View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14643_high_5 (Length: 322)

Name: NF14643_high_5
Description: NF14643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14643_high_5
NF14643_high_5
[»] chr6 (6 HSPs)
chr6 (1-296)||(11378711-11379010)
chr6 (153-208)||(16260662-16260717)
chr6 (153-211)||(8051014-8051072)
chr6 (153-211)||(26296245-26296303)
chr6 (168-209)||(862883-862924)
chr6 (153-205)||(31159123-31159175)
[»] chr5 (1 HSPs)
chr5 (153-211)||(32522574-32522632)
[»] chr1 (5 HSPs)
chr1 (150-208)||(49166651-49166709)
chr1 (153-208)||(8900833-8900888)
chr1 (153-208)||(32804291-32804346)
chr1 (153-207)||(5347008-5347062)
chr1 (177-209)||(39969805-39969837)
[»] chr8 (1 HSPs)
chr8 (153-209)||(24185570-24185626)
[»] chr7 (2 HSPs)
chr7 (153-208)||(2399739-2399794)
chr7 (153-209)||(21955381-21955436)
[»] chr2 (3 HSPs)
chr2 (153-212)||(12801085-12801144)
chr2 (153-209)||(11565039-11565095)
chr2 (153-205)||(33956332-33956384)
[»] chr4 (1 HSPs)
chr4 (150-208)||(52840307-52840364)


Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 11379010 - 11378711
Alignment:
Q  1 ttttaaataacatgtatcataccagtattgtattaagtttagtgttagattattagtcatcagtgaaaactctg---ggttcttcatttttgttgttaat 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||| ||||    
T  11379010 ttttaaataacatgtatcataccagtattgtattaagtttagtgttagattattagtcatcagtgaaaactctgataggttcttcatttttgttgctaat 11378911  T
Q  98 taaagtgattatattcattgttgaaactaaaatctgatgatggg-tacatctcttaaataattaatgtactcagtcacatttataaattagatacatgaa 196  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11378910 taaagtgattatattcattgttgaaactcaaatctgatgatggggtacatctcttaaataattaatgtactcagtcacatttataaattagatacatgaa 11378811  T
Q  197 ttattcaatgtattttacattgaataattaatctaccctctcacatttacaaattagatacatttataagttagatacatgaccaaagggagtatgtttt 296  Q
    ||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  11378810 ttattcaatgtatcttacattgaataattaatgtaccctgtcacatttacaaattagatacatttataagttagataaatgaccaaagggagtatgtttt 11378711  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 16260717 - 16260662
Alignment:
Q  153 aataattaatgtactcagtcacatttataaattagatacatgaattattcaatgta 208  Q
    ||||||||||||| |||||||||||||||  ||||| |||| ||||||||||||||    
T  16260717 aataattaatgtattcagtcacatttataggttagagacattaattattcaatgta 16260662  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 8051072 - 8051014
Alignment:
Q  153 aataattaatgtactcagtcacatttataaattagatacatgaattattcaatgtattt 211  Q
    ||||||||||||| | | ||||||||||| |||| |||||| ||||||||||| |||||    
T  8051072 aataattaatgtatttaatcacatttatagattatatacattaattattcaatatattt 8051014  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 26296303 - 26296245
Alignment:
Q  153 aataattaatgtactcagtcacatttataaattagatacatgaattattcaatgtattt 211  Q
    ||||||||| |||  |||||||||||||| |||| |||||| ||||||| |||||||||    
T  26296303 aataattaacgtatacagtcacatttatagattaaatacattaattatttaatgtattt 26296245  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 209
Target Start/End: Original strand, 862883 - 862924
Alignment:
Q  168 cagtcacatttataaattagatacatgaattattcaatgtat 209  Q
    ||||||||||||||  |||||||||| |||||||||||||||    
T  862883 cagtcacatttataggttagatacattaattattcaatgtat 862924  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 31159123 - 31159175
Alignment:
Q  153 aataattaatgtactcagtcacatttataaattagatacatgaattattcaat 205  Q
    ||||||||||||| || ||||||||||||  |||||||||| | |||||||||    
T  31159123 aataattaatgtattcggtcacatttatatgttagatacattagttattcaat 31159175  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 211
Target Start/End: Original strand, 32522574 - 32522632
Alignment:
Q  153 aataattaatgtactcagtcacatttataaattagatacatgaattattcaatgtattt 211  Q
    |||||||||||||  |||||||||||||| || |||||||| |||||||||||||||||    
T  32522574 aataattaatgtatgcagtcacatttatagatcagatacattaattattcaatgtattt 32522632  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 150 - 208
Target Start/End: Original strand, 49166651 - 49166709
Alignment:
Q  150 ttaaataattaatgtactcagtcacatttataaattagatacatgaattattcaatgta 208  Q
    ||||||||||||||||  ||||||||||||||  |||||||||| ||||||||||||||    
T  49166651 ttaaataattaatgtatccagtcacatttataggttagatacattaattattcaatgta 49166709  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 8900888 - 8900833
Alignment:
Q  153 aataattaatgtactcagtcacatttataaattagatacatgaattattcaatgta 208  Q
    |||||||||||||  | ||||||||||||  |||||||||| ||||||||||||||    
T  8900888 aataattaatgtatccggtcacatttataggttagatacattaattattcaatgta 8900833  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 32804291 - 32804346
Alignment:
Q  153 aataattaatgtactcagtcacatttataaattagatacatgaattattcaatgta 208  Q
    ||||||||||||| |||||||||||||||   ||||||||| ||| ||||||||||    
T  32804291 aataattaatgtattcagtcacatttatatgatagatacattaatgattcaatgta 32804346  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 207
Target Start/End: Original strand, 5347008 - 5347062
Alignment:
Q  153 aataattaatgtactcagtcacatttataaattagatacatgaattattcaatgt 207  Q
    |||||||||||||  || ||||||||||| |||||||| || |||||||||||||    
T  5347008 aataattaatgtatccattcacatttatatattagatatattaattattcaatgt 5347062  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 209
Target Start/End: Complemental strand, 39969837 - 39969805
Alignment:
Q  177 ttataaattagatacatgaattattcaatgtat 209  Q
    ||||||||||||||||| |||||||||||||||    
T  39969837 ttataaattagatacatcaattattcaatgtat 39969805  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 24185626 - 24185570
Alignment:
Q  153 aataattaatgtactcagtcacatttataaattagatacatgaattattcaatgtat 209  Q
    |||||||||||||  ||||||||||||||  ||||||| || |||||||||||||||    
T  24185626 aataattaatgtatccagtcacatttataggttagatatattaattattcaatgtat 24185570  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 2399794 - 2399739
Alignment:
Q  153 aataattaatgtactcagtcacatttataaattagatacatgaattattcaatgta 208  Q
    |||||||||||||  | ||||||||||||| |||||||||| || |||||||||||    
T  2399794 aataattaatgtatccggtcacatttataagttagatacattaactattcaatgta 2399739  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 21955381 - 21955436
Alignment:
Q  153 aataattaatgtactcagtcacatttataaattagatacatgaattattcaatgtat 209  Q
    |||||||||||||  ||||||||||||||  | |||||||| |||||||||||||||    
T  21955381 aataattaatgtatccagtcacatttatatgtcagatacat-aattattcaatgtat 21955436  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 12801144 - 12801085
Alignment:
Q  153 aataattaatgtactcagtcacatttataaattagatacatgaattattcaatgtatttt 212  Q
    |||||||||| || | ||||||||||||| |||| |||||| |||||||||||| |||||    
T  12801144 aataattaatatatttagtcacatttatagattaaatacattaattattcaatgaatttt 12801085  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 11565095 - 11565039
Alignment:
Q  153 aataattaatgtactcagtcacatttataaattagatacatgaattattcaatgtat 209  Q
    |||| ||||||||  |||||||||||||| || || ||||| |||||||||||||||    
T  11565095 aatatttaatgtatccagtcacatttatagatcaggtacattaattattcaatgtat 11565039  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 33956332 - 33956384
Alignment:
Q  153 aataattaatgtactcagtcacatttataaattagatacatgaattattcaat 205  Q
    |||||||||||||  | |||| |||||||| |||||||||| |||||||||||    
T  33956332 aataattaatgtatccggtcatatttataagttagatacattaattattcaat 33956384  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 52840364 - 52840307
Alignment:
Q  150 ttaaataattaatgtactcagtcacatttataaattagatacatgaattattcaatgta 208  Q
    |||||||||||||||| || ||||||||||||  |||||||||| ||||||| ||||||    
T  52840364 ttaaataattaatgta-tcggtcacatttatatgttagatacattaattatttaatgta 52840307  T

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