View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14644_high_4 (Length: 451)
Name: NF14644_high_4
Description: NF14644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14644_high_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Original strand, 52577264 - 52577712
Alignment:
| Q |
1 |
aaccaactatcagtcacagtctgtagagaataagttgtttacatacgaaaaataaaaccttgtaagataattgtttacatttaaatcatcttcaaacagt |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
52577264 |
aaccaactatccgtcacagtctgtagagaataagttgtttacataccaaaaataaaacctagtaagataattgtttacatttaaatcatcttcaaacagt |
52577363 |
T |
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| Q |
101 |
actccctnnnnnnnttaatttcaaatgagaaaaacaaaattatcagttggaactcttcgtttgtatttcaaaatctacctgtgaattccatatcatctgc |
200 |
Q |
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||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52577364 |
actccttaaaaaaattaatttcaaatgagaaaaacaaaattatcagttggaactcttcgtttgtatttcaaaatctacctgtgaattccatatcatctgc |
52577463 |
T |
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| Q |
201 |
cattcgccctcttctagttctggatcttcttccccagaattcttatttaaggaaatgagtttatctattgcctgtcggaattaaggatgcgaaaaatagt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
52577464 |
cattcgccctcttctagttctggatcttcttccccagaattcttatttaaggaaatgagtttatctattgcctgttggaattaaggatgtgaaaaatagt |
52577563 |
T |
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| Q |
301 |
gacattggaaatattccagttatgtttatagagnnnnnnnngagcacccttacctctccaacacccacccccgatgaaattgctgttaataacttttgtc |
400 |
Q |
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||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
52577564 |
gacattggaaatattccagttatgtttattga--aaaaaaagagcacccttacctctcgaacacccacccccgatgaaattgctgttaataacttttgtc |
52577661 |
T |
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| Q |
401 |
tgggttcagtttgcttctgcagcacaaatgtggttccctgcactatatata |
451 |
Q |
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| T |
52577662 |
tgggttcagtttgcttctgcagcacaaatgtggttccctgcactatatata |
52577712 |
T |
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