View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14643_low_1 (Length: 468)
Name: NF14643_low_1
Description: NF14643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14643_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Original strand, 3809997 - 3810430
Alignment:
| Q |
1 |
aaagcaaaatttttattggtaagcttatgtttgtagctgcagtggccagacccaggtttgacaacgaaggaaaggagacattctcagggaagattggtat |
100 |
Q |
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| T |
3809997 |
aaagcaaaaattttattggtaagcttatgtttgtagctgcagtggccagacccaggtttgacaacgaaggaaaggagacattctcagggaagattggtat |
3810096 |
T |
|
| Q |
101 |
atttccatttgtgtatgaacagccagctagaagaagcagtgtcaacagagctgcagggactatagaaaggaaacctataacttctgtgacaagagaggtg |
200 |
Q |
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| T |
3810097 |
atttccatttgtgtatgaacagccagctagaagaagcagtgtcaacagagctgcagggactatagaaaggaaacctataacttctgtgacaagagaggtg |
3810196 |
T |
|
| Q |
201 |
aataaaactttcatgatgagcaaaatcttaccagcccttaagaattgctggccaatagaagatgtagggaagacaattttcattcaacaagacaatgcaa |
300 |
Q |
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| T |
3810197 |
aataaaactttcatgatgagcaaaatcttaccagcccttaagaattgctggccaatagaagatgtagggaagacaattttcattcaacaagagaatgcaa |
3810296 |
T |
|
| Q |
301 |
agtctcatatttctaaagatgatcctgatttttgtcgagcagcaagtgaagatgggtttgacattcgattgatttgtcaacctccgaattcacccgattt |
400 |
Q |
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| T |
3810297 |
agtctcatatttctaaagatgatcctgatttttgtcgagcagcaagtgaagatgggtttg-------------------acctccgaattcacccgattt |
3810377 |
T |
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| Q |
401 |
gaatgtcttggacttgggctttttcaatgccattcagtctttacagcagaaag |
453 |
Q |
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| T |
3810378 |
gaatgtcttggacttgggctttttcaatgccattcagtatttacagcagaaag |
3810430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 436
Target Start/End: Original strand, 1329564 - 1329651
Alignment:
| Q |
349 |
aagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttgggctttttcaatgccattca |
436 |
Q |
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| T |
1329564 |
aagatgggttcgacattcgactgatgtgtcaacctcccaattcccctgaactaaatgtcttagaccttggcttcttcagtgccattca |
1329651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 330 - 418
Target Start/End: Original strand, 45489216 - 45489304
Alignment:
| Q |
330 |
ttttgtcgagcagcaagtgaagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttggg |
418 |
Q |
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| T |
45489216 |
ttttgtagagcagcttctgaaggtgggtttgacattcgattgatatgtcaaccacctaactctcccgatttgaatgttttggatttggg |
45489304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 436
Target Start/End: Complemental strand, 42539990 - 42539903
Alignment:
| Q |
349 |
aagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttgggctttttcaatgccattca |
436 |
Q |
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| T |
42539990 |
aagatgggttcgacattcgactgatgtgtcaacctcccaattcccctgaactaaatgtcttagaccttggcttcttcagtgccattca |
42539903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 406
Target Start/End: Original strand, 8187133 - 8187209
Alignment:
| Q |
330 |
ttttgtcgagcagcaagtgaagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgt |
406 |
Q |
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| T |
8187133 |
ttttgtagagcagcttttgaaggtgggtttgacattcgattgatatgttaacgacctaattctcccgatttgaatgt |
8187209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 424
Target Start/End: Complemental strand, 40286990 - 40286926
Alignment:
| Q |
360 |
gacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttgggcttttt |
424 |
Q |
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| T |
40286990 |
gacattcgtttgacttttcaacctcctaattctcccgatttgaacgtattggatttaggcttttt |
40286926 |
T |
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