View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14642_low_61 (Length: 233)
Name: NF14642_low_61
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14642_low_61 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 17723776 - 17723994
Alignment:
| Q |
1 |
aataattaagtcggactgaaatttttgcaaagtattctaatgaaatctatacaatctttacaggaacactacaattaccattctgtgagaatttacaaaa |
100 |
Q |
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| T |
17723776 |
aataattaagtcgggctgaattttttgcaaagtattctaatgaaatctatacaatctttgcaggaacactacaattaccattctgtgagaatttacaaaa |
17723875 |
T |
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| Q |
101 |
tcttcagttgttgagatatggtcagctacatcgtcatcgcttttcgtcagcatcatctaaatgcatcagaaggacagaacaaactgcactttccgcagta |
200 |
Q |
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| T |
17723876 |
tattcagttgttgagatatggtcagctacatcatcatcgcttttcgtcagcatcatctaaatgaatcataaggacagaacaaactgcactttccgcagca |
17723975 |
T |
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| Q |
201 |
catagccgtgcatgatgat |
219 |
Q |
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| T |
17723976 |
catagccgtgcatgatgat |
17723994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 19025005 - 19025223
Alignment:
| Q |
1 |
aataattaagtcggactgaaatttttgcaaagtattctaatgaaatctatacaatctttacaggaacactacaattaccattctgtgagaatttacaaaa |
100 |
Q |
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|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
19025005 |
aataattaagtcgggctgaattttttgcaaagtattctaatgaaatctatacaatctttgcaggaacactacaattaccattctgtgagaatttacaaaa |
19025104 |
T |
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| Q |
101 |
tcttcagttgttgagatatggtcagctacatcgtcatcgcttttcgtcagcatcatctaaatgcatcagaaggacagaacaaactgcactttccgcagta |
200 |
Q |
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| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| | |
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| T |
19025105 |
tattcagttgttgagatatggtcagctacatcatcatcgcttttcgtcagcatcatctaaatgaatcataaggacagaacaaactgcactttccgcagca |
19025204 |
T |
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| Q |
201 |
catagccgtgcatgatgat |
219 |
Q |
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||||||||||||||||||| |
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| T |
19025205 |
catagccgtgcatgatgat |
19025223 |
T |
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