View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14642_low_7 (Length: 522)
Name: NF14642_low_7
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14642_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 186 - 507
Target Start/End: Original strand, 1942073 - 1942394
Alignment:
| Q |
186 |
actttgcaggaggctagagggtgatagatttttcacaagcaactacaatgaggagacatacactgaaaagggtttggaatgggtgaacacaactgaaacc |
285 |
Q |
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| T |
1942073 |
actttgcaggaggctagagggtgatagatttttcacaagcaactacaatgaggagacatacactgaaaagggtttgaaatgggtgaacacaactgaaacc |
1942172 |
T |
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| Q |
286 |
ttaaaggatgtgattgatcgtcactacccaaatatgacacacaaatggttgaatgcttcaagtgctttctctgtttgggatgcaccaccaaacaaacaca |
385 |
Q |
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| T |
1942173 |
ttaaaggatgtgattgatcgtcactacccaaaaatgacaaacaaatggttgaatgcttcaagtgctttctctgtttgggatgcaccaccaaacaaacaca |
1942272 |
T |
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| Q |
386 |
accctattccaatttacttgcgtgttcctagttaatcagtttaagttagcattatttctatgttgtatttctgtttacacatacacatttatgtttatgt |
485 |
Q |
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| T |
1942273 |
accctattccaatttacttgcgtgttcctagttaatcaatttaagttagcattatatctatgttgtatttgtgtttatacatacacatttatgtttatgt |
1942372 |
T |
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| Q |
486 |
gtatgtattggtgtttatttat |
507 |
Q |
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| T |
1942373 |
gtatgtattggtgtttatttat |
1942394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 186 - 423
Target Start/End: Original strand, 1956992 - 1957229
Alignment:
| Q |
186 |
actttgcaggaggctagagggtgatagatttttcacaagcaactacaatgaggagacatacactgaaaagggtttggaatgggtgaacacaactgaaacc |
285 |
Q |
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|||||| ||||||||||||| |||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| | | |
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| T |
1956992 |
actttgaaggaggctagaggctgataggtttttcacaagcaacttcaatgaggagacatacaccaaaaagggtttggaatgggtgaacacaactgagagc |
1957091 |
T |
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| Q |
286 |
ttaaaggatgtgattgatcgtcactacccaaatatgacacacaaatggttgaatgcttcaagtgctttctctgtttgggatgcaccaccaaacaaacaca |
385 |
Q |
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| T |
1957092 |
ttaaaggaagtgattgatcgtcaccatccaggaatgacacaaaagtggttgaatgcttcaagtgctttctctgtttgggatgcacccccaaacaaattca |
1957191 |
T |
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| Q |
386 |
accctattccaatttacttgcgtgttcctagttaatca |
423 |
Q |
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| T |
1957192 |
atccaattccactttatcttcgtattcctagttaatca |
1957229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 186 - 415
Target Start/End: Original strand, 1928096 - 1928325
Alignment:
| Q |
186 |
actttgcaggaggctagagggtgatagatttttcacaagcaactacaatgaggagacatacactgaaaagggtttggaatgggtgaacacaactgaaacc |
285 |
Q |
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|||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||| || |||||||| ||||||||||| | | |
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| T |
1928096 |
actttgtaggaggctagaaggtgatagatttttcacaagctactacaatgaggagacatacaccaaaaaggggttagaatgggtcaacacaactgagagc |
1928195 |
T |
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| Q |
286 |
ttaaaggatgtgattgatcgtcactacccaaatatgacacacaaatggttgaatgcttcaagtgctttctctgtttgggatgcaccaccaaacaaacaca |
385 |
Q |
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||||| |||||||||||||||||| | ||| | |||||| |||||||| |||| |||| |||||||||||||||||||| |||| ||| |||||||| |
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| T |
1928196 |
ttaaaagatgtgattgatcgtcaccatccacaaatgacaaacaaatggatgaactcttccagtgctttctctgtttgggactcaccctcaatcaaacaca |
1928295 |
T |
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| Q |
386 |
accctattccaatttacttgcgtgttccta |
415 |
Q |
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| ||||||||| |||||| ||| |||||| |
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| T |
1928296 |
atcctattccatgttacttacgtattccta |
1928325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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