View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14642_low_68 (Length: 219)
Name: NF14642_low_68
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14642_low_68 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 37375513 - 37375308
Alignment:
| Q |
1 |
tatatattcttgtacatgacgatgcaaatttaaattaatacatgaatgtataatcaatcaatactttgtagatttaaaatcatcatgattgttgtcaatg |
100 |
Q |
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| T |
37375513 |
tatatattcttgtacatgataatgcaaatttaaattaatacatgaatgtataatcaatcaatactttgtagatttaaaatcatcatgat----------- |
37375425 |
T |
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| Q |
101 |
atatgataaaaatgttgagacagtaagttagtagtgccagtaccaagatcaacaccccaagcagcatactgctcatgaagagatctcaaaaaagctctcc |
200 |
Q |
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| T |
37375424 |
--atgataaaaatgttgagacagtaagttagtagtgccagtaccaagatcaacaccccaagcagcatactgctcatgaagagatctcaaaaaagctctcc |
37375327 |
T |
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| Q |
201 |
ctgctcctaaccttgtatt |
219 |
Q |
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| T |
37375326 |
ctgctcctaaccttgtatt |
37375308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 3 - 219
Target Start/End: Complemental strand, 37382863 - 37382647
Alignment:
| Q |
3 |
tatattcttgtacatgacgatgcaaatttaaattaatacatgaatgtataatcaatcaatactttgtagatttaaaatcatcatgattgttgtcaatgat |
102 |
Q |
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||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||| |
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| T |
37382863 |
tatattcttgtacatgataatgcaattccaaattaatacatgaatgtataatcaatcaatagtttgtaaattcaaaatcatcatgattgttgtcaatgat |
37382764 |
T |
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| Q |
103 |
atgataaaaatgttgagacagtaagttagtagtgccagtaccaagatcaacaccccaagcagcatactgctcatgaagagatctcaaaaaagctctccct |
202 |
Q |
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| T |
37382763 |
atgataaaaatgttgtgacagtaagttagtagtgccagtaccaagatcaacaccccaagcagcatactgtgcataaagagatctcaaaaaagctcttcct |
37382664 |
T |
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| Q |
203 |
gctcctaaccttgtatt |
219 |
Q |
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| T |
37382663 |
gctcctaactttgtatt |
37382647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 60 - 219
Target Start/End: Complemental strand, 37360650 - 37360491
Alignment:
| Q |
60 |
aatactttgtagatttaaaatcatcatgattgttgtcaatgatatgataaaaatgttgagacagtaagttagtagtgccagtaccaagatcaacacccca |
159 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||| |
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| T |
37360650 |
aatactttgtagatttcaaatcatcatgattgttgtcaataacatgataaaaatgttgagacagttagttagttgtgcgagtaccaagatcaacacccca |
37360551 |
T |
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| Q |
160 |
agcagcatactgctcatgaagagatctcaaaaaagctctccctgctcctaaccttgtatt |
219 |
Q |
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| T |
37360550 |
agcagcatactgctcatgaagggatctcaaaaatgctttcccggctcctaacgttgtatt |
37360491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 60 - 219
Target Start/End: Original strand, 37367412 - 37367571
Alignment:
| Q |
60 |
aatactttgtagatttaaaatcatcatgattgttgtcaatgatatgataaaaatgttgagacagtaagttagtagtgccagtaccaagatcaacacccca |
159 |
Q |
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|||||||| ||||||| ||||||||||||||||||||||| | |||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||| |
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| T |
37367412 |
aatactttttagatttcaaatcatcatgattgttgtcaataacatgataaaaatgttgagacagttagttagttgtgcgagtaccaagatcaacacccca |
37367511 |
T |
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| Q |
160 |
agcagcatactgctcatgaagagatctcaaaaaagctctccctgctcctaaccttgtatt |
219 |
Q |
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| T |
37367512 |
agcagcatactgctcatgaagggatctcaaaaatgctttcccggctcctaacgttgtatt |
37367571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 140 - 211
Target Start/End: Original strand, 37386342 - 37386414
Alignment:
| Q |
140 |
gtaccaagatcaacacccc-aagcagcatactgctcatgaagagatctcaaaaaagctctccctgctcctaac |
211 |
Q |
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| T |
37386342 |
gtaccaagatcaacacccccaagcagcatactgctcataaagggatctcaaaaaagctctccctgcacctaac |
37386414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 140 - 210
Target Start/End: Original strand, 41229855 - 41229925
Alignment:
| Q |
140 |
gtaccaagatcaacaccccaagcagcatactgctcatgaagagatctcaaaaaagctctccctgctcctaa |
210 |
Q |
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| T |
41229855 |
gtaccaagatcaacaccccaagcagcatactgctcataaagggatctcaaaaacgctctccctgcccctaa |
41229925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 41229716 - 41229754
Alignment:
| Q |
32 |
aaattaatacatgaatgtataatcaatcaatactttgta |
70 |
Q |
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| T |
41229716 |
aaattaacacatgaatgtataatcaatcaatactttgta |
41229754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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