View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14644_high_9 (Length: 317)
Name: NF14644_high_9
Description: NF14644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14644_high_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 133; Significance: 4e-69; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 24 - 291
Target Start/End: Complemental strand, 31606548 - 31606278
Alignment:
| Q |
24 |
actcacagttgccagagacgattactggagtggtatttgtgctgtgagtg------gcagtcctagaaacagcacattcagtaacactttgtttcaacgt |
117 |
Q |
| |
|
||||||||| |||||||| |||| ||||||||||||||||||||||| || ||| ||||| |||||||||||| ||||||| ||||||||||| |
|
|
| T |
31606548 |
actcacagtcgccagagaagattgctggagtggtatttgtgctgtgaatgtgagtagcaatcctaagaacagcacattcgataacactatgtttcaacgt |
31606449 |
T |
|
| Q |
118 |
gatggtaatgcttcttctaaaataagtctgttatacaattgtgatacaacgagtataacgaatctttttagtactacctgcggtaataccaaagtttcct |
217 |
Q |
| |
|
|||||| ||| ||| | ||| |||||||||||||||||||||| |||| ||||||| ||| |||||||||||||||| |||||||| |||||||||| |
|
|
| T |
31606448 |
gatggtgatgtttcgtataatgtaagtctgttatacaattgtgaaacaa---gtataacaaatatttttagtactacctgtggtaatactaaagtttcct |
31606352 |
T |
|
| Q |
218 |
acacaattgtggattctgcttcgctctcactcacatgtactccgagtgttactgttgagtttccaattttggca |
291 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
31606351 |
acacaattgtggatcctgcttccgcctcactcacatgtactccgagtgttattgttgagtttccaattttggca |
31606278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 157
Target Start/End: Complemental strand, 31597347 - 31597220
Alignment:
| Q |
30 |
agttgccagagacgattactggagtggtatttgtgctgtgagtggcagtcctagaaacagcacattcagtaacactttgtttcaacgtgatggtaatgct |
129 |
Q |
| |
|
|||||| ||||| |||||||||||| ||| ||||| |||||| || || || ||||||||||||| |||||||| ||||||||| |||||||| || |
|
|
| T |
31597347 |
agttgcaagagatgattactggagtaatatatgtgccttgagtgacaatcataagaacagcacattcaacaacactttctttcaacgttatggtaatact |
31597248 |
T |
|
| Q |
130 |
tcttctaaaataagtctgttatacaatt |
157 |
Q |
| |
|
|| |||||| ||| | |||||||||||| |
|
|
| T |
31597247 |
tcgtctaaagtaactttgttatacaatt |
31597220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 31610385 - 31610334
Alignment:
| Q |
17 |
cacagatactcacagttgccagagacgattactggagtggtatttgtgctgt |
68 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31610385 |
cacagagactcagagttgccagagacgattactggagtggtatttgtgctgt |
31610334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 166
Target Start/End: Complemental strand, 31616463 - 31616325
Alignment:
| Q |
34 |
gccagagacgattactggagtggtatttgtgc------tgtgagtggcagtcctagaaacagcacattcagtaacactttgtttcaacgtgatggtaatg |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| | ||| | ||||| || || || |||| ||||||||||||||||| || |
|
|
| T |
31616463 |
gccagagacgattactggagtggtatttgtgctgtcaatgtgagtggaaatcccaagaacagaacttttgatagcactatgtttcaacgtgatggtgttg |
31616364 |
T |
|
| Q |
128 |
cttcttctaaaataagtctgttatacaattgtgatacaa |
166 |
Q |
| |
|
||||||| || ||| |||||||||||||||||||||| |
|
|
| T |
31616363 |
tttcttctcaagtaaacctgttatacaattgtgatacaa |
31616325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 31621226 - 31621170
Alignment:
| Q |
17 |
cacagatactcacagttgccagagacgattactggagtggtatttgtgctgtgagtg |
73 |
Q |
| |
|
|||||| ||||||||| || ||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
31621226 |
cacagaaactcacagtcgctagagacgattactggggtggtatttgtactgtgagtg |
31621170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 31636221 - 31636165
Alignment:
| Q |
17 |
cacagatactcacagttgccagagacgattactggagtggtatttgtgctgtgagtg |
73 |
Q |
| |
|
|||||| ||||||||| || ||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
31636221 |
cacagaaactcacagtcgctagagacgattactggggtggtatttgtactgtgagtg |
31636165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 123
Target Start/End: Complemental strand, 31610297 - 31610252
Alignment:
| Q |
78 |
tcctagaaacagcacattcagtaacactttgtttcaacgtgatggt |
123 |
Q |
| |
|
||||| ||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
31610297 |
tcctaaaaacagcacattcggtaacactctgtttcaacgtgatggt |
31610252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 167
Target Start/End: Complemental strand, 31621120 - 31621061
Alignment:
| Q |
108 |
gtttcaacgtgatggtaatgcttcttctaaaataagtctgttatacaattgtgatacaac |
167 |
Q |
| |
|
|||||||| | |||||| || ||||||| || ||| |||||||||||||||||||||||| |
|
|
| T |
31621120 |
gtttcaaccttatggtagtgtttcttctcaactaaatctgttatacaattgtgatacaac |
31621061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 167
Target Start/End: Complemental strand, 31636115 - 31636056
Alignment:
| Q |
108 |
gtttcaacgtgatggtaatgcttcttctaaaataagtctgttatacaattgtgatacaac |
167 |
Q |
| |
|
|||||||| | |||||| || ||||||| || ||| |||||||||||||||||||||||| |
|
|
| T |
31636115 |
gtttcaaccttatggtagtgtttcttctcaactaaatctgttatacaattgtgatacaac |
31636056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University