View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14643_low_3 (Length: 225)
Name: NF14643_low_3
Description: NF14643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14643_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 25168232 - 25168437
Alignment:
| Q |
1 |
cactcactagcttagattgctcttttgtaaactttggtaaccttgttctgactaatgctctcatggttttaggataatctccattggccaagggatccat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25168232 |
cactcactagcttagattgctcttttgtaaactttggtaaccttgttctgactaatgctctcatggtttttggataatctccattggccaagggatccat |
25168331 |
T |
|
| Q |
101 |
aaacctataattaaacaaagaaatcgaataagttatcatatatatctccttaattgtgttaatttggatggtataattatataagctttatctttttaat |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
25168332 |
aaacctataattaaacaaagaaattgaataagttatcatataaatctccttaattgtgttaatttggatggtataattatataagttttatctttgtaat |
25168431 |
T |
|
| Q |
201 |
gaactt |
206 |
Q |
| |
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|||||| |
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| T |
25168432 |
gaactt |
25168437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 25253034 - 25252829
Alignment:
| Q |
1 |
cactcactagcttagattgctcttttgtaaactttggtaaccttgttctgactaatgctctcatggttttaggataatctccattggccaagggatccat |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25253034 |
cactcactagcttagattgctcttttgtaaactttggtaaccttgatctgactaaggctctcatggttttaggataatctccattggccaagggatccat |
25252935 |
T |
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| Q |
101 |
aaacctataattaaacaaagaaatcgaataagttatcatatatatctccttaattgtgttaatttggatggtataattatataagctttatctttttaat |
200 |
Q |
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|
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
25252934 |
aaacctataattaaacaaagaaattgaataagttatcatataaatctccttaattgtgttaatttggatggtataattatataagttttatctttgtaat |
25252835 |
T |
|
| Q |
201 |
gaactt |
206 |
Q |
| |
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|||||| |
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| T |
25252834 |
gaactt |
25252829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 25179897 - 25180041
Alignment:
| Q |
1 |
cactcactagcttagattgctcttttgtaaactttggtaaccttgttctgactaatgctctcatggttttaggataatctccattggccaagggatccat |
100 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||||||| ||| || || |||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
25179897 |
cactgacttgcttagattgctcttttgtaaactttggtaaccttgatctaaccaaggctctcatggtttttggataatctccattgaccaagggatccat |
25179996 |
T |
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| Q |
101 |
aaacctataattaaacaaagaaatcgaataagttatcatatatat |
145 |
Q |
| |
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||||||||||||| | | |||||| |||||||||||||||||||| |
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| T |
25179997 |
aaacctataattatatatagaaatggaataagttatcatatatat |
25180041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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