View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14642_low_6 (Length: 526)

Name: NF14642_low_6
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14642_low_6
NF14642_low_6
[»] chr4 (25 HSPs)
chr4 (208-526)||(49041539-49041851)
chr4 (423-526)||(48862815-48862918)
chr4 (427-526)||(33134227-33134326)
chr4 (427-526)||(7238121-7238220)
chr4 (427-526)||(7770982-7771081)
chr4 (427-526)||(7789667-7789766)
chr4 (474-526)||(48735716-48735768)
chr4 (471-523)||(48875468-48875520)
chr4 (427-526)||(33133615-33133714)
chr4 (436-526)||(45366622-45366712)
chr4 (436-526)||(45372458-45372548)
chr4 (472-526)||(48148086-48148140)
chr4 (474-526)||(48870167-48870219)
chr4 (474-526)||(48885853-48885905)
chr4 (477-524)||(48891037-48891084)
chr4 (419-526)||(49044630-49044737)
chr4 (436-526)||(48902537-48902627)
chr4 (474-526)||(48156828-48156880)
chr4 (1-37)||(49041863-49041899)
chr4 (429-526)||(48170990-48171087)
chr4 (474-526)||(7904657-7904709)
chr4 (439-523)||(45385191-45385275)
chr4 (474-526)||(7774230-7774282)
chr4 (430-526)||(7813061-7813157)
chr4 (474-526)||(7877345-7877397)
[»] chr1 (7 HSPs)
chr1 (429-526)||(24415417-24415514)
chr1 (474-526)||(24322087-24322139)
chr1 (477-526)||(24309805-24309854)
chr1 (481-526)||(24366787-24366832)
chr1 (1-37)||(16927187-16927223)
chr1 (477-526)||(24340042-24340091)
chr1 (1-37)||(48148039-48148075)
[»] chr8 (4 HSPs)
chr8 (474-526)||(15348487-15348539)
chr8 (436-526)||(4032317-4032407)
chr8 (474-526)||(12199932-12199984)
chr8 (474-526)||(12444360-12444412)
[»] chr5 (5 HSPs)
chr5 (474-523)||(42562735-42562784)
chr5 (474-526)||(29712870-29712922)
chr5 (472-523)||(178642-178693)
chr5 (472-526)||(29695775-29695829)
chr5 (472-523)||(29687674-29687725)
[»] scaffold0508 (1 HSPs)
scaffold0508 (477-526)||(11890-11939)
[»] chr3 (1 HSPs)
chr3 (474-526)||(11024938-11024990)


Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 208 - 526
Target Start/End: Complemental strand, 49041851 - 49041539
Alignment:
Q  208 atcttttcacgtatagaaatgtattaccatgttatgttactcctatttgacaatattttattgtctcataacttggaatcccttgcattgtgttcaccgt 307  Q
    ||||||||||||||||||||||| |||||||||||||||      |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  49041851 atcttttcacgtatagaaatgtagtaccatgttatgtta------tttgacaatattttattgtctcataacttggagtcccttgcattgtattcaccgt 49041758  T
Q  308 ggcggttgtcgctacatatcatctctgcaggcgtgggattgttgtttctctcataactttgtgaatcccttttaagttttaagaagagaaataaccatag 407  Q
     | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49041757 cgtggttgtcgctacatatcatctctgcaggcgtgggattgttgtttctctcataactttgtgaatcccttttaagttttaagaagagaaataaccatag 49041658  T
Q  408 cagagtaagacgaatccaatgtatctgtctcatgaattgatcatcctaattctaatgagattgtcagtgaagtctcttattcgtttcaaatgcgtttgca 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  49041657 cagagtaagacgaatccaatgtatctgtctcatgaattgatcatcctaattctaatgagattgccagtgaagtctcttatttgtttcaaatgcgtttgca 49041558  T
Q  508 agtcttggttttctcttat 526  Q
    |||||||||||||||||||    
T  49041557 agtcttggttttctcttat 49041539  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 423 - 526
Target Start/End: Original strand, 48862815 - 48862918
Alignment:
Q  423 ccaatgtatctgtctcatgaattgatcatcctaattctaatgagattgtcagtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctc 522  Q
    ||||||| |||| |||||||||||||||||||||| ||  | || ||  | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48862815 ccaatgtttctgcctcatgaattgatcatcctaatcctgctaaggttaccggtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctc 48862914  T
Q  523 ttat 526  Q
    ||||    
T  48862915 ttat 48862918  T

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Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 427 - 526
Target Start/End: Complemental strand, 33134326 - 33134227
Alignment:
Q  427 tgtatctgtctcatgaattgatcatcctaattctaatgagattgtcagtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttat 526  Q
    |||||||| ||||||||||||||||||| |||||  |||||||  | |||||||||||||||||||||||||||||||| ||| |||| |||||||||||    
T  33134326 tgtatctgcctcatgaattgatcatccttattctgttgagattaccggtgaagtctcttattcgtttcaaatgcgtttgtaagccttgattttctcttat 33134227  T

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Target: chr4; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 427 - 526
Target Start/End: Complemental strand, 7238220 - 7238121
Alignment:
Q  427 tgtatctgtctcatgaattgatcatcctaattctaatgagattgtcagtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttat 526  Q
    |||||||| |||||||| | ||||||| |||||| ||||| ||| ||||||||||||||||  |||||||||| ||||| ||||||||||||||||||||    
T  7238220 tgtatctgcctcatgaactaatcatccaaattctgatgaggttgccagtgaagtctcttatctgtttcaaatgtgtttgtaagtcttggttttctcttat 7238121  T

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Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 427 - 526
Target Start/End: Original strand, 7770982 - 7771081
Alignment:
Q  427 tgtatctgtctcatgaattgatcatcctaattctaatgagattgtcagtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttat 526  Q
    |||||||| |||||||| | || |||| |||||| ||||| ||| | ||||||||||||||  |||||||||||||||| ||||||||||||||||||||    
T  7770982 tgtatctgcctcatgaactaataatccaaattctgatgaggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttctcttat 7771081  T

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Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 427 - 526
Target Start/End: Original strand, 7789667 - 7789766
Alignment:
Q  427 tgtatctgtctcatgaattgatcatcctaattctaatgagattgtcagtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttat 526  Q
    |||||||| |||||||| |||| |||| |||||| ||||| ||| | ||||||||||||||  |||||||||||||||| ||||||||||||||| ||||    
T  7789667 tgtatctgcctcatgaactgataatccaaattctgatgaggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttcttttat 7789766  T

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Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 474 - 526
Target Start/End: Complemental strand, 48735768 - 48735716
Alignment:
Q  474 gtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttat 526  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  48735768 gtgaagtctcttattcgtttcaaatgtgtttgtaagtcttggttttctcttat 48735716  T

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Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 471 - 523
Target Start/End: Original strand, 48875468 - 48875520
Alignment:
Q  471 tcagtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctct 523  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  48875468 tcagtcaagtctctaattcgtttcaaatgcgtttgcaagtcttggttttctct 48875520  T

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Target: chr4; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 427 - 526
Target Start/End: Original strand, 33133615 - 33133714
Alignment:
Q  427 tgtatctgtctcatgaattgatcatcctaattctaatgagattgtcagtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttat 526  Q
    |||||||| ||||||||||||||||||| |||||  | || ||  || |||||||||||||||||||||||| | |||| |||  |||||||||||||||    
T  33133615 tgtatctgcctcatgaattgatcatccttattctgctaaggttaccaatgaagtctcttattcgtttcaaattcatttgtaagctttggttttctcttat 33133714  T

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Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 436 - 526
Target Start/End: Complemental strand, 45366712 - 45366622
Alignment:
Q  436 ctcatgaattgatcatcctaattctaatgagattgtcagtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttat 526  Q
    ||||||||||||| |||| ||| ||| | || ||  |||||||||||||||| |||||||| |||||||| |||| |||||||||||||||    
T  45366712 ctcatgaattgatgatccaaatcctactaaggttaccagtgaagtctcttatacgtttcaagtgcgtttgtaagtattggttttctcttat 45366622  T

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Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 436 - 526
Target Start/End: Complemental strand, 45372548 - 45372458
Alignment:
Q  436 ctcatgaattgatcatcctaattctaatgagattgtcagtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttat 526  Q
    ||||||||||||| || | ||||||| | || ||| | |||||||||||||| ||||||||||| ||||| ||||||||||||||| ||||    
T  45372548 ctcatgaattgatgattcaaattctactaaggttgccggtgaagtctcttatacgtttcaaatgtgtttgtaagtcttggttttctattat 45372458  T

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Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 472 - 526
Target Start/End: Complemental strand, 48148140 - 48148086
Alignment:
Q  472 cagtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttat 526  Q
    |||||||||||||||||||||||||||| || || ||||||||||||||||||||    
T  48148140 cagtgaagtctcttattcgtttcaaatgtgtctgtaagtcttggttttctcttat 48148086  T

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Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 474 - 526
Target Start/End: Original strand, 48870167 - 48870219
Alignment:
Q  474 gtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttat 526  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||| ||||||    
T  48870167 gtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttttcttat 48870219  T

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Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 474 - 526
Target Start/End: Original strand, 48885853 - 48885905
Alignment:
Q  474 gtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttat 526  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||| ||||||    
T  48885853 gtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttttcttat 48885905  T

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Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 477 - 524
Target Start/End: Original strand, 48891037 - 48891084
Alignment:
Q  477 aagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctctt 524  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  48891037 aagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctctt 48891084  T

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Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 419 - 526
Target Start/End: Complemental strand, 49044737 - 49044630
Alignment:
Q  419 gaatccaatgtatctgtctcatgaattgatcatcctaattctaatgagattgtcagtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttt 518  Q
    |||||||  ||||||| ||||||| ||||||||||| |||||  |||| ||| |||||| ||||||| | |||||||| || ||||| ||||  ||||||    
T  49044737 gaatccaccgtatctgcctcatgacttgatcatccttattctgctgaggttgccagtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttt 49044638  T
Q  519 tctcttat 526  Q
    ||||||||    
T  49044637 tctcttat 49044630  T

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Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 436 - 526
Target Start/End: Original strand, 48902537 - 48902627
Alignment:
Q  436 ctcatgaattgatcatcctaattctaatgagattgtcagtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttat 526  Q
    |||||||||||||||||| |||| |   | | ||| | || |||||||| |||||||||||||| ||||| ||||||||||||||||||||    
T  48902537 ctcatgaattgatcatccaaattttgcagtggttgccggtaaagtctctcattcgtttcaaatgtgtttgtaagtcttggttttctcttat 48902627  T

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Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 474 - 526
Target Start/End: Complemental strand, 48156880 - 48156828
Alignment:
Q  474 gtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttat 526  Q
    |||||||||||| | |||||||| |||||||| ||||||||||||||||||||    
T  48156880 gtgaagtctcttctacgtttcaagtgcgtttgtaagtcttggttttctcttat 48156828  T

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Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 49041899 - 49041863
Alignment:
Q  1 aaatcatataattcagtgtaattacatatgttggtgt 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  49041899 aaatcatataattcagtgtaattacatatgttggtgt 49041863  T

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Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 429 - 526
Target Start/End: Complemental strand, 48171087 - 48170990
Alignment:
Q  429 tatctgtctcatgaattgatcatcctaattctaatgagattgtcagtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttat 526  Q
    |||||| ||| |||||||||  | | ||||||  |||| || || |||||||||||| | ||||||||||| ||||| |||||||||||| |||||||    
T  48171087 tatctggctcttgaattgatagttcaaattctgctgaggttatcggtgaagtctcttctacgtttcaaatgtgtttgtaagtcttggtttgctcttat 48170990  T

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Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 474 - 526
Target Start/End: Original strand, 7904657 - 7904709
Alignment:
Q  474 gtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttat 526  Q
    |||||||||||||| ||||||||||| ||||| ||||  ||||||||||||||    
T  7904657 gtgaagtctcttatacgtttcaaatgtgtttgtaagttatggttttctcttat 7904709  T

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Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 439 - 523
Target Start/End: Complemental strand, 45385275 - 45385191
Alignment:
Q  439 atgaattgatcatcctaattctaatgagattgtcagtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctct 523  Q
    |||||||||| |||| ||| ||| | || ||  |||| |||||||| || |||||||||| |||||| |||||||||||||||||    
T  45385275 atgaattgatgatccaaatcctactaaggttaccagttaagtctctcatacgtttcaaatccgtttgtaagtcttggttttctct 45385191  T

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Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 474 - 526
Target Start/End: Complemental strand, 7774282 - 7774230
Alignment:
Q  474 gtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttat 526  Q
    |||||||||||||||| ||||||||| ||||| |||   ||||||||||||||    
T  7774282 gtgaagtctcttattcatttcaaatgtgtttgtaagctatggttttctcttat 7774230  T

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Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 526
Target Start/End: Original strand, 7813061 - 7813157
Alignment:
Q  430 atctgtctcatgaattgatcatcctaattctaatgagattgtcagtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttat 526  Q
    ||||| ||||||| ||||| ||||||||  |  |||| ||| | ||||||| |||||| |||||||| || ||||| || || ||||||||||||||    
T  7813061 atctgcctcatgatttgataatcctaatcttgttgaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttat 7813157  T

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Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 474 - 526
Target Start/End: Original strand, 7877345 - 7877397
Alignment:
Q  474 gtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttat 526  Q
    |||||||||||||| |||||||||||| |||| |||   ||||||||||||||    
T  7877345 gtgaagtctcttatacgtttcaaatgcatttgtaagctatggttttctcttat 7877397  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 429 - 526
Target Start/End: Original strand, 24415417 - 24415514
Alignment:
Q  429 tatctgtctcatgaattgatcatcctaattctaatgagattgtcagtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttat 526  Q
    |||||| || |||||||||||| || ||| ||| |||||||  | || ||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  24415417 tatctgcctgatgaattgatcacccaaatcctattgagattaccggttaagtctcttattcgtttcaaatgcgttcgtaagtcttggttttctcttat 24415514  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 474 - 526
Target Start/End: Original strand, 24322087 - 24322139
Alignment:
Q  474 gtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttat 526  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  24322087 gtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttat 24322139  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 477 - 526
Target Start/End: Original strand, 24309805 - 24309854
Alignment:
Q  477 aagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttat 526  Q
    |||||||||||||||||||||| |||||| ||||  ||||||||||||||    
T  24309805 aagtctcttattcgtttcaaatccgtttgtaagttatggttttctcttat 24309854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 481 - 526
Target Start/End: Original strand, 24366787 - 24366832
Alignment:
Q  481 ctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttat 526  Q
    |||| |||||||||||||| ||||||||||| ||||||||||||||    
T  24366787 ctctgattcgtttcaaatgtgtttgcaagtcatggttttctcttat 24366832  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 16927223 - 16927187
Alignment:
Q  1 aaatcatataattcagtgtaattacatatgttggtgt 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  16927223 aaatcatataattcagtgtaattatatatgttggtgt 16927187  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 526
Target Start/End: Original strand, 24340042 - 24340091
Alignment:
Q  477 aagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttat 526  Q
    ||||||||||||||||||||||  ||||| ||||| |||||||| |||||    
T  24340042 aagtctcttattcgtttcaaatctgtttgtaagtcatggttttcacttat 24340091  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 48148075 - 48148039
Alignment:
Q  1 aaatcatataattcagtgtaattacatatgttggtgt 37  Q
    |||||||||||||||||||||||| |||||| |||||    
T  48148075 aaatcatataattcagtgtaattatatatgtcggtgt 48148039  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 474 - 526
Target Start/End: Original strand, 15348487 - 15348539
Alignment:
Q  474 gtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttat 526  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  15348487 gtgaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttat 15348539  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 436 - 526
Target Start/End: Complemental strand, 4032407 - 4032317
Alignment:
Q  436 ctcatgaattgatcatcctaattctaatgagattgtcagtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttat 526  Q
    |||||||||||||||||| |||  || ||||| |  || ||||||||||||| |||||||| || ||||| || ||||||||  |||||||    
T  4032407 ctcatgaattgatcatccaaatcttactgagactaccaatgaagtctcttatacgtttcaagtgtgtttgtaaatcttggttaactcttat 4032317  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 474 - 526
Target Start/End: Original strand, 12199932 - 12199984
Alignment:
Q  474 gtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttat 526  Q
    |||||||||||| |  |||||||||| ||||| ||||| ||||||||||||||    
T  12199932 gtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttat 12199984  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 474 - 526
Target Start/End: Original strand, 12444360 - 12444412
Alignment:
Q  474 gtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttat 526  Q
    |||||||||||| |  |||||||||| ||||| ||||| ||||||||||||||    
T  12444360 gtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttat 12444412  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 474 - 523
Target Start/End: Complemental strand, 42562784 - 42562735
Alignment:
Q  474 gtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctct 523  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  42562784 gtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttctct 42562735  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 474 - 526
Target Start/End: Complemental strand, 29712922 - 29712870
Alignment:
Q  474 gtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttat 526  Q
    ||||||||||||||||||||||| |||||||| ||||  ||||||||||||||    
T  29712922 gtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttat 29712870  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 472 - 523
Target Start/End: Original strand, 178642 - 178693
Alignment:
Q  472 cagtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctct 523  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||| |||||    
T  178642 cagttaagtctcttattcgtttcaaatgtgtttgtaagtcttggttatctct 178693  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 472 - 526
Target Start/End: Original strand, 29695775 - 29695829
Alignment:
Q  472 cagtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttat 526  Q
    |||| ||||||||||||||||||||||||||||| ||||  ||||| ||||||||    
T  29695775 cagtcaagtctcttattcgtttcaaatgcgtttgtaagttatggttatctcttat 29695829  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 472 - 523
Target Start/End: Original strand, 29687674 - 29687725
Alignment:
Q  472 cagtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctct 523  Q
    |||||||||||||||| || ||||| || ||||| |||||||||||||||||    
T  29687674 cagtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctct 29687725  T

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Target: scaffold0508 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 477 - 526
Target Start/End: Original strand, 11890 - 11939
Alignment:
Q  477 aagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttat 526  Q
    ||||||||||| |||||||||| |||||| ||||| ||||||||||||||    
T  11890 aagtctcttatccgtttcaaatccgtttgtaagtcatggttttctcttat 11939  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 474 - 526
Target Start/End: Complemental strand, 11024990 - 11024938
Alignment:
Q  474 gtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttat 526  Q
    ||||||||||| || ||||||||||||||||| ||||| |||||  |||||||    
T  11024990 gtgaagtctctcatacgtttcaaatgcgtttgtaagtcatggttagctcttat 11024938  T

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