||||||||||| | |||| || ||| |||||||    
T  32785876 caaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagctttaaagttc 32785777  T
Q  135 attc 138  Q
    ||||    
T  32785776 attc 32785773  T

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Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 41 - 137
Target Start/End: Original strand, 52082582 - 52082678
Alignment:
Q  41 cccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcatt 137  Q
    ||||| ||||||||||||||| ||||| | | |||||||||||| | |||| |  ||||||||||||||||||||||||  ||||| ||||||||||    
T  52082582 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 52082678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 160
Target Start/End: Complemental strand, 19468608 - 19468478
Alignment:
Q  30 aattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaa 129  Q
    |||| |||||| |||| |||  |||||||||| ||||| ||| |||||||||||||  ||||||  ||||| |||||||||||||  ||| ||||| |||    
T  19468608 aattccaaaagtccacaacagttctttgagatcacataaagtgtttcatcatcaacctttgtatctgacaacttcaacacctccagcttgggaactacaa 19468509  T
Q  130 agttcattccatgcggtttcactcttgaaca 160  Q
    |||||| |||| |  | ||||||||||||||    
T  19468508 agttcactccaagtagattcactcttgaaca 19468478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 137
Target Start/End: Original strand, 52092776 - 52092874
Alignment:
Q  39 agcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcatt 137  Q
    ||||||| | ||||||||||||| ||||| | | | |||||||||| | |||| |  | ||||||||||||||||||||||  ||||| ||||||||||    
T  52092776 agcccacaaaaactctttgagatcacatacaatgtgtcatcatcaatttttgtctttgccaagttcaacacctccaatttggaaacttgaaagttcatt 52092874  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 32 - 205
Target Start/End: Complemental strand, 15092258 - 15092085
Alignment:
Q  32 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 131  Q
    |||||||||||||| |||| ||||||||||  |||| ||| ||| ||||| |||  |||| |  ||||| |||||||||||||  | | ||||| |||||    
T  15092258 ttgcaaaagcccacaacaattctttgagatcgcatagagtgttttatcattaacctttgtttctgacaaattcaacacctccagctcgggaactgcaaag 15092159  T
Q  132 ttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 205  Q
    |||||||||||  ||||||| ||| |||| || || |||||||| ||| |||  ||| ||||| ||| ||||||    
T  15092158 ttcattccatgtagtttcacacttaaacatccagttaagttcaaatgtttaagcttataacatttccttaaaac 15092085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 219
Target Start/End: Original strand, 7977615 - 7977757
Alignment:
Q  77 atcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcactcttgaacaaccggtcaagttcaag 176  Q
    |||||||||| ||||||| |||||||||||  |||| | ||||  ||| || || ||||||||| |  | ||||| |||||||||| ||  | ||| ||     
T  7977615 atcatcaactgttgtatgtgacaagttcaaagcctcgagtttgcaaacgtcgaatttcattccacgtagattcacccttgaacaacaggctaggtttaaa 7977714  T
Q  177 tgtctaatgttacaacatctccataaaacacaaccaatacctt 219  Q
    |||||||||||||||||||||| ||||||   |||||||||||    
T  7977715 tgtctaatgttacaacatctccttaaaacttgaccaatacctt 7977757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 205
Target Start/End: Original strand, 10614585 - 10614758
Alignment:
Q  32 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 131  Q
    |||||||||||||| |||  |||| ||||| ||||| ||| ||| ||||| |||  | ||||  |||||||||||||||||||  ||| ||||  ||| |    
T  10614585 ttgcaaaagcccactacagttcttcgagatcacatagagtgttttatcattaaccttcgtatttgacaagttcaacacctccagattgggaacaacaacg 10614684  T
Q  132 ttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 205  Q
    ||||||||| |  | |||||| ||  ||||  ||  |||||||| || ||||| ||||||||| ||| ||||||    
T  10614685 ttcattccaagtagcttcacttttttacaataggctaagttcaaatgcctaatcttacaacatatccttaaaac 10614758  T

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Target: scaffold0295 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 724 - 603
Alignment:
Q  39 agcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattc 138  Q
    ||||||| |||| |||| ||||| | ||| ||| |||||||||| || |||||||| |||||||| |||||||| ||||   |||||| |||||| ||||    
T  724 agcccacaacaattcttcgagatcatatagagtgtttcatcatcgacacttgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattc 625  T
Q  139 catgcggtttcactcttgaaca 160  Q
     | |  ||||||||||||||||    
T  624 taagtagtttcactcttgaaca 603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 39177 - 39256
Alignment:
Q  33 tgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctc 112  Q
    ||||||||||||| ||||||||||||||| ||||| ||| ||||||||| |||  |||||   | |||||||||||||||    
T  39177 tgcaaaagcccactacaactctttgagatcacataaagtgtttcatcattaacctttgtaaatgtcaagttcaacacctc 39256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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