View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14642_low_8 (Length: 516)
Name: NF14642_low_8
Description: NF14642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14642_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 7 - 506
Target Start/End: Original strand, 805405 - 805904
Alignment:
| Q |
7 |
cagacatcgatactgaacattacacgatcactgacagtgacacactgacacaaatacaaccttgaaagttgaaaccatgacataattaatttagttgtag |
106 |
Q |
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| T |
805405 |
cagacatcgatactgaacattacacgatcactgacagtgatacactgacacaaatacaaccttgaaagttgaaaccatgacataattaatttagttgtag |
805504 |
T |
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| Q |
107 |
gtgtgagatatcaaaagattttagatccaaatgagataattaatgtagtttggtaaagtatatgtgatttaatgctcagagtgcagcctacctgcctata |
206 |
Q |
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| T |
805505 |
gtgtgagatatcaaaagattttagatccaaatgagataattaatgtagtttggtaaagtatatgtgatttaatgctcagagtgcagcctacctgcctata |
805604 |
T |
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| Q |
207 |
gtagtgtgtgttataaattggctcttcgcagctattttatcatgctcttcacaggacatttgtagcatcttacaaccctgtcacaaagaagtagggtgaa |
306 |
Q |
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| T |
805605 |
gtagtgtgtgttataaattggctcttcgcagctattttatcatgctcttcacaggacatttgtagcatcttacaaccctgtcaaaaagaagtagggtgaa |
805704 |
T |
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| Q |
307 |
ttaatcacctcggattaatctgagacacatgaaattcttttagtgcttgttttggatgcaagctgtagtttcccaatgttgaagctataagtgtgttaaa |
406 |
Q |
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| T |
805705 |
ttaatcacctcggattaatctgagacacatgaaattcttttagtgcttgttttggatgcaagctgtagtttcccaatgttgaagctataagtgtgttaaa |
805804 |
T |
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| Q |
407 |
aacttgctcacatgggcagagaacctcatgcagtagttataaaatttatgaacttacctttgtgtcattttcctatcagttgttttgagttgtgatttct |
506 |
Q |
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| T |
805805 |
aacttgctcacatgggcagagaacctcatgcagtagttataaaatttatgaacttacctttgtgtcattttcttatcagttgttttgagttgtgatttct |
805904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 1266294 - 1266242
Alignment:
| Q |
92 |
ttaatttagttgtaggtgtgagatatcaaaagattttagatccaaatgagata |
144 |
Q |
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| T |
1266294 |
ttaatttagttgtaggtgtgagatatcaaaagattttagatctaaatgagata |
1266242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 8e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 171 - 354
Target Start/End: Original strand, 36053791 - 36053975
Alignment:
| Q |
171 |
tgatttaatgctcagagtgcagcctacctgcctatagtagtgtgtgttataaattggctcttcgcagctattttatcatgctcttcacaggacatttgta |
270 |
Q |
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| T |
36053791 |
tgatttaatgctcagattgcagcctacctgcctatagt---gtgtgttataaattggctctttgcagctattttatcatgctcttcacaggacatttgta |
36053887 |
T |
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| Q |
271 |
gcatcttacaaccctgtcacaaagaagtagggt----gaattaatcacctcggattaatctgagacacatgaaattcttttagtgctt |
354 |
Q |
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| T |
36053888 |
gcatcttacaaccctgtccgggaaaagtaaggtcaaataattaatcacctcggataaatgtgagtcacaataaattcttttagtgctt |
36053975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 424 - 485
Target Start/End: Original strand, 36054081 - 36054142
Alignment:
| Q |
424 |
agagaacctcatgcagtagttataaaatttatgaacttacctttgtgtcattttcctatcag |
485 |
Q |
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| T |
36054081 |
agagaacctcatgcataagttataacatttatcaccttactcttgtgtcattttcctatcag |
36054142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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