View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14644_high_3 (Length: 468)
Name: NF14644_high_3
Description: NF14644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14644_high_3 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 18 - 468
Target Start/End: Complemental strand, 54473232 - 54472782
Alignment:
| Q |
18 |
ttgataactcttcataactgaatgagctctggttgaacccaagtgcaaccgttgggtgtggtggtggcaatacaggatctactgggccagagtaactgga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54473232 |
ttgataactcttcataactgaatgagctctggttgaacccaagtgcaaccgttgggtgtggtggtggcaatacaggatctactgggccagagtaactgga |
54473133 |
T |
|
| Q |
118 |
gttggtcaactcactgctactaacctggtgcggaggtgtcttttttgaaggtgtcatttttggaggtgtcttttttggaggtgttggagtccaaccacca |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
54473132 |
gttggtcaactcactgctactaacctggtgcggaggtgtcttttttgaaggtgtcatttttggaggtgttttttttggaggtgttggagtccaaccacca |
54473033 |
T |
|
| Q |
218 |
ccttgagctggtggaggaatattaagcacatgctcaccattgttgtacatatactgatttgcacctgcatgtttataatactagtcattttctgtacact |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54473032 |
ccttgagctggtggaggaatattaagcacatgctcaccattgttgtacatatactgatttgcacctgcatgtttataatactagtcattttctgtacact |
54472933 |
T |
|
| Q |
318 |
atatatcggtagagtagaagcaagaaattccataagcagagaacacatatttttggtaacaaagttataccaattgtgcagttcctttctatcatcgtca |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54472932 |
atatatcggtagagtagaagcaagaaattccataagcagagaacacatatgtttggtaacaaagttataccaattgtgcagttcctttctatcatcgtca |
54472833 |
T |
|
| Q |
418 |
tcttaaaagattaggatttaaattgtacaacttgtatttatatattacggt |
468 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54472832 |
tcttaaaagaataggatttaaattgtacaacttgtatttatatattacggt |
54472782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University