View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14642_low_74 (Length: 208)
Name: NF14642_low_74
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14642_low_74 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 22 - 190
Target Start/End: Original strand, 1245710 - 1245878
Alignment:
| Q |
22 |
atcgtcttcatcacgtttatctcctcggctttacaagattcaaaagcagcattcacttccacaaaacatggaggcgaggaagttggataaagggaagaaa |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1245710 |
atcgtcttcatcacgtttatctcctcggctttacaagattcaaaagcagcattcacttccacaaaacatggaggcgaggaagttggataaagggaagaaa |
1245809 |
T |
|
| Q |
122 |
attctaatgcctagtattagtagcctttttcctaggnnnnnnngcttgcaggttgagagaggacttcct |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1245810 |
attctaatgcctagtattagtagcctttttcctaggaaaaaaagcttgcaggttgagagaggacttcct |
1245878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 42010365 - 42010540
Alignment:
| Q |
15 |
catcatcatcgtcttcatcacgtttatctcctcggctttacaagattcaaaagcagcattcacttccacaaaacatggaggcgaggaagttggataaagg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42010365 |
catcatcatcgtcttcatcacgtttatctcctcggctttacaagattcaaaagcagcattcacttccacaaaacatggaggcgaggaagttggaaaaagg |
42010464 |
T |
|
| Q |
115 |
gaagaaaattctaatgcctagtattagtagcctttttcctaggnnnnnnngcttgcaggttgagagaggacttcct |
190 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42010465 |
gaagaaaattctattgcctagtattagtagcttttttcctaggaaaaaaagcttgcaggttgagagaggacttcct |
42010540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University