View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14643_high_1 (Length: 241)

Name: NF14643_high_1
Description: NF14643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14643_high_1
NF14643_high_1
[»] chr7 (22 HSPs)
chr7 (1-122)||(49042712-49042833)
chr7 (150-234)||(8080373-8080454)
chr7 (151-234)||(38267070-38267150)
chr7 (151-233)||(19436178-19436257)
chr7 (150-234)||(7389418-7389499)
chr7 (150-234)||(19329871-19329952)
chr7 (150-234)||(38837246-38837327)
chr7 (150-237)||(3434591-3434675)
chr7 (150-234)||(3784024-3784105)
chr7 (150-234)||(35137562-35137643)
chr7 (150-237)||(35522905-35522989)
chr7 (150-233)||(36361904-36361984)
chr7 (152-233)||(36362057-36362135)
chr7 (150-234)||(4999504-4999585)
chr7 (151-234)||(3694397-3694477)
chr7 (150-228)||(8238242-8238317)
chr7 (150-234)||(40957736-40957817)
chr7 (171-234)||(32951483-32951543)
chr7 (150-228)||(41915770-41915845)
chr7 (196-234)||(31735949-31735987)
chr7 (150-234)||(46033791-46033872)
chr7 (150-228)||(38044226-38044301)
[»] chr8 (18 HSPs)
chr8 (150-234)||(14547951-14548032)
chr8 (150-234)||(23122587-23122668)
chr8 (150-234)||(15197362-15197443)
chr8 (151-234)||(12831077-12831157)
chr8 (150-234)||(504111-504192)
chr8 (150-234)||(40423933-40424014)
chr8 (150-229)||(15048177-15048252)
chr8 (152-234)||(10621077-10621156)
chr8 (152-234)||(34012286-34012365)
chr8 (150-234)||(5957859-5957940)
chr8 (154-234)||(8841422-8841499)
chr8 (150-234)||(37038508-37038589)
chr8 (150-234)||(43414571-43414652)
chr8 (152-234)||(1179930-1180009)
chr8 (151-228)||(10284627-10284701)
chr8 (152-234)||(44507077-44507156)
chr8 (165-234)||(9122229-9122295)
chr8 (150-234)||(4854853-4854934)
[»] chr1 (21 HSPs)
chr1 (150-237)||(44548363-44548447)
chr1 (150-234)||(8346378-8346459)
chr1 (150-234)||(2581944-2582025)
chr1 (150-234)||(3000348-3000429)
chr1 (150-234)||(9474866-9474947)
chr1 (150-234)||(27564725-27564806)
chr1 (150-234)||(32813276-32813357)
chr1 (150-234)||(38595183-38595264)
chr1 (150-234)||(41758834-41758915)
chr1 (151-237)||(26440764-26440847)
chr1 (150-231)||(48716275-48716353)
chr1 (151-234)||(43162-43242)
chr1 (152-234)||(47452310-47452389)
chr1 (150-234)||(38632311-38632392)
chr1 (150-234)||(50630487-50630568)
chr1 (150-234)||(51898673-51898754)
chr1 (150-233)||(45044551-45044631)
chr1 (151-234)||(49811517-49811597)
chr1 (151-231)||(13414791-13414868)
chr1 (150-228)||(5958996-5959071)
chr1 (150-237)||(26274461-26274545)
[»] chr6 (13 HSPs)
chr6 (150-234)||(32869707-32869788)
chr6 (150-234)||(22880648-22880729)
chr6 (150-234)||(11427647-11427728)
chr6 (150-234)||(17598583-17598664)
chr6 (150-233)||(29857856-29857936)
chr6 (150-234)||(6209455-6209536)
chr6 (150-234)||(31109390-31109471)
chr6 (150-234)||(31976277-31976358)
chr6 (152-234)||(23128117-23128196)
chr6 (150-233)||(31110752-31110830)
chr6 (152-192)||(946407-946447)
chr6 (150-228)||(4231577-4231652)
chr6 (194-234)||(30870084-30870124)
[»] chr4 (20 HSPs)
chr4 (150-234)||(48183039-48183120)
chr4 (150-234)||(29234235-29234316)
chr4 (150-234)||(41236376-41236457)
chr4 (165-237)||(41823926-41823995)
chr4 (150-234)||(50052418-50052499)
chr4 (151-234)||(480437-480517)
chr4 (150-233)||(11511453-11511533)
chr4 (151-234)||(54473523-54473603)
chr4 (150-234)||(6034073-6034154)
chr4 (151-234)||(31910222-31910302)
chr4 (165-234)||(42044357-42044423)
chr4 (150-234)||(24995097-24995178)
chr4 (150-234)||(29239915-29239996)
chr4 (151-234)||(23608265-23608345)
chr4 (150-228)||(3481683-3481758)
chr4 (150-228)||(29977914-29977989)
chr4 (165-234)||(53352556-53352622)
chr4 (152-234)||(40574810-40574889)
chr4 (150-228)||(55475220-55475295)
chr4 (150-189)||(50526203-50526242)
[»] chr3 (22 HSPs)
chr3 (150-234)||(33644229-33644310)
chr3 (150-234)||(53982040-53982121)
chr3 (150-234)||(31456718-31456799)
chr3 (150-234)||(52629329-52629410)
chr3 (150-237)||(48587078-48587162)
chr3 (150-234)||(17470434-17470515)
chr3 (150-234)||(26141522-26141603)
chr3 (150-234)||(49607443-49607524)
chr3 (150-234)||(54868885-54868966)
chr3 (150-233)||(11095346-11095424)
chr3 (152-233)||(27714882-27714960)
chr3 (154-234)||(8076426-8076503)
chr3 (150-234)||(41189754-41189835)
chr3 (151-234)||(11347912-11347992)
chr3 (151-234)||(51419350-51419430)
chr3 (152-234)||(20764905-20764984)
chr3 (150-234)||(26754724-26754805)
chr3 (151-234)||(33118841-33118921)
chr3 (150-234)||(47531894-47531975)
chr3 (171-234)||(11907421-11907481)
chr3 (151-192)||(36707453-36707494)
chr3 (194-234)||(48375696-48375736)
[»] chr2 (22 HSPs)
chr2 (150-234)||(20700844-20700925)
chr2 (151-234)||(10249372-10249452)
chr2 (150-234)||(9058509-9058590)
chr2 (150-234)||(17473049-17473130)
chr2 (150-234)||(28381645-28381726)
chr2 (150-234)||(28863484-28863565)
chr2 (150-234)||(40613892-40613973)
chr2 (150-237)||(7465722-7465806)
chr2 (151-234)||(13438373-13438453)
chr2 (151-234)||(32505638-32505718)
chr2 (150-234)||(33436090-33436171)
chr2 (150-234)||(38273132-38273213)
chr2 (150-234)||(40701507-40701588)
chr2 (150-234)||(42257222-42257303)
chr2 (150-233)||(5574479-5574559)
chr2 (150-234)||(19930810-19930891)
chr2 (150-234)||(30915492-30915573)
chr2 (151-234)||(4060715-4060795)
chr2 (150-228)||(27864733-27864808)
chr2 (150-234)||(2533153-2533233)
chr2 (196-234)||(36168908-36168946)
chr2 (162-228)||(38732395-38732458)
[»] chr5 (17 HSPs)
chr5 (150-234)||(2740303-2740384)
chr5 (150-234)||(13811681-13811762)
chr5 (150-234)||(18520874-18520955)
chr5 (150-234)||(28177804-28177885)
chr5 (150-234)||(36732932-36733013)
chr5 (150-234)||(6679727-6679808)
chr5 (150-234)||(40145436-40145517)
chr5 (152-234)||(33149628-33149707)
chr5 (161-234)||(15409600-15409670)
chr5 (150-231)||(42414295-42414373)
chr5 (150-234)||(35785228-35785309)
chr5 (150-233)||(26720545-26720625)
chr5 (150-233)||(26990294-26990374)
chr5 (150-234)||(14831843-14831924)
chr5 (150-234)||(35943882-35943963)
chr5 (171-236)||(31132394-31132456)
chr5 (165-233)||(31009032-31009097)
[»] scaffold0237 (1 HSPs)
scaffold0237 (150-233)||(4058-4138)
[»] scaffold0321 (1 HSPs)
scaffold0321 (150-234)||(10099-10180)
[»] scaffold1268 (1 HSPs)
scaffold1268 (150-234)||(919-1000)
[»] scaffold1267 (1 HSPs)
scaffold1267 (150-234)||(919-1000)
[»] scaffold0316 (1 HSPs)
scaffold0316 (171-233)||(17104-17163)


Alignment Details
Target: chr7 (Bit Score: 110; Significance: 1e-55; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 49042712 - 49042833
Alignment:
Q  1 tgcgtttggagcaagctcaactgtcatttctttatagggaaaattacaaaatttgtttcaacggaagctgtccctttcctttctttcattattaaatcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  49042712 tgcgtttggagcaagctcaactgtcatttctttatagggaaaattacaaaatttgcttcaacggaagctgtccctctcctttctttcattattaaatcaa 49042811  T
Q  101 aagtttaaatccattaatcttt 122  Q
    ||||||||||||||| ||||||    
T  49042812 aagtttaaatccattcatcttt 49042833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 8080454 - 8080373
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||||||||||||| ||||||||||||||||||   ||| ||||||||||| |||||||||||||||||||||||    
T  8080454 gcaatacaccctttgacacctacataaaaatctgacacgtagt---cacgtggaccccgcacaagcacactttctcttttctctc 8080373  T

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Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 151 - 234
Target Start/End: Original strand, 38267070 - 38267150
Alignment:
Q  151 caatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    ||||||||| ||||||||| ||||||||||||||||||||||   ||| ||||||||||| |||||||||||||||||||||||    
T  38267070 caatacaccctttgacacccacacaaaaatctgacacgtagt---cacgtggaccccgcacaagcacactttctcttttctctc 38267150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 151 - 233
Target Start/End: Complemental strand, 19436257 - 19436178
Alignment:
Q  151 caatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctct 233  Q
    ||||||||| ||||||||| ||||||||||||||||||||||   ||| |||| |||||||||||||||||||||||||||||    
T  19436257 caatacaccttttgacacccacacaaaaatctgacacgtagt---cacgtggatcccgcataagcacactttctcttttctct 19436178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 7389418 - 7389499
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||  ||||||||| ||||||||||||||||||||||   ||| ||||||||||| |||||||||||||||||||||||    
T  7389418 gcaatacactctttgacacccacacaaaaatctgacacgtagt---cacgtggaccccgcacaagcacactttctcttttctctc 7389499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 19329871 - 19329952
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||||||||| |||||||||||||||||   ||| |||| ||||||||||| |||||||||||||||||||||||    
T  19329871 gcaatacaccttttgacacccacacaaaaatctgacac---gtaatcacgtggaccccgcacaagcacactttctcttttctctc 19329952  T

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Target: chr7; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 38837246 - 38837327
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||  ||||||||||||||||||||||||||||   ||| ||||||||||| |||||||||||||||||||||||    
T  38837246 gcaatacacccttgtacacctacacaaaaatctgacacgtagt---cacgtggaccccgcacaagcacactttctcttttctctc 38837327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 150 - 237
Target Start/End: Original strand, 3434591 - 3434675
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctcttc 237  Q
    |||||||||| ||||||||| ||||||||| ||||||||||||   ||| |||| |||||| ||||||||||||||||||||||||||    
T  3434591 gcaatacaccctttgacacccacacaaaaaactgacacgtagt---cacgtggatcccgcacaagcacactttctcttttctctcttc 3434675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 3784024 - 3784105
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||| | ||||||||| ||||||||||||||||||||||   ||| |||| |||||| |||||||||||||||||||||||    
T  3784024 gcaatacatcttttgacacccacacaaaaatctgacacgtagt---cacgtggatcccgcacaagcacactttctcttttctctc 3784105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 35137562 - 35137643
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||||||||| |||||||||||| |||||||||   ||| ||||||||||| || ||||||||||||||||||||    
T  35137562 gcaatacaccctttgacacccacacaaaaatctaacacgtagt---cacgtggaccccgcacaaacacactttctcttttctctc 35137643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 150 - 237
Target Start/End: Original strand, 35522905 - 35522989
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctcttc 237  Q
    |||||||||||||| ||||| ||||||||||||||||||| |    || ||||| |||||| ||||||||||||||||||||||||||    
T  35522905 gcaatacaccatttaacacccacacaaaaatctgacacgtggc---catatggatcccgcacaagcacactttctcttttctctcttc 35522989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 150 - 233
Target Start/End: Complemental strand, 36361984 - 36361904
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctct 233  Q
    |||||||| | ||||||||| ||||||||||||||||||||||   ||| |||||||| || ||||||||||||||||||||||    
T  36361984 gcaatacatcctttgacacccacacaaaaatctgacacgtagt---cacgtggaccccacacaagcacactttctcttttctct 36361904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 152 - 233
Target Start/End: Original strand, 36362057 - 36362135
Alignment:
Q  152 aatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctct 233  Q
    |||||| | ||||||||| ||||||||||||||||||||||   ||| |||||||| || ||||||||||||||||||||||    
T  36362057 aatacatcctttgacacccacacaaaaatctgacacgtagt---cacgtggaccccacacaagcacactttctcttttctct 36362135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 4999585 - 4999504
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||||||||| |||||||||||||| ||   |||||||| ||||||||||| || ||||||||||||||| ||||    
T  4999585 gcaatacaccttttgacacccacacaaaaatctgatac---gtagtcacgtggaccccgcacaaacacactttctcttttatctc 4999504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 151 - 234
Target Start/End: Original strand, 3694397 - 3694477
Alignment:
Q  151 caatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    ||||||||| ||| ||||| |||||||||||||||||   |||||||  |||| |||||| |||||||||||||||||||||||    
T  3694397 caatacaccttttaacacccacacaaaaatctgacac---gtagtcatgtggatcccgcacaagcacactttctcttttctctc 3694477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 8238242 - 8238317
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttt 228  Q
    |||||||||| ||||||||| ||||||||||||||||    ||||||| |||||||||||| ||| |||||||||||||    
T  8238242 gcaatacaccctttgacacccacacaaaaatctgaca---tgtagtcatatggaccccgcacaagtacactttctcttt 8238317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 40957736 - 40957817
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||  ||||| ||| ||||||||||||||||||||||   ||| |||| |||| | |||||||||||||||||||||||    
T  40957736 gcaatacactctttgatacccacacaaaaatctgacacgtagt---cacgtggatcccgtacaagcacactttctcttttctctc 40957817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 234
Target Start/End: Complemental strand, 32951543 - 32951483
Alignment:
Q  171 acacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||||| |||||||||   ||| ||||||||||| |||||||||||||||||||||||    
T  32951543 acacaaaaatctaacacgtagt---cacgtggaccccgcacaagcacactttctcttttctctc 32951483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 41915770 - 41915845
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttt 228  Q
    ||||||||||  |||||||||||||||||||||||||    || | || |||||||||||| ||| |||||||||||||    
T  41915770 gcaatacaccccttgacacctacacaaaaatctgaca---tgtggccatatggaccccgcacaagtacactttctcttt 41915845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 234
Target Start/End: Original strand, 31735949 - 31735987
Alignment:
Q  196 cacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||| |||||| |||||||||||||||||||||||    
T  31735949 cacatggatcccgcacaagcacactttctcttttctctc 31735987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 46033872 - 46033791
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||| ||||| ||| |||||||||||||   || |||||||| || ||||| ||||| | |||||||||||||||    
T  46033872 gcaatacaccctttaacacccacataaaaatctgacac---gtggtcacatgaactccgcacaagcatattttctcttttctctc 46033791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 38044226 - 38044301
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttt 228  Q
    ||||||||||  |||||| | ||||||||||||||||    |||| || |||||||||||| ||| |||||||||||||    
T  38044226 gcaatacaccccttgacatccacacaaaaatctgaca---tgtagccatatggaccccgcacaagtacactttctcttt 38044301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 14547951 - 14548032
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||||||||||||| |||||||||||||||||   |||||||| ||||||||||| |||||||||||||||||||||||    
T  14547951 gcaatacaccatttgacacccacacaaaaatctgacac---gtagtcacgtggaccccgcacaagcacactttctcttttctctc 14548032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 23122668 - 23122587
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||||||||| ||||||||||||||||||||||   ||| |||||||||||||||||||||||||||||||||||    
T  23122668 gcaatacaccttttgacacccacacaaaaatctgacacgtagt---cacgtggaccccgcataagcacactttctcttttctctc 23122587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 15197362 - 15197443
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||||||||| ||||||||||||||||||||||   ||| ||||||||||| |||||||||||||||||||||||    
T  15197362 gcaatacaccctttgacacccacacaaaaatctgacacgtagt---cacgtggaccccgcacaagcacactttctcttttctctc 15197443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 151 - 234
Target Start/End: Original strand, 12831077 - 12831157
Alignment:
Q  151 caatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    ||||||||| ||||||||| ||||||||||||||||||||||   ||| ||||||||||| |||||||||||||||||||||||    
T  12831077 caatacaccctttgacacccacacaaaaatctgacacgtagt---cacgtggaccccgcacaagcacactttctcttttctctc 12831157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 504192 - 504111
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||||||||| ||||||||||||||||||   ||||||| ||||||||||| |||||||| ||||||||||||||    
T  504192 gcaatacaccttttgacacccacacaaaaatctgacacg---tagtcacgtggaccccgcacaagcacacattctcttttctctc 504111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 40424014 - 40423933
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||||||| | ||||||||||||||||||||||   ||  ||||||||||| |||||||||||||||||||||||    
T  40424014 gcaatacaccctttgacatccacacaaaaatctgacacgtagt---catgtggaccccgcacaagcacactttctcttttctctc 40423933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 150 - 229
Target Start/End: Complemental strand, 15048252 - 15048177
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctctttt 229  Q
    |||||||||| ||||||||| |||||||||||||||||||||    ||||||||||||||| ||||||||||||||||||    
T  15048252 gcaatacaccctttgacacc-acacaaaaatctgacacgtagc---cacatggaccccgcacaagcacactttctctttt 15048177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 152 - 234
Target Start/End: Complemental strand, 10621156 - 10621077
Alignment:
Q  152 aatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||| ||||||||| |||||||||||||||||   |||| ||||| || |||||| |||||||||||||||||||||||    
T  10621156 aatacaccctttgacacccacacaaaaatctgacac---gtagccacatcgatcccgcacaagcacactttctcttttctctc 10621077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 152 - 234
Target Start/End: Complemental strand, 34012365 - 34012286
Alignment:
Q  152 aatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||| ||||||||| |||||||||| |||||||||||   ||| |||| |||||| |||||||||||||||||||||||    
T  34012365 aatacaccctttgacacccacacaaaaatttgacacgtagt---cacgtggatcccgcacaagcacactttctcttttctctc 34012286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 5957859 - 5957940
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||||||||| |||||||||||||||||   |||||||| |||| |||||| || |||||||||||||| |||||    
T  5957859 gcaatacaccctttgacacccacacaaaaatctgacac---gtagtcacgtggatcccgcacaatcacactttctctttcctctc 5957940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 234
Target Start/End: Complemental strand, 8841499 - 8841422
Alignment:
Q  154 tacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||| ||||||||| |||||||||||| |||||||||   ||| ||||||||||| ||||||||||||||||| |||||    
T  8841499 tacaccctttgacacccacacaaaaatctaacacgtagt---cacgtggaccccgcacaagcacactttctctttcctctc 8841422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 37038508 - 37038589
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||||||||| |||||||||||||||||   |||||||| |||| |||||| ||||||||||||| ||| |||||    
T  37038508 gcaatacaccctttgacacccacacaaaaatctgacac---gtagtcacgtggatcccgcacaagcacactttctatttcctctc 37038589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 43414652 - 43414571
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||| ||||| ||||||||| |||||||||||| |||||| ||   |||||||| |||||| |||||||||||||||||||||||    
T  43414652 gcaacacaccctttgacacccacacaaaaatctaacacgtggt---cacatggatcccgcacaagcacactttctcttttctctc 43414571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 234
Target Start/End: Complemental strand, 1180009 - 1179930
Alignment:
Q  152 aatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||| ||||||||| ||||||||||||||||||||||   ||  ||||  ||||| |||||||||||||||||||||||    
T  1180009 aatacaccctttgacacccacacaaaaatctgacacgtagt---catgtggattccgcacaagcacactttctcttttctctc 1179930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 151 - 228
Target Start/End: Complemental strand, 10284701 - 10284627
Alignment:
Q  151 caatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttt 228  Q
    ||||||||  ||||||||| |||||||||| |||||||||||   ||| ||||||||||| |||||||||||||||||    
T  10284701 caatacactctttgacacccacacaaaaatttgacacgtagt---cacgtggaccccgcacaagcacactttctcttt 10284627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 234
Target Start/End: Complemental strand, 44507156 - 44507077
Alignment:
Q  152 aatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||  ||| ||||| ||||||||||||||||||||||   ||| ||||||||| | ||||| |||||||||||||||||    
T  44507156 aatacactctttaacacccacacaaaaatctgacacgtagt---cacgtggaccccgtacaagcatactttctcttttctctc 44507077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 234
Target Start/End: Original strand, 9122229 - 9122295
Alignment:
Q  165 acacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    ||||| |||||||||||||||| |||||   ||| |||| |||||| |||||||||||||||||||||||    
T  9122229 acacccacacaaaaatctgacatgtagt---cacgtggatcccgcacaagcacactttctcttttctctc 9122295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 4854934 - 4854853
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||| ||||||||| |||||||||| | || |    ||||||||||| ||| |||||||||||||||||||||||    
T  4854934 gcaatacaccctttaacacctacataaaaatctgatatgtggc---cacatggaccctgcacaagcacactttctcttttctctc 4854853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 150 - 237
Target Start/End: Complemental strand, 44548447 - 44548363
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctcttc 237  Q
    |||||||||||||||| ||| ||||||||||||||||||||||   ||| ||||||||||| ||||||||||||||||||||||||||    
T  44548447 gcaatacaccatttgatacccacacaaaaatctgacacgtagt---cacgtggaccccgcacaagcacactttctcttttctctcttc 44548363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 8346459 - 8346378
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||||||||||||| ||||||||||||||||||   ||||||| ||||||| ||| |||||||||||||||||||||||    
T  8346459 gcaatacaccatttgacacccacacaaaaatctgacacg---tagtcacgtggaccctgcacaagcacactttctcttttctctc 8346378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 2581944 - 2582025
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||||||||| |||||||||||||||||   |||||||| ||||||||||| ||||||||||||| |||||||||    
T  2581944 gcaatacaccctttgacacccacacaaaaatctgacac---gtagtcacgtggaccccgcacaagcacactttcttttttctctc 2582025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 3000348 - 3000429
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||||||||| |||||||||||||||||   |||||||| ||||||||| | |||||||||||||||||||||||    
T  3000348 gcaatacaccctttgacacccacacaaaaatctgacac---gtagtcacgtggaccccgtacaagcacactttctcttttctctc 3000429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 9474947 - 9474866
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||||||||| ||||||||||||||||||   ||||||| ||||||||||| || ||||||||||||||||||||    
T  9474947 gcaatacaccctttgacacccacacaaaaatctgacacg---tagtcacgtggaccccgcacaaacacactttctcttttctctc 9474866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 27564806 - 27564725
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||||||||| |||||||||||||||||   ||| |||| ||||||||||| |||||||||||||||||||||||    
T  27564806 gcaatacaccttttgacacccacacaaaaatctgacac---gtaatcacgtggaccccgcacaagcacactttctcttttctctc 27564725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 32813276 - 32813357
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||| ||||| ||||||||||||||||||| ||   ||||||||||||||| |||||||||||||||||||||||    
T  32813276 gcaatacaccctttaacacccacacaaaaatctgacacgtggt---cacatggaccccgcacaagcacactttctcttttctctc 32813357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 38595183 - 38595264
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||||||||| |||||||||||||||||   |||||||| ||||||||| | |||||||||||||||||||||||    
T  38595183 gcaatacaccctttgacacccacacaaaaatctgacac---gtagtcacgtggaccccgtacaagcacactttctcttttctctc 38595264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 41758834 - 41758915
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||||||| | |||||||||||||||||||||   |||||||||||||||| || ||||||||||||||||||||    
T  41758834 gcaatacaccctttgacaaccacacaaaaatctgacacgtag---tcacatggaccccgcacaaacacactttctcttttctctc 41758915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 151 - 237
Target Start/End: Original strand, 26440764 - 26440847
Alignment:
Q  151 caatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctcttc 237  Q
    ||||||||| ||| ||||| ||||||||||||||||||| |    |||||||| |||||||||||||||||||||||||||||||||    
T  26440764 caatacaccctttaacacccacacaaaaatctgacacgtggc---cacatggatcccgcataagcacactttctcttttctctcttc 26440847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 150 - 231
Target Start/End: Complemental strand, 48716353 - 48716275
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttct 231  Q
    |||||||||||||||||| | ||||||||||||||||||   ||||||| ||||||||||| ||||||||||| ||||||||    
T  48716353 gcaatacaccatttgacatccacacaaaaatctgacacg---tagtcacgtggaccccgcacaagcacactttatcttttct 48716275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 151 - 234
Target Start/End: Original strand, 43162 - 43242
Alignment:
Q  151 caatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    ||||||| | ||||||||| ||||||||||||||||||||||   ||| ||||| ||||| |||||||||||||||||||||||    
T  43162 caatacatcctttgacacccacacaaaaatctgacacgtagt---cacgtggactccgcacaagcacactttctcttttctctc 43242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 152 - 234
Target Start/End: Complemental strand, 47452389 - 47452310
Alignment:
Q  152 aatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||| ||||||||| |||||||||||| |||||||||   ||| |||| |||||| |||||||||||||||||||||||    
T  47452389 aatacaccctttgacacccacacaaaaatctaacacgtagt---cacgtggatcccgcacaagcacactttctcttttctctc 47452310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 38632392 - 38632311
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||| ||| | ||||||||||||||||||||||   ||| ||||||||||| ||||||||||| |||||||||||    
T  38632392 gcaatacaccttttaacatccacacaaaaatctgacacgtagt---cacgtggaccccgcacaagcacactttttcttttctctc 38632311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 50630487 - 50630568
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||| | ||||  ||| ||||||||||||||||||||||   ||| ||||||||||| |||||||||||||||||||||||    
T  50630487 gcaatacatcctttgttacccacacaaaaatctgacacgtagt---cacgtggaccccgcacaagcacactttctcttttctctc 50630568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 51898754 - 51898673
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||||||||| ||||||||||||||||||   ||||||| |||| |||||| ||||||||||||| ||| |||||    
T  51898754 gcaatacaccctttgacacccacacaaaaatctgacacg---tagtcacgtggatcccgcacaagcacactttctatttcctctc 51898673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 233
Target Start/End: Complemental strand, 45044631 - 45044551
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctct 233  Q
    |||||||||||||||||||| | ||||||||||||||    |||| ||||||||||||||| || |||| ||||||||||||||    
T  45044631 gcaatacaccatttgacacccatacaaaaatctgaca---tgtagccacatggaccccgcacaaacacattttctcttttctct 45044551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 151 - 234
Target Start/End: Complemental strand, 49811597 - 49811517
Alignment:
Q  151 caatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    ||||||||||||||||| | |||||||||||||||||||||    || || ||| ||||| |||||||||||||||||||||||    
T  49811597 caatacaccatttgacatccacacaaaaatctgacacgtagc---catatagactccgcacaagcacactttctcttttctctc 49811517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 151 - 231
Target Start/End: Original strand, 13414791 - 13414868
Alignment:
Q  151 caatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttct 231  Q
    ||||||||| ||||||||| |||||||||||| ||||   |||||||| |||||||| || ||||||| ||||||||||||    
T  13414791 caatacaccctttgacacccacacaaaaatctaacac---gtagtcacgtggaccccacacaagcacattttctcttttct 13414868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 228
Target Start/End: Complemental strand, 5959071 - 5958996
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttt 228  Q
    ||||||||||  |||||||| ||||||||||||||||    || |||| |||||||||||| ||| |||||||||||||    
T  5959071 gcaatacacctcttgacacccacacaaaaatctgaca---tgtggtcatatggaccccgcacaagtacactttctcttt 5958996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 237
Target Start/End: Original strand, 26274461 - 26274545
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctcttc 237  Q
    |||||||| ||||||||| | ||| |||||||||||||    ||||||| |||| || ||| ||| ||||||| ||||||||||||||    
T  26274461 gcaatacatcatttgacatccacagaaaaatctgacac---atagtcacgtggatcctgcacaagtacactttttcttttctctcttc 26274545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 32869707 - 32869788
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||||||||| ||||||||||||||||||||||   ||| ||||||||||| |||||||||||||||||||||||    
T  32869707 gcaatacaccctttgacacccacacaaaaatctgacacgtagt---cacgtggaccccgcacaagcacactttctcttttctctc 32869788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 22880729 - 22880648
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||||||||| |||||||| |||||||||||||   ||| ||||||||||| |||||||||||||||||||||||    
T  22880729 gcaatacaccctttgacacccacacaaaattctgacacgtagt---cacgtggaccccgcacaagcacactttctcttttctctc 22880648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 11427647 - 11427728
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||| | ||||||||| ||||||||||||||||||||||   ||| |||| |||||| |||||||||||||||||||||||    
T  11427647 gcaatacatcctttgacacccacacaaaaatctgacacgtagt---cacgtggatcccgcacaagcacactttctcttttctctc 11427728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 17598583 - 17598664
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||| | ||||||||| ||||||||||||||||||| ||   ||| ||||||||||| |||||||||||||||||||||||    
T  17598583 gcaatacatcttttgacacccacacaaaaatctgacacgttgt---cacgtggaccccgcacaagcacactttctcttttctctc 17598664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 150 - 233
Target Start/End: Original strand, 29857856 - 29857936
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctct 233  Q
    |||||||||| ||| ||||| |||||||||||||||||   ||||| || |||| |||||||||||||||||||||||||||||    
T  29857856 gcaatacaccttttaacacccacacaaaaatctgacac---gtagttacgtggatcccgcataagcacactttctcttttctct 29857936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 6209536 - 6209455
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    ||||||||| |||||||||  ||||||||||||| ||||||||   ||| |||||||||||  ||||||||||||||||||||||    
T  6209536 gcaatacactatttgacactcacacaaaaatctgtcacgtagt---cacgtggaccccgcactagcacactttctcttttctctc 6209455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 31109471 - 31109390
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||||||| | ||||||||||||||||||   ||||||| | ||||||||| ||| |||||||||||||||||||    
T  31109471 gcaatacaccctttgacatccacacaaaaatctgacacg---tagtcacgtagaccccgcaaaagtacactttctcttttctctc 31109390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 31976277 - 31976358
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||| ||| ||| ||||| ||||||||||||||||||| ||   |||||| |||||||| |||||||||||||||||||||||    
T  31976277 gcaatataccctttaacacccacacaaaaatctgacacgtggt---cacatgaaccccgcacaagcacactttctcttttctctc 31976358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 234
Target Start/End: Complemental strand, 23128196 - 23128117
Alignment:
Q  152 aatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||| | ||||||||| ||||||||||||||||||   ||||||| |||| ||| || |||||||||||||||||||||||    
T  23128196 aatacatcctttgacacccacacaaaaatctgacacg---tagtcacgtggatcccacacaagcacactttctcttttctctc 23128117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 233
Target Start/End: Complemental strand, 31110830 - 31110752
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctct 233  Q
    |||||||||| ||||||||   |||||||||||||||||||     ||||||||||| ||| ||||||||||||||||||||||    
T  31110830 gcaatacaccctttgacact--cacaaaaatctgacacgtaac---cacatggaccctgcacaagcacactttctcttttctct 31110752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 946407 - 946447
Alignment:
Q  152 aatacaccatttgacacctacacaaaaatctgacacgtagt 192  Q
    |||||||| |||||||||||| |||||||||||||| ||||    
T  946407 aatacaccctttgacacctacccaaaaatctgacacctagt 946447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 4231577 - 4231652
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttt 228  Q
    ||||||||||  ||| |||| ||||||||||||||||||| |    || |||||||||||| ||| |||||||||||||    
T  4231577 gcaatacaccccttgccacccacacaaaaatctgacacgtggc---catatggaccccgcacaagtacactttctcttt 4231652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 30870084 - 30870124
Alignment:
Q  194 gtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    ||||||||||||||||| ||||||| ||||||||| |||||    
T  30870084 gtcacatggaccccgcacaagcacattttctctttcctctc 30870124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 48183120 - 48183039
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||||||||| ||||||||||||||||||||||   ||| ||||||||||| |||||||||||||||||||||||    
T  48183120 gcaatacaccctttgacacccacacaaaaatctgacacgtagt---cacgtggaccccgcacaagcacactttctcttttctctc 48183039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 29234316 - 29234235
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||||| |||| |||||||||||||||||||||   ||| ||||||||||| |||||||||||||||||||||||    
T  29234316 gcaatacaccctttgataccttcacaaaaatctgacacgtagt---cacgtggaccccgcacaagcacactttctcttttctctc 29234235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 41236376 - 41236457
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||||||| | ||||||||||||||||||||||   ||| ||||||||||| |||||||||||||||||||||||    
T  41236376 gcaatacaccttttgacatccacacaaaaatctgacacgtagt---cacgtggaccccgcacaagcacactttctcttttctctc 41236457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 165 - 237
Target Start/End: Original strand, 41823926 - 41823995
Alignment:
Q  165 acacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctcttc 237  Q
    ||||| |||||||||||||||||||||   |||||||||||||||| ||||||||||||||||||||||||||    
T  41823926 acacccacacaaaaatctgacacgtag---tcacatggaccccgcacaagcacactttctcttttctctcttc 41823995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 50052499 - 50052418
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||||||||| ||||||||||||||||||   ||||||| ||||||||||| ||||||||||||||||| |||||    
T  50052499 gcaatacaccctttgacacccacacaaaaatctgacacg---tagtcacgtggaccccgcacaagcacactttctctttcctctc 50052418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 151 - 234
Target Start/End: Complemental strand, 480517 - 480437
Alignment:
Q  151 caatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    ||||||||| ||||||||| ||||||||||||||||||   ||||||| ||||||||| | |||||||||||||||||||||||    
T  480517 caatacaccctttgacacccacacaaaaatctgacacg---tagtcacgtggaccccgtacaagcacactttctcttttctctc 480437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 150 - 233
Target Start/End: Complemental strand, 11511533 - 11511453
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctct 233  Q
    |||||||||| ||||||||| ||| ||||||||||||||||||   ||| ||||||||||| ||||||||||||||||||||||    
T  11511533 gcaatacaccctttgacacccacataaaaatctgacacgtagt---cacgtggaccccgcacaagcacactttctcttttctct 11511453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 151 - 234
Target Start/End: Complemental strand, 54473603 - 54473523
Alignment:
Q  151 caatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    ||||||||||||||||||| |||||||||||| ||||   |||||||| ||||||||||| ||||||||||| |||||||||||    
T  54473603 caatacaccatttgacacccacacaaaaatctaacac---gtagtcacgtggaccccgcacaagcacactttatcttttctctc 54473523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 6034073 - 6034154
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||||||||| |||||||||||||||| |||||   ||| |||| |||||| |||||||||||||||||||||||    
T  6034073 gcaatacaccctttgacacccacacaaaaatctgacatgtagt---cacgtggatcccgcacaagcacactttctcttttctctc 6034154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 151 - 234
Target Start/End: Original strand, 31910222 - 31910302
Alignment:
Q  151 caatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    ||||||||  ||||||||| ||||||||||||||||| |||    ||||||||||||||| |||||||||||||||||||||||    
T  31910222 caatacactctttgacacccacacaaaaatctgacacatagc---cacatggaccccgcacaagcacactttctcttttctctc 31910302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 42044423 - 42044357
Alignment:
Q  165 acacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    ||||| ||||||||||||||||||||||   ||| ||||||||||| |||||||||||||||||||||||    
T  42044423 acacccacacaaaaatctgacacgtagt---cacgtggaccccgcacaagcacactttctcttttctctc 42044357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 24995178 - 24995097
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||||||||| ||| |||||| |||||||||||   ||| ||||||||||| ||||||| |||||||||||||||    
T  24995178 gcaatacaccctttgacacccacataaaaatttgacacgtagt---cacgtggaccccgcacaagcacattttctcttttctctc 24995097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 29239915 - 29239996
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||||||||||| | |||||||||||| ||||   |||||||| |||||||| || ||||||||||||||||| |||||    
T  29239915 gcaatacaccatttgacatccacacaaaaatctaacac---gtagtcacgtggaccccacacaagcacactttctctttcctctc 29239996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 151 - 234
Target Start/End: Original strand, 23608265 - 23608345
Alignment:
Q  151 caatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    ||||||||||||||||||| |||||||||||||||||   |||||||| || || || || |||||||||||||||||| ||||    
T  23608265 caatacaccatttgacacccacacaaaaatctgacac---gtagtcacgtgaactccacacaagcacactttctcttttatctc 23608345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 3481683 - 3481758
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttt 228  Q
    |||||||||  ||||||||| |||||||||||||||||    ||||||| |||||||| || |||||||||||||||||    
T  3481683 gcaatacactctttgacacccacacaaaaatctgacac---atagtcacgtggaccccacacaagcacactttctcttt 3481758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 29977914 - 29977989
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttt 228  Q
    ||||||||||  || ||||| |||||||||||||||||   ||||||| ||||||||| || |||||||||||||||||    
T  29977914 gcaatacaccccttaacacccacacaaaaatctgacac---gtagtcatatggaccccacacaagcacactttctcttt 29977989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 53352622 - 53352556
Alignment:
Q  165 acacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    ||||||||||||||||||||||||||||    |  ||||||||||| ||||| |||||||||||||||||    
T  53352622 acacctacacaaaaatctgacacgtagtt---aagtggaccccgcacaagcatactttctcttttctctc 53352556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 234
Target Start/End: Original strand, 40574810 - 40574889
Alignment:
Q  152 aatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||| ||||||||| |||||||||||||||||   |  |  ||||||| |||| | |||||||||||||||||||||||    
T  40574810 aatacaccctttgacacccacacaaaaatctgacac---gctgctacatggatcccgaacaagcacactttctcttttctctc 40574889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 55475220 - 55475295
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttt 228  Q
    |||||||||| ||||||||| ||||||||||||||||    || | || |||||||| ||||||| |||||||||||||    
T  55475220 gcaatacaccctttgacacccacacaaaaatctgaca---tgtggccatatggaccctgcataagtacactttctcttt 55475295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 189
Target Start/End: Complemental strand, 50526242 - 50526203
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgt 189  Q
    |||||||||| ||||||||| |||||||||||||||||||    
T  50526242 gcaatacaccctttgacacccacacaaaaatctgacacgt 50526203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 33644229 - 33644310
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||||||||| ||||||||||||||||||||||   ||| ||||||||||| |||||||||||||||||||||||    
T  33644229 gcaatacaccctttgacacccacacaaaaatctgacacgtagt---cacgtggaccccgcacaagcacactttctcttttctctc 33644310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 53982040 - 53982121
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||||||||| ||||||||||||||||||||||   ||| ||||||||||| |||||||||||||||||||||||    
T  53982040 gcaatacaccctttgacacccacacaaaaatctgacacgtagt---cacgtggaccccgcacaagcacactttctcttttctctc 53982121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 31456718 - 31456799
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||||||||| |||||||||||||||||   |||||||  ||||||||||| |||||||||||||||||||||||    
T  31456718 gcaatacaccctttgacacccacacaaaaatctgacac---gtagtcatgtggaccccgcacaagcacactttctcttttctctc 31456799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 52629329 - 52629410
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||||||||| |||||||||||||||||   |||||||| ||||||||| | |||||||||||||||||||||||    
T  52629329 gcaatacaccctttgacacccacacaaaaatctgacac---gtagtcacgtggaccccgtacaagcacactttctcttttctctc 52629410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 150 - 237
Target Start/End: Complemental strand, 48587162 - 48587078
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctcttc 237  Q
    |||||||||| ||||||||||||| ||||||||||||||   ||||||| |||| |||||| ||| ||||||||||||||||||||||    
T  48587162 gcaatacaccctttgacacctacataaaaatctgacacg---tagtcacgtggatcccgcacaagtacactttctcttttctctcttc 48587078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 17470434 - 17470515
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||| ||||| ||||||||||||||||||||||   ||| |||||||| || |||||||||||||||||||||||    
T  17470434 gcaatacaccttttaacacccacacaaaaatctgacacgtagt---cacgtggaccccacacaagcacactttctcttttctctc 17470515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 26141603 - 26141522
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||| ||||| ||||||||||||||||||| ||   |||||||||||| || |||||||||||||||||||||||    
T  26141603 gcaatacaccctttaacacccacacaaaaatctgacacgtggt---cacatggaccccacacaagcacactttctcttttctctc 26141522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 49607443 - 49607524
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||||||||| |||||||||||||||||   |||||||| |||| ||| || |||||||||||||||||||||||    
T  49607443 gcaatacaccctttgacacccacacaaaaatctgacac---gtagtcacgtggatcccacacaagcacactttctcttttctctc 49607524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 54868966 - 54868885
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||||||||| ||||||||||||||||||   |||| || ||||||||||| || ||||||||||||||||||||    
T  54868966 gcaatacaccttttgacacccacacaaaaatctgacacg---tagttacgtggaccccgcacaatcacactttctcttttctctc 54868885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 150 - 233
Target Start/End: Complemental strand, 11095424 - 11095346
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctct 233  Q
    |||||||||| ||||||||| ||||||||||||||||||||||     || | ||||||||||| |||||||||||||||||||    
T  11095424 gcaatacaccctttgacacccacacaaaaatctgacacgtagt-----cacgtaccccgcataaacacactttctcttttctct 11095346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 152 - 233
Target Start/End: Complemental strand, 27714960 - 27714882
Alignment:
Q  152 aatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctct 233  Q
    |||||||| ||||||||| ||||||||||||||||||   ||||||  ||||||||||| |||||||||||||||| |||||    
T  27714960 aatacaccctttgacacccacacaaaaatctgacacg---tagtcatgtggaccccgcacaagcacactttctcttctctct 27714882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 234
Target Start/End: Original strand, 8076426 - 8076503
Alignment:
Q  154 tacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||| ||||||||| |||||||||||| |||||||||   ||| ||||||||||| ||||||||||||||||| |||||    
T  8076426 tacaccctttgacacccacacaaaaatctaacacgtagt---cacgtggaccccgcacaagcacactttctctttcctctc 8076503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 41189835 - 41189754
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||| ||||||||||| ||| |||||| |||||||| |    ||||||||||||||| |||||||||||||||||||||||    
T  41189835 gcaatacatcatttgacacccacataaaaatttgacacgtggc---cacatggaccccgcacaagcacactttctcttttctctc 41189754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 151 - 234
Target Start/End: Complemental strand, 11347992 - 11347912
Alignment:
Q  151 caatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    ||||||| | ||||||| | ||||||||||||||||||| |    ||||||||||| |||||||||||||||||||||||||||    
T  11347992 caatacatcctttgacatccacacaaaaatctgacacgtggc---cacatggaccctgcataagcacactttctcttttctctc 11347912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 234
Target Start/End: Complemental strand, 51419430 - 51419350
Alignment:
Q  151 caatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    ||||||| | ||| ||||| ||||||||||||||||||| |    ||||| ||||||||| |||||||||||||||||||||||    
T  51419430 caatacatcctttaacacccacacaaaaatctgacacgtggc---cacatagaccccgcacaagcacactttctcttttctctc 51419350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 234
Target Start/End: Complemental strand, 20764984 - 20764905
Alignment:
Q  152 aatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||  ||| ||||| ||||||||||||||||||| |    ||||||||||||| | |||||||||||||||||||||||    
T  20764984 aatacactctttaacacccacacaaaaatctgacacgtggc---cacatggaccccgtacaagcacactttctcttttctctc 20764905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 26754724 - 26754805
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| || |||| | |||||||||||||||| || ||   ||||||||||||||| ||||||| ||||||||| |||||    
T  26754724 gcaatacacccttggacatccacacaaaaatctgacatgtggt---cacatggaccccgcacaagcacattttctctttcctctc 26754805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 234
Target Start/End: Complemental strand, 33118921 - 33118841
Alignment:
Q  151 caatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    ||||||||| ||||||||| |||||||||| |||||||   ||||||| |||| ||| || || |||||||||||||| |||||    
T  33118921 caatacaccctttgacacccacacaaaaatttgacacg---tagtcacgtggatccctcagaaacacactttctctttcctctc 33118841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 47531894 - 47531975
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||| ||| | |||||| |||||||||||| |    || ||| |||||||| |||||||||||||||||||||||    
T  47531894 gcaatacaccttttaacatccacacaagaatctgacacgtggc---catatgaaccccgcacaagcacactttctcttttctctc 47531975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 234
Target Start/End: Original strand, 11907421 - 11907481
Alignment:
Q  171 acacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||||||||| || ||   || |||||||||||| ||||||| |||||||||||||||    
T  11907421 acacaaaaatctgacatgtggt---catatggaccccgcacaagcacattttctcttttctctc 11907481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 192
Target Start/End: Complemental strand, 36707494 - 36707453
Alignment:
Q  151 caatacaccatttgacacctacacaaaaatctgacacgtagt 192  Q
    ||||||||| ||||||| | ||||||||||||||||||||||    
T  36707494 caatacaccctttgacatccacacaaaaatctgacacgtagt 36707453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 234
Target Start/End: Complemental strand, 48375736 - 48375696
Alignment:
Q  194 gtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    ||||||||||||||||| ||||||| ||||||||| |||||    
T  48375736 gtcacatggaccccgcacaagcacattttctctttcctctc 48375696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 20700844 - 20700925
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| |||||| |||||||||||||||||||||||||   ||| ||||||||||||||||||||||||||||| |||||    
T  20700844 gcaatacaccctttgactcctacacaaaaatctgacacgtagt---cacgtggaccccgcataagcacactttctctttcctctc 20700925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 151 - 234
Target Start/End: Complemental strand, 10249452 - 10249372
Alignment:
Q  151 caatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    ||||||||| ||||||||| ||||||||||||||||||||||   ||| ||||||||||| |||||||||||||||||||||||    
T  10249452 caatacaccttttgacacccacacaaaaatctgacacgtagt---cacgtggaccccgcacaagcacactttctcttttctctc 10249372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 9058509 - 9058590
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||||||||| |||||||||||||||||   |||||||  ||||||||||| |||||||||||||||||||||||    
T  9058509 gcaatacaccctttgacacccacacaaaaatctgacac---gtagtcatgtggaccccgcacaagcacactttctcttttctctc 9058590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 17473049 - 17473130
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||||||||| |||||||||||||||||   |||||||| |||| |||||| |||||||||||||||||||||||    
T  17473049 gcaatacaccctttgacacccacacaaaaatctgacac---gtagtcacgtggatcccgcacaagcacactttctcttttctctc 17473130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 28381726 - 28381645
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| || |||||| ||||||||||||||||||||||   ||||||||| ||||| |||||||||||||||||||||||    
T  28381726 gcaatacacctttcgacacccacacaaaaatctgacacgtagt---cacatggactccgcacaagcacactttctcttttctctc 28381645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 28863484 - 28863565
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||||||||| |||||||||||||||||   |||||||| ||||||||||| |||||||||||||||||| ||||    
T  28863484 gcaatacaccctttgacacccacacaaaaatctgacac---gtagtcacgtggaccccgcacaagcacactttctcttttatctc 28863565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 40613973 - 40613892
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||||||||| ||||||||||||||||||| |    ||||||||||||||| |||||||||||||||||||||||    
T  40613973 gcaatacaccctttgacacccacacaaaaatctgacacgtggc---cacatggaccccgcacaagcacactttctcttttctctc 40613892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 150 - 237
Target Start/End: Complemental strand, 7465806 - 7465722
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctcttc 237  Q
    |||||||||| ||||||||| ||||||||||||||||||   ||||||| |||||||| || |||||||||||||||||| |||||||    
T  7465806 gcaatacaccctttgacacccacacaaaaatctgacacg---tagtcacgtggaccccacacaagcacactttctcttttatctcttc 7465722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 151 - 234
Target Start/End: Original strand, 13438373 - 13438453
Alignment:
Q  151 caatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    ||||||| | ||||||||| ||||||||||||||||||||||   ||| ||||||||||| |||||||||||||||||||||||    
T  13438373 caatacatcctttgacacccacacaaaaatctgacacgtagt---cacgtggaccccgcacaagcacactttctcttttctctc 13438453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 151 - 234
Target Start/End: Complemental strand, 32505718 - 32505638
Alignment:
Q  151 caatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    ||||||||| ||||||||| ||||||||||||||||||   ||||||| ||||||||||| ||||||||||||| |||||||||    
T  32505718 caatacaccttttgacacccacacaaaaatctgacacg---tagtcacgtggaccccgcacaagcacactttctattttctctc 32505638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 33436171 - 33436090
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||||||||| |||||||||||| |||||||||   ||| ||||||||||| ||||||||||||||||| |||||    
T  33436171 gcaatacaccctttgacacccacacaaaaatctaacacgtagt---cacgtggaccccgcacaagcacactttctctttcctctc 33436090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 38273213 - 38273132
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||| ||||| |||||||||||||||||||||    |||||||||||||||  ||||||||||||||||||||||    
T  38273213 gcaatacaccctttaacacccacacaaaaatctgacacgtagc---cacatggaccccgcactagcacactttctcttttctctc 38273132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 40701507 - 40701588
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||||||||| |||||||||||||||||   ||||| || ||||||||||| || ||||||||||||||||||||    
T  40701507 gcaatacaccttttgacacccacacaaaaatctgacac---gtagttacgtggaccccgcacaatcacactttctcttttctctc 40701588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 42257222 - 42257303
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||| ||||||||||| ||| ||||||||||||||| |    ||||||||||||||| |||||||||||||||||||||||    
T  42257222 gcaatacatcatttgacacccacataaaaatctgacacgtggc---cacatggaccccgcacaagcacactttctcttttctctc 42257303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 150 - 233
Target Start/End: Complemental strand, 5574559 - 5574479
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctct 233  Q
    |||||||||| ||||||||| ||| ||||||||||||||||||   ||| |||| |||||| ||||||||||||||||||||||    
T  5574559 gcaatacaccctttgacacccacataaaaatctgacacgtagt---cacgtggatcccgcacaagcacactttctcttttctct 5574479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 19930891 - 19930810
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||||||| | ||||||||||||||||||   ||||||  ||||||||||| || ||||||||||||||||||||    
T  19930891 gcaatacaccctttgacatccacacaaaaatctgacacg---tagtcatgtggaccccgcacaaacacactttctcttttctctc 19930810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 30915492 - 30915573
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| |||||| || ||| ||||||||||||||||||   ||| ||||||||| | |||||||||||||||||||||||    
T  30915492 gcaatacaccctttgacccccacataaaaatctgacacgtagt---cacgtggaccccgtacaagcacactttctcttttctctc 30915573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 151 - 234
Target Start/End: Original strand, 4060715 - 4060795
Alignment:
Q  151 caatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    ||||||||| ||||||| | |||||||||||||||||   ||||| || |||| |||||||||||||||||||| |||||||||    
T  4060715 caatacaccttttgacatccacacaaaaatctgacac---gtagttacgtggatcccgcataagcacactttcttttttctctc 4060795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 27864733 - 27864808
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttt 228  Q
    |||||||||| ||||||| | |||||||||||||||||   ||| |||| ||||||||||| |||||||||||||||||    
T  27864733 gcaatacaccctttgacatccacacaaaaatctgacac---gtaatcacgtggaccccgcaaaagcacactttctcttt 27864808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 2533153 - 2533233
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||| | ||||||||| |||||||||||||||||||||    ||||| ||||||||| ||||||||||| |||||| ||||    
T  2533153 gcaatacatcctttgacacc-acacaaaaatctgacacgtagc---cacatagaccccgcacaagcacactttttcttttatctc 2533233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 234
Target Start/End: Original strand, 36168908 - 36168946
Alignment:
Q  196 cacatggaccccgcataagcacactttctcttttctctc 234  Q
    ||||||||||||||| ||||| |||||||||||||||||    
T  36168908 cacatggaccccgcacaagcatactttctcttttctctc 36168946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 38732395 - 38732458
Alignment:
Q  162 ttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttt 228  Q
    |||||||| |||||||||||||||| || ||   || |||||||||||| ||| |||||||||||||    
T  38732395 ttgacacccacacaaaaatctgacatgtggt---catatggaccccgcacaagtacactttctcttt 38732458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 2740303 - 2740384
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||||||||| |||||||||||||||||   |||||||| |||| |||||| |||||||||||||||||||||||    
T  2740303 gcaatacaccctttgacacccacacaaaaatctgacac---gtagtcacgtggatcccgcacaagcacactttctcttttctctc 2740384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 13811681 - 13811762
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||| ||||||||||| |||||||||||||||||   |||||||| ||||||||||| |||||||||||||||| ||||||    
T  13811681 gcaatacatcatttgacacccacacaaaaatctgacac---gtagtcacgtggaccccgcacaagcacactttctcttctctctc 13811762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 18520955 - 18520874
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||||||||| ||||||||||||||||||   ||||||| ||||||||||| |||||||||||||||||| ||||    
T  18520955 gcaatacaccctttgacacccacacaaaaatctgacacg---tagtcacgtggaccccgcacaagcacactttctcttttatctc 18520874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 28177804 - 28177885
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||||||||| ||||||||||||||||||| ||   ||||||||||||||| || ||||||||||||||||||||    
T  28177804 gcaatacaccctttgacacccacacaaaaatctgacacgtggt---cacatggaccccgcacaaacacactttctcttttctctc 28177885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 36733013 - 36732932
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||||||||| ||||||||||||||||| ||||   ||| ||||||||||| |||||||||||||||||||||||    
T  36733013 gcaatacaccctttgacacccacacaaaaatctgacacatagt---cacgtggaccccgcacaagcacactttctcttttctctc 36732932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 6679727 - 6679808
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||||||||| |||||||||||||||||   || ||||||||||||||||| || |||| |||||||||||||||    
T  6679727 gcaatacaccttttgacacccacacaaaaatctgacac---gtggtcacatggaccccgcacaaacacattttctcttttctctc 6679808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 40145436 - 40145517
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||| ||| | ||||||||||||||||||||||   ||| ||||||||||| |||||||||||||||||||||||    
T  40145436 gcaatacaccctttaacatccacacaaaaatctgacacgtagt---cacgtggaccccgcacaagcacactttctcttttctctc 40145517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 152 - 234
Target Start/End: Complemental strand, 33149707 - 33149628
Alignment:
Q  152 aatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||| ||||||||| |||||||||| |||||||||||   ||| |||| |||||| |||||||||||||||||||||||    
T  33149707 aatacaccctttgacacccacacaaaaatttgacacgtagt---cacgtggatcccgcacaagcacactttctcttttctctc 33149628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 234
Target Start/End: Complemental strand, 15409670 - 15409600
Alignment:
Q  161 tttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    ||||||||| |||||||||||||||||||||    ||||||||||||||| ||||||||| |||||||||||||    
T  15409670 tttgacacccacacaaaaatctgacacgtagc---cacatggaccccgcacaagcacactctctcttttctctc 15409600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 150 - 231
Target Start/End: Complemental strand, 42414373 - 42414295
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttct 231  Q
    |||||||||| ||||||||| ||||||||||||||||||   ||||||  ||||||||||| ||||||||||| ||||||||    
T  42414373 gcaatacaccctttgacacccacacaaaaatctgacacg---tagtcatgtggaccccgcacaagcacactttatcttttct 42414295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 35785228 - 35785309
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||||||||| |||||||||||||||||   ||||| || |||| |||||| || ||||||||||||||||||||    
T  35785228 gcaatacaccttttgacacccacacaaaaatctgacac---gtagttacgtggatcccgcacaatcacactttctcttttctctc 35785309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 233
Target Start/End: Original strand, 26720545 - 26720625
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctct 233  Q
    |||||||||| ||| ||||||||| ||||||||||||||| |    |||||||| |||||| ||||||||||||||||||||||    
T  26720545 gcaatacaccctttaacacctacaaaaaaatctgacacgtggc---cacatggatcccgcacaagcacactttctcttttctct 26720625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 233
Target Start/End: Original strand, 26990294 - 26990374
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctct 233  Q
    |||||||||| ||| ||||||||| ||||||||||||||| |    |||||||| |||||| ||||||||||||||||||||||    
T  26990294 gcaatacaccctttaacacctacaaaaaaatctgacacgtggc---cacatggatcccgcacaagcacactttctcttttctct 26990374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 14831843 - 14831924
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||||||||| ||| |||||||||||||   |||||||| |||| |||||| ||||||||||||| |||| ||||    
T  14831843 gcaatacaccctttgacacccacataaaaatctgacac---gtagtcacgtggatcccgcacaagcacactttcttttttttctc 14831924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 35943963 - 35943882
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||| ||||||||||| ||||||||||||||||||   |||| || |||| ||| || ||||||||||||||||| |||||    
T  35943963 gcaatacatcatttgacacccacacaaaaatctgacacg---tagttacgtggatcccacacaagcacactttctctttcctctc 35943882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 236
Target Start/End: Original strand, 31132394 - 31132456
Alignment:
Q  171 acacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctctt 236  Q
    ||||||||||||||||   ||||||||| ||||||||||| ||||| ||||| |||||||||||||    
T  31132394 acacaaaaatctgaca---agtagtcacgtggaccccgcacaagcatactttttcttttctctctt 31132456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 233
Target Start/End: Original strand, 31009032 - 31009097
Alignment:
Q  165 acacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctct 233  Q
    ||||| |||||||||||||||||   |||||||| |||| |||||| ||||||||||||| ||| ||||    
T  31009032 acacccacacaaaaatctgacac---gtagtcacgtggatcccgcacaagcacactttctatttcctct 31009097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 150 - 233
Target Start/End: Original strand, 4058 - 4138
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctct 233  Q
    |||||||||| ||| ||||| |||||||||||||||||   ||||| || |||| |||||||||||||||||||||||||||||    
T  4058 gcaatacaccttttaacacccacacaaaaatctgacac---gtagttacgtggatcccgcataagcacactttctcttttctct 4138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 10180 - 10099
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||| | ||||||| | ||| ||||||||||||||||||   ||| |||||| || | |||||||||||||||||||||||    
T  10180 gcaatacatcctttgacatccacataaaaatctgacacgtagt---cacgtggaccgcgtacaagcacactttctcttttctctc 10099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1268 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 1000 - 919
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||| ||| | ||||||||| ||||||||||||   ||| || | |||||| ||||||||||||||||| |||||    
T  1000 gcaatacaccctttaacatccacacaaaaaactgacacgtagt---cacgtgaatcccgcacaagcacactttctctttcctctc 919  T

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Target: scaffold1267 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 1000 - 919
Alignment:
Q  150 gcaatacaccatttgacacctacacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctctc 234  Q
    |||||||||| ||| ||| | ||||||||| ||||||||||||   ||| || | |||||| ||||||||||||||||| |||||    
T  1000 gcaatacaccctttaacatccacacaaaaaactgacacgtagt---cacgtgaatcccgcacaagcacactttctctttcctctc 919  T

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Target: scaffold0316 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 17104 - 17163
Alignment:
Q  171 acacaaaaatctgacacgtagtagtcacatggaccccgcataagcacactttctcttttctct 233  Q
    |||||||||||||||| || ||   ||||||||||||||| ||||||| ||||||||| ||||    
T  17104 acacaaaaatctgacatgtggt---cacatggaccccgcacaagcacattttctctttcctct 17163  T

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