View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14643_high_6 (Length: 312)
Name: NF14643_high_6
Description: NF14643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14643_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 2 - 310
Target Start/End: Complemental strand, 43624315 - 43623999
Alignment:
| Q |
2 |
gggcttaaacgcaatgagtttatgacctataaattgtaggcaaannnnnnncttaagcgttcaacgaaacgcacatatcatgcatggagaaataatttca |
101 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
43624315 |
gggcttaagcgcagtgagtttatgacctataaattgtaggcaaaattttttcttaggcgttcaacgaaacgcatatatcatgcattgagaaataatttca |
43624216 |
T |
|
| Q |
102 |
atatagtctacaacatattaaatgtttatgaaacattatctgagttatacttatgaaatatatatat--------gggataaaatccacgatcatatata |
193 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
43624215 |
atatagtctacaacatattaaatgtttatgcaacatcatctgagttgtacttatgaaatatatatatatatatatgggataatatccacgatcatatata |
43624116 |
T |
|
| Q |
194 |
ttttttacaatttcttttaatccaaaaaacatatataatccacattccacacgtagctcattttaaccggatgcctgttccaagtcttgtgaggcttttt |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
43624115 |
ttttttacaatttcttttaatccaaaaaacatatataatccacattccacacgtagctcattttaactggatgcctgttccaagtcttgtgaggcttttt |
43624016 |
T |
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| Q |
294 |
gtgtttgctctctgctc |
310 |
Q |
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||||||||||||||||| |
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| T |
43624015 |
gtgtttgctctctgctc |
43623999 |
T |
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