View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14644_low_1 (Length: 538)
Name: NF14644_low_1
Description: NF14644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14644_low_1 |
 | |
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| [»] chr5 (6 HSPs) |
| |
|
| [»] scaffold0406 (1 HSPs) |
| |
|
| [»] chr3 (9 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 452; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 19 - 538
Target Start/End: Complemental strand, 5664319 - 5663797
Alignment:
| Q |
19 |
agttcctaccaagattcttca-caagagtgacaaggagactcacaaggaaaattactagagcaactaatgagcaagaatgaccattattggaagtcttca |
117 |
Q |
| |
|
|||||||| |||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5664319 |
agttcctaacaagattcttcaacaaaagtgacaaggagactcgcaaggaaaattactagagcaactaatgagcaagaatgaccattattggaagtcttca |
5664220 |
T |
|
| Q |
118 |
acaagattgga--ggagaccgataacaaatattatgacaagagatgacacaaatttactatcacggtggaggtaacacttgataaattgatcaaccatga |
215 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
5664219 |
acaagattggaaaggagaccgataacaaatattatgacaagaagtgacacaaatttactatcacggtggaggtaacacttgtcaaattgatcaaccataa |
5664120 |
T |
|
| Q |
216 |
aaagcaatgcatgacaagatgatatcaaaaatctatgattgagcaactacatactacattaatttggagtttttgaaatatgcatcaaggatgatttttg |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
5664119 |
aaagcaatgcatgacaagatgatatcaaaaatctatgattgagcaactacatactacattaatttggagtttttgaaatgtgcatcaaggatgagttttg |
5664020 |
T |
|
| Q |
316 |
aaattgatacatatttttagaatattctagttaaaaaatgacaatgtctaatcagagaaactagagtagcttaaagttgctacatgttttagattgttct |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5664019 |
aaattgatacatatttttagaatattctagttaaaaaatgacaatgtctgatcagagaaactagagtagcttaaagttgctacatgttttagattgttct |
5663920 |
T |
|
| Q |
416 |
attaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacggaaaacaaaggcctagactcttctagttttagaaacatctt |
515 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5663919 |
attaatgtctaaattaaattgtagcctagaaacatctataataatctaatgtagaaacggaaaacaaaggcctagactcttctagttttagaaacatctt |
5663820 |
T |
|
| Q |
516 |
caagcacttataaatagaattat |
538 |
Q |
| |
|
||| ||||||||||||||||||| |
|
|
| T |
5663819 |
caatcacttataaatagaattat |
5663797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 373 - 538
Target Start/End: Original strand, 5046332 - 5046498
Alignment:
| Q |
373 |
aaactagagtagcttaaagttgctacatgttt-tagattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaa |
471 |
Q |
| |
|
|||||||| || | |||||||||| ||||||| ||||||||| |||||||||||| |||| ||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
5046332 |
aaactagaataacataaagttgcttcatgtttatagattgttttattaatgtctaggttaagttaaagcctagaaacatctataataatcttgtgtagat |
5046431 |
T |
|
| Q |
472 |
acggaaaacaaaggcctagactcttctagttttagaaacatcttcaagcacttataaatagaattat |
538 |
Q |
| |
|
| || ||||||||||||||| | |||||||||||||||||||| ||||||| |||||||||| |||| |
|
|
| T |
5046432 |
aaggcaaacaaaggcctagattattctagttttagaaacatctacaagcacctataaatagacttat |
5046498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 373 - 531
Target Start/End: Original strand, 5047103 - 5047262
Alignment:
| Q |
373 |
aaactagagtagcttaaagttgctacatgtttt-agattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaa |
471 |
Q |
| |
|
|||||||| || | |||||||||||||||||| ||||||||||||||||||||| |||| ||| ||||| ||| ||||||||||||||| | |||| |
|
|
| T |
5047103 |
aaactagaataacataaagttgctacatgtttcgagattgttctattaatgtctaggttaagttaaagccttgaaccatctataataatcttgtctagat |
5047202 |
T |
|
| Q |
472 |
acggaaaacaaaggcctagactcttctagttttagaaacatcttcaagcacttataaata |
531 |
Q |
| |
|
| || ||||||||||||||| | |||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
5047203 |
aaggcaaacaaaggcctagattattctagttttagaaacatctacaagcacctataaata |
5047262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 373 - 531
Target Start/End: Original strand, 5047874 - 5048033
Alignment:
| Q |
373 |
aaactagagtagcttaaagttgctacatgtttt-agattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaa |
471 |
Q |
| |
|
|||||||| || | |||||||||||||||||| ||||||||||||||||||||| |||| ||| ||||| ||| ||||||||||||||| |||||| |
|
|
| T |
5047874 |
aaactagaataacataaagttgctacatgtttcgagattgttctattaatgtctaggttaagttaaagccttgaaccatctataataatcttgtgtagat |
5047973 |
T |
|
| Q |
472 |
acggaaaacaaaggcctagactcttctagttttagaaacatcttcaagcacttataaata |
531 |
Q |
| |
|
| || ||||||||||||||| | ||||||||||| |||||||| ||||||| |||||||| |
|
|
| T |
5047974 |
aaggcaaacaaaggcctagattattctagttttaaaaacatctacaagcacctataaata |
5048033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 151 - 319
Target Start/End: Original strand, 5047666 - 5047833
Alignment:
| Q |
151 |
gacaagagatgacacaaatttactatcacggtggaggtaacacttgataaattgatcaaccatgaaaag---caatgcatgacaagatgatatcaaaaat |
247 |
Q |
| |
|
|||||||| || || | |||| |||||| |||||||||||||| || |||||||||||| ||||| || ||||||| || |||||||| || |||| |
|
|
| T |
5047666 |
gacaagaggtgccaaatattttctatcatggtggaggtaacacctgtcaaattgatcaactatgaagagtatcaatgcaggaggagatgatagcacaaat |
5047765 |
T |
|
| Q |
248 |
ctatgattgagcaactacatactacattaatttggagtttttgaaatatgcatcaaggatgatttttgaaat |
319 |
Q |
| |
|
||||| |||| ||||||| |||||| ||||| |||||| ||||||||||||||||| || | ||||||| |
|
|
| T |
5047766 |
ctatgtttgaacaactacgtactac----atttgaagttttcgaaatatgcatcaaggaggagtgttgaaat |
5047833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 168 - 319
Target Start/End: Original strand, 5046912 - 5047062
Alignment:
| Q |
168 |
atttactatcacggtggaggtaacacttgataaattgatcaaccatgaaaag---caatgcatgacaagatgatatcaaaaatctatgattgagcaacta |
264 |
Q |
| |
|
|||| |||||| |||||||||||||| || |||||||||||| ||||| || ||||||| | | |||||| || ||||||||| |||| |||||| |
|
|
| T |
5046912 |
attttctatcatggtggaggtaacacctgtcaaattgatcaactatgaagagtatcaatgcagaaggatatgatagcacaaatctatgtttgaacaacta |
5047011 |
T |
|
| Q |
265 |
catactacattaatttggagtttttgaaatatgcatcaaggatgatttttgaaat |
319 |
Q |
| |
|
| ||||||||| || |||||| ||||||||||||||||| || | ||||||| |
|
|
| T |
5047012 |
cgtactacatt----tgaagttttcgaaatatgcatcaaggaggagtgttgaaat |
5047062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 129; Significance: 2e-66; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 153 - 528
Target Start/End: Complemental strand, 1275629 - 1275259
Alignment:
| Q |
153 |
caagagatgacacaaatttactatcacggtggaggtaacacttgataaattgatcaaccatgaaaag---caatgcatgacaagatgatatcaaaaatct |
249 |
Q |
| |
|
|||||| | |||||||| |||||||| ||||||||||| ||||| ||||| |||||| ||||| || ||||| | || |||||||||||| |||||| |
|
|
| T |
1275629 |
caagaggtaacacaaatgtactatcatggtggaggtaagacttgtcaaattaatcaactatgaagagtatcaatgtaggaaaagatgatatcacaaatct |
1275530 |
T |
|
| Q |
250 |
atgattgagcaactacatactacattaatttggagtttttgaaatatgcatcaaggatgatttttgaaattgatacatatttttagaatattctagttaa |
349 |
Q |
| |
|
||| |||||||||||| | |||||| |||||||| |||||||||||||||||| || | ||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
1275529 |
atgtttgagcaactacgcattacatt----tggagtttctgaaatatgcatcaaggaggagtgttgaaattgatacatatttctagaattttctagttaa |
1275434 |
T |
|
| Q |
350 |
aaaatgacaatgtctaatcagagaaa-ctagagtagcttaaagttgctacatgttt-tagattgttctattaatgtctaaattaaattatagcctagaaa |
447 |
Q |
| |
|
| | || | ||||| | ||||||| ||||| || || ||||||||||||||||| |||||| || ||||||||| |||||||| ||||||| |||||| |
|
|
| T |
1275433 |
tata--acgacgtctatt-agagaaaactagaataactcaaagttgctacatgtttctagattattttattaatgtataaattaagttatagcttagaaa |
1275337 |
T |
|
| Q |
448 |
catctataataatctaatgtagaaacggaaaacaaaggcctagactcttctagttttagaaacatcttcaagcacttataa |
528 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||| ||||||| |||||||| |||||||||| ||||| |
|
|
| T |
1275336 |
catctataataatctaatgtagaaatggcaaacaaaggcctaga---atctagttctagaaacaccttcaagcacctataa |
1275259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 128; Significance: 6e-66; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 140 - 533
Target Start/End: Complemental strand, 22055904 - 22055518
Alignment:
| Q |
140 |
acaaatattatgacaagagatgacacaaatttactatcacggtggaggtaacacttgataaattgatcaaccatgaaaag---caatgcatgacaagatg |
236 |
Q |
| |
|
|||| ||||||| ||||| ||||||||||||||||||| ||| ||||||||||||| |||||||||||| |||||||| |||||||||| ||||| |
|
|
| T |
22055904 |
acaagtattatggcaagatgtgacacaaatttactatcatggtagaggtaacacttgtaaaattgatcaactatgaaaagtatcaatgcatgaggagatg |
22055805 |
T |
|
| Q |
237 |
atatcaaaaatctatgattgagcaactacatactacattaatttggagtttttgaaatatgcatcaaggatgatttttgaaattgatacatatttttaga |
336 |
Q |
| |
|
|||||| || |||||| |||| ||||| ||| ||||||||| |||| || ||| ||||| || | ||||||||||||||||| | || | |
|
|
| T |
22055804 |
atatca--------tgtttgagctactatgtactagatt----tggagttttcgaaacatacattaaggaggagtgttgaaattgatacatatctctaaa |
22055717 |
T |
|
| Q |
337 |
atattctagttaaaaa-atgacaatgtctaatcagagaaa-ctagagtagcttaaagttgctacatgttt-tagattgttctattaatgtctaaattaaa |
433 |
Q |
| |
|
||| | |||||||||| ||||||||||||| | ||||||| ||| | ||||||||| |||||| |||||| |||||||||| ||||||||||| |||||| |
|
|
| T |
22055716 |
ataatatagttaaaaatatgacaatgtctatt-agagaaaactataatagcttaaatttgctaaatgtttctagattgttcaattaatgtctagattaaa |
22055618 |
T |
|
| Q |
434 |
ttatagcctagaaacatctataataatctaatgtagaaacggaaaacaaaggcctagactcttctagttttagaaacatcttcaagcacttataaataga |
533 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| ||| || |||||||| |||||| | || ||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
22055617 |
ttgtagcctagaaacatctataataatctaatgtataaaaggcaaacaaagacctagattattttagttctagaatcatcttcaagcacttataaataga |
22055518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 311 - 529
Target Start/End: Complemental strand, 22056817 - 22056597
Alignment:
| Q |
311 |
ttttgaaattgatacatatttttagaatattctagttaaaaaatgacaatgtctaatcagagaaa-ctagagtagctt-aaagttgctacatgttt-tag |
407 |
Q |
| |
|
||||||||||||||||||||| | | || ||||||||||| ||| || |||||| | ||||||| ||| | |||||| |||||| || ||| ||| ||| |
|
|
| T |
22056817 |
ttttgaaattgatacatatttccaaagtaatctagttaaaatatgccagtgtctatt-agagaaaactataatagctttaaagttacttcatatttctag |
22056719 |
T |
|
| Q |
408 |
attgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacggaaaacaaaggcctagactcttctagttttaga |
507 |
Q |
| |
|
|||||||| |||||||||| ||||| || ||||||| |||||||||| ||||||||||||||||| || ||||||| ||||||| | |||||||| |||| |
|
|
| T |
22056718 |
attgttctgttaatgtctagattaatttgtagcctaaaaacatctatgataatctaatgtagaaaaggcaaacaaatgcctagattattctagttctaga |
22056619 |
T |
|
| Q |
508 |
aacatcttcaagcacttataaa |
529 |
Q |
| |
|
|| |||||||||||| |||||| |
|
|
| T |
22056618 |
aatatcttcaagcacctataaa |
22056597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 274 - 443
Target Start/End: Original strand, 29372954 - 29373123
Alignment:
| Q |
274 |
ttaatttggagtttttgaaatatgcatcaaggatgatttttgaaattgatacatatttttagaatattctagttaaaaa-atgacaatgtctaatcagag |
372 |
Q |
| |
|
||||||||||||||| || |||||||| ||||| || ||||| |||||||| ||| ||||||| | |||||||||| ||||||||||||| | |||| |
|
|
| T |
29372954 |
ttaatttggagttttcgacatatgcattaaggaggagagttgaa--tgatacatgtttctagaataatttagttaaaaatatgacaatgtctatt-agag |
29373050 |
T |
|
| Q |
373 |
aaac-tagagtagcttaaagttgctacatgttt-tagattgttctattaatgtctaaattaaattatagccta |
443 |
Q |
| |
|
|| |||| ||| ||||||||||||||||||| |||||||||||| |||| |||| ||||| || ||||||| |
|
|
| T |
29373051 |
aattatagaatagtttaaagttgctacatgtttctagattgttctactaatatctagattaagttgtagccta |
29373123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 454 - 538
Target Start/End: Original strand, 29371869 - 29371953
Alignment:
| Q |
454 |
taataatctaatgtagaaacggaaaacaaaggcctagactcttctagttttagaaacatcttcaagcacttataaatagaattat |
538 |
Q |
| |
|
||||||| |||||| |||| || ||||||| | ||||| | ||| ||| ||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
29371869 |
taataatgtaatgtggaaaaggcaaacaaaagtctagattattcaagtattataaacatcttcaagcacttataaatagatttat |
29371953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 97
Target Start/End: Complemental strand, 22055986 - 22055949
Alignment:
| Q |
60 |
acaaggaaaattactagagcaactaatgagcaagaatg |
97 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
22055986 |
acaaggaaaattactagagaaactaaggagcaagaatg |
22055949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 313 - 532
Target Start/End: Complemental strand, 22622650 - 22622429
Alignment:
| Q |
313 |
ttgaaattgatacatatttttagaatattctagttaaaa-aatgacaatgtctaatcagagaaactagagtagcttaaagttgctacatgttt-tagatt |
410 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| ||||| |||||||| | | |||||| | |||||||||||||| |||||||| |||||| |
|
|
| T |
22622650 |
ttgaaattgatacatatttctagaatattctagttaaaataatgataatgtctattagaaaaaactataatagcttaaagttgccacatgtttctagatt |
22622551 |
T |
|
| Q |
411 |
gttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacggaaaacaaaggcctagactcttctagttttagaaac |
510 |
Q |
| |
|
||||||||||| |||| |||||||| ||||||| ||||||||| |||| ||||||||||||| || |||||||| |||||| | ||||| || ||||||| |
|
|
| T |
22622550 |
gttctattaatatctagattaaattgtagcctaaaaacatctacaatattctaatgtagaaaaggcaaacaaagacctagattattctaattctagaaac |
22622451 |
T |
|
| Q |
511 |
atcttcaagcacttataaatag |
532 |
Q |
| |
|
||||||| |||||||||||||| |
|
|
| T |
22622450 |
atcttcaggcacttataaatag |
22622429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0406 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: scaffold0406
Description:
Target: scaffold0406; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 131 - 538
Target Start/End: Original strand, 5936 - 6330
Alignment:
| Q |
131 |
agaccgataacaaatattatgacaagagatgacacaaatttactatcacggtggaggtaacacttgataaattgatcaaccatgaaaag---caatgcat |
227 |
Q |
| |
|
||||| ||||||||||||||| ||| ||||| ||||||||| |||||| |||||||||||||| || |||||||||||| | ||| || ||||||| |
|
|
| T |
5936 |
agaccaataacaaatattatggcaatagatgtcacaaattttctatcatggtggaggtaacacctgtcaaattgatcaactacgaagagtttcaatgcag |
6035 |
T |
|
| Q |
228 |
gacaagatgatatcaaaaatctatgattgagcaactacatactacattaatttggagtttttgaaatatgcatcaaggatgatttttgaaat-tgataca |
326 |
Q |
| |
|
|| ||||||| || ||||||||| ||||||||||| ||||||||| || |||||| ||||||||||||||||| || | ||||||| |||| || |
|
|
| T |
6036 |
gaggggatgatagcacaaatctatgtttgagcaactaagtactacatt----tgaagttttcgaaatatgcatcaaggaggagtgttgaaatatgatgca |
6131 |
T |
|
| Q |
327 |
tatttttagaatattctagttaaaaaatgacaatgtctaatcagagaaa-ctagagtagcttaaagttgctacatgtttt-agattgttctattaatgtc |
424 |
Q |
| |
|
|||| |||| |||||| ||| ||| | ||||||| ||||| || | |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6132 |
catttctagatatttctag------aat-acatt--------agagaaaactagaataacataaagttgctacatgtttcgagattgttctattaatgtc |
6216 |
T |
|
| Q |
425 |
taaattaaattatagcctagaaacatctataataatctaatgtagaaacggaaaacaaaggcctagactcttctagttttagaaacatcttcaagcactt |
524 |
Q |
| |
|
|| |||| ||| ||||||||||||||||||||||||| || ||| | || ||||||||||||||| | |||||||| |||||||| |||||||||| | |
|
|
| T |
6217 |
taggttaagttaaagcctagaaacatctataataatcttgtgcagataaggcaaacaaaggcctagattattctagttctagaaacagcttcaagcacct |
6316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 313 - 533
Target Start/End: Original strand, 28786834 - 28787053
Alignment:
| Q |
313 |
ttgaaattgatacatatttttagaatattctagttaaaa-aatgacaatgtctaatcagagaaa-ctagagtagcttaaagttgctacatgttt-tagat |
409 |
Q |
| |
|
|||||||||||| |||||| || ||||||||||||||| ||||||||| | || ||||||| ||||| || |||||||||||||||||||| || || |
|
|
| T |
28786834 |
ttgaaattgatatatatttctaaaatattctagttaaattaatgacaatttt--attagagaaaactagaataacttaaagttgctacatgtttctaaat |
28786931 |
T |
|
| Q |
410 |
tgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacggaaaacaaaggcctagactcttctagttttagaaa |
509 |
Q |
| |
|
|||| ||||||||||| ||||| || ||||||||||||||||||||| |||| ||||||||| |||| ||||||||||| | | | ||||| |||||| |
|
|
| T |
28786932 |
tgttatattaatgtctcgattaagttgtagcctagaaacatctataattatcttatgtagaaaaggaatacaaaggcctaaattat--tagttctagaaa |
28787029 |
T |
|
| Q |
510 |
catcttcaagcacttataaataga |
533 |
Q |
| |
|
||||||||||||| |||||||||| |
|
|
| T |
28787030 |
catcttcaagcacctataaataga |
28787053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 373 - 538
Target Start/End: Original strand, 24853230 - 24853396
Alignment:
| Q |
373 |
aaactagagtagcttaaagttgctacatgttt-tagattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaa |
471 |
Q |
| |
|
|||||||| || | ||||||| ||| |||||| ||||||||||||||||| | |||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24853230 |
aaactagaataacataaagtttctaaatgtttctagattgttctattaatatataaattaagttatagccaagaaacatctataataatctaatgtagaa |
24853329 |
T |
|
| Q |
472 |
acggaaaacaaaggcctagactcttctagttttagaaacatcttcaagcacttataaatagaattat |
538 |
Q |
| |
|
| || ||||||||||||| | | |||||||| || |||||||||| | ||| |||||||||| |||| |
|
|
| T |
24853330 |
aaggcaaacaaaggcctaaattattctagttctaaaaacatcttctaacacctataaatagacttat |
24853396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 108 - 538
Target Start/End: Complemental strand, 17525951 - 17525539
Alignment:
| Q |
108 |
gaagtcttcaacaagattgga-ggagaccgataacaaatattatgacaagagatgacacaaatttactatcacggtggaggtaacacttgataaattgat |
206 |
Q |
| |
|
||||||||||||||||| | ||||||| ||||||||||||||| |||||| || ||||||||| |||||| ||| ||||| || |||||||| |
|
|
| T |
17525951 |
gaagtcttcaacaagatcacaaggagaccaataacaaatattatggcaagaggtggcacaaatttcctatcatggt------aacacctgtcaaattgat |
17525858 |
T |
|
| Q |
207 |
caaccatgaaaag---caatgcatgacaagatgatatcaaaaatctatgattgagcaactacatactacattaatttggagtttttgaaatatgcatcaa |
303 |
Q |
| |
|
|||| ||||| || ||||||| || |||||||| | |||||||||| |||||||||||| |||||| ||||| |||||| |||||||||||||| |
|
|
| T |
17525857 |
caactatgaagagtatcaatgcaagaggagatgatagcgaaaatctatgtttgagcaactacgtactac----atttgaagttttcgaaatatgcatcaa |
17525762 |
T |
|
| Q |
304 |
ggatgatttttgaaat-tgatacatatttttagaata-ttctagttaaaaaatgacaatgtctaatcagagaaa-ctagagtagcttaaagttgctacat |
400 |
Q |
| |
|
||| || | ||||||| |||| || |||| || |||| |||||| ||| || || ||||||| ||||| || | |||||||||||||| |
|
|
| T |
17525761 |
ggaggagtgttgaaatatgatgcacatttcta-aatatttctag------aat-ac--------attagagaaagctagattaacataaagttgctacat |
17525678 |
T |
|
| Q |
401 |
gttt-tagattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacggaaaacaaaggcctagactcttcta |
499 |
Q |
| |
|
|||| | |||| ||||||||||||||| |||| ||| ||||||||||||||||||||||||| |||||| | || ||||||||||||||| | ||||| |
|
|
| T |
17525677 |
gtttcttgattattctattaatgtctaggttaagttaaagcctagaaacatctataataatcttgtgtagataaggcaaacaaaggcctagattattcta |
17525578 |
T |
|
| Q |
500 |
gttttagaaacatcttcaagcacttataaatagaattat |
538 |
Q |
| |
|
||| ||||||||||| ||||| |||||||||||| |||| |
|
|
| T |
17525577 |
gttctagaaacatctacaagcgcttataaatagacttat |
17525539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 128 - 360
Target Start/End: Original strand, 28787655 - 28787883
Alignment:
| Q |
128 |
aggagaccgataacaaatattatgacaagagatgacacaaatttactatcacggtggaggtaacacttgataaattgatcaaccatgaaaag---caatg |
224 |
Q |
| |
|
|||||||| ||||||||||||||| |||||| ||||||||||||||| | | ||||| ||||||| || |||||||||||| ||||| || ||||| |
|
|
| T |
28787655 |
aggagaccaataacaaatattatggcaagaggtgacacaaatttactgttatagtggatgtaacacctgtcaaattgatcaactatgaagagtatcaatg |
28787754 |
T |
|
| Q |
225 |
catgacaagatgatatcaaaaatctatgattgagcaactacatactacattaatttggagtttttgaaatatgcatcaaggatgatttttgaaattgata |
324 |
Q |
| |
|
|| || |||||||||| ||||||||| | ||||||||| ||||||| | |||||||||||||| |||||||||||| || | |||||||||||| |
|
|
| T |
28787755 |
cagga---gatgatatcacaaatctatgttcgagcaactaggtactacaat----tggagtttttgaaa-atgcatcaaggaggagtgttgaaattgata |
28787846 |
T |
|
| Q |
325 |
catatttttagaatattctagttaaaa-aatgacaat |
360 |
Q |
| |
|
||||||| ||||| |||| |||||||| ||||||||| |
|
|
| T |
28787847 |
catatttctagaacattccagttaaaataatgacaat |
28787883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 388 - 538
Target Start/End: Original strand, 51246521 - 51246672
Alignment:
| Q |
388 |
aaagttgctacatgttt-tagattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacggaaaacaaaggc |
486 |
Q |
| |
|
|||||||||| |||||| ||||||| |||||||||||||| |||| ||| ||||||||||||||||||||||||| |||||| | || |||||||||| |
|
|
| T |
51246521 |
aaagttgctagatgtttctagattgctctattaatgtctaggttaagttaaagcctagaaacatctataataatcttgtgtagataaggcaaacaaaggc |
51246620 |
T |
|
| Q |
487 |
ctagactcttctagttttagaaacatcttcaagcacttataaatagaattat |
538 |
Q |
| |
|
||||| | |||||||| ||||||||||| ||||||| ||||| |||| |||| |
|
|
| T |
51246621 |
ctagattattctagttctagaaacatctacaagcacctataagtagacttat |
51246672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 415 - 533
Target Start/End: Original strand, 28787887 - 28788005
Alignment:
| Q |
415 |
tattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacggaaaacaaaggcctagactcttctagttttagaaacatct |
514 |
Q |
| |
|
||||| ||||| ||||| || ||||||||||| ||||||||| |||||||||| ||| |||||||||||||||||| | |||||||| ||||||||||| |
|
|
| T |
28787887 |
tattattgtctcgattaagttgtagcctagaaatatctataattatctaatgtacaaaaggaaaacaaaggcctagattattctagttctagaaacatct |
28787986 |
T |
|
| Q |
515 |
tcaagcacttataaataga |
533 |
Q |
| |
|
|||| ||| |||||||||| |
|
|
| T |
28787987 |
tcaaacacctataaataga |
28788005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 128 - 306
Target Start/End: Complemental strand, 6824292 - 6824115
Alignment:
| Q |
128 |
aggagaccgataacaaatattatgacaagagatgacacaaatttactatcacggtggaggtaacacttgataaattgatcaaccatgaaaag---caatg |
224 |
Q |
| |
|
|||||| | ||||||||||||||| |||||| || |||||||| |||||| ||||||| |||||| || |||||||||||| ||||| || ||||| |
|
|
| T |
6824292 |
aggagatcaataacaaatattatggcaagaggtggcacaaattctctatcatggtggagctaacacctgtcaaattgatcaactatgaagagtttcaatg |
6824193 |
T |
|
| Q |
225 |
catgacaagatgatatcaaaaatctatgattgagcaactacatactacattaatttggagtttttgaaatatgcatcaagga |
306 |
Q |
| |
|
|| || |||||||| || ||||||||| |||||||||||| |||||| ||||| |||||| ||||||||||||||||| |
|
|
| T |
6824192 |
caggaggagatgataacacaaatctatgtttgagcaactacgtactac----atttgaagttttcgaaatatgcatcaagga |
6824115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 376 - 538
Target Start/End: Original strand, 24856133 - 24856287
Alignment:
| Q |
376 |
ctagagtagcttaaagttgctacatgttt-tagattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacg |
474 |
Q |
| |
|
||||| || |||||||||||||||||||| |||||||||||||||||||||| |||| ||| |||||| ||||| ||| |||||||| || | |
|
|
| T |
24856133 |
ctagaataacttaaagttgctacatgtttctagattgttctattaatgtctagtttaagttaaagcctataaaca-----aat----taatgtaggaaag |
24856223 |
T |
|
| Q |
475 |
gaaaacaaaggcctagactcttctagttttagaaacatcttcaagcacttataaatagaattat |
538 |
Q |
| |
|
| ||||||||||||||| | |||||||| ||||||||| ||| | ||| |||||||||| |||| |
|
|
| T |
24856224 |
gcaaacaaaggcctagattattctagttctagaaacattttctaacacctataaatagacttat |
24856287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 387 - 538
Target Start/End: Original strand, 12739240 - 12739392
Alignment:
| Q |
387 |
taaagttgctacatgttt-tagattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacggaaaacaaagg |
485 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||| |||| ||| ||||||||||||||||||||||||| |||||||| || ||||||| | |
|
|
| T |
12739240 |
taaagttgctacatgtttctagattgttctattaatatctaggttaagttacagcctagaaacatctataataatcttgtgtagaaaaggcaaacaaaag |
12739339 |
T |
|
| Q |
486 |
cctagactcttctagttttagaaacatcttcaagcacttataaatagaattat |
538 |
Q |
| |
|
|||||| | || ||||| ||||||||||| |||||| ||||||||||||||| |
|
|
| T |
12739340 |
cctagattattttagttctagaaacatctacaagcatctataaatagaattat |
12739392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 387 - 531
Target Start/End: Original strand, 12738089 - 12738234
Alignment:
| Q |
387 |
taaagttgctacatgttt-tagattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacggaaaacaaagg |
485 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| ||||| || |||||||||||||| ||||| |||| |||||||| || ||||||| | |
|
|
| T |
12738089 |
taaagttgctacatgtttgtagattgttctattaatgtctagattaaggtaaagcctagaaacatcaataattatcttgtgtagaaaaggcaaacaaaag |
12738188 |
T |
|
| Q |
486 |
cctagactcttctagttttagaaacatcttcaagcacttataaata |
531 |
Q |
| |
|
|||||| || ||||| ||||||||||| ||||||| |||||||| |
|
|
| T |
12738189 |
cctagataattttagttctagaaacatctacaagcacctataaata |
12738234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 313 - 454
Target Start/End: Original strand, 1896723 - 1896865
Alignment:
| Q |
313 |
ttgaaattgatacatatttttagaatattctag-ttaaaaaatgacaatgtctaatcagagaaactagagtagcttaaagttgctacatgttt-tagatt |
410 |
Q |
| |
|
||||||| |||| |||||| ||||||||||||| ||||||||||||||||||| || ||| |||||||| |||||||||||||| |||||||| || ||| |
|
|
| T |
1896723 |
ttgaaatagataaatatttctagaatattctagtttaaaaaatgacaatgtct-attagaaaaactagaatagcttaaagttgccacatgtttatatatt |
1896821 |
T |
|
| Q |
411 |
gttctattaatgtctaaattaaattatagcctagaaacatctat |
454 |
Q |
| |
|
|||||||| ||| ||| |||| || |||||||||||||||||| |
|
|
| T |
1896822 |
gttctattgatgactaggttaagttgtagcctagaaacatctat |
1896865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 313 - 454
Target Start/End: Original strand, 1906169 - 1906311
Alignment:
| Q |
313 |
ttgaaattgatacatatttttagaatattctag-ttaaaaaatgacaatgtctaatcagagaaactagagtagcttaaagttgctacatgttt-tagatt |
410 |
Q |
| |
|
||||||| |||| |||||| ||||||||||||| ||||||||||||||||||| || ||| |||||||| |||||||||||||| |||||||| || ||| |
|
|
| T |
1906169 |
ttgaaatagataaatatttctagaatattctagtttaaaaaatgacaatgtct-attagaaaaactagaatagcttaaagttgccacatgtttatatatt |
1906267 |
T |
|
| Q |
411 |
gttctattaatgtctaaattaaattatagcctagaaacatctat |
454 |
Q |
| |
|
|||||||| ||| ||| |||| || |||||||||||||||||| |
|
|
| T |
1906268 |
gttctattgatgactaggttaagttgtagcctagaaacatctat |
1906311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 312 - 405
Target Start/End: Complemental strand, 2932913 - 2932818
Alignment:
| Q |
312 |
tttgaaattgatacatatttttagaatattctagttaa--aaaatgacaatgtctaatcagagaaactagagtagcttaaagttgctacatgtttt |
405 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||| | | |||||||| ||||||||||||||||||| |||| |
|
|
| T |
2932913 |
tttgaaattgatacatatttctagaatattctagttaaaaaaaatgacaatgtctattagaaaaaactagaatagcttaaagttgctacatatttt |
2932818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 393 - 532
Target Start/End: Original strand, 15022963 - 15023103
Alignment:
| Q |
393 |
tgctacatgttt-tagattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacggaaaacaaaggcctaga |
491 |
Q |
| |
|
||||| |||||| ||||||||||||||||||| || || | ||| || ||| |||||||||||||||||| |||||| | || ||||||| ||||||| |
|
|
| T |
15022963 |
tgctatatgtttctagattgttctattaatgtttaggttcagttaaagtctaaaaacatctataataatcttgtgtagataaggcaaacaaatgcctaga |
15023062 |
T |
|
| Q |
492 |
ctcttctagttttagaaacatcttcaagcacttataaatag |
532 |
Q |
| |
|
| || ||||| ||||||||||| ||||||| ||||||||| |
|
|
| T |
15023063 |
ttattttagttctagaaacatctacaagcacctataaatag |
15023103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 317 - 404
Target Start/End: Original strand, 1888660 - 1888748
Alignment:
| Q |
317 |
aattgatacatatttttagaatattctagtt-aaaaaatgacaatgtctaatcagagaaactagagtagcttaaagttgctacatgttt |
404 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| |||||||||||||||||| | | |||| ||| ||||| ||||||||||||||||| |
|
|
| T |
1888660 |
aattgatgcatatttctagaatattctagttaaaaaaatgacaatgtctattagaaaaaacaagaatagctaaaagttgctacatgttt |
1888748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 432
Target Start/End: Original strand, 12737463 - 12737509
Alignment:
| Q |
387 |
taaagttgctacatgttt-tagattgttctattaatgtctaaattaa |
432 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
12737463 |
taaagttgctacatgtttgtagattgttctattaatgtctagattaa |
12737509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 97
Target Start/End: Original strand, 12738970 - 12739007
Alignment:
| Q |
60 |
acaaggaaaattactagagcaactaatgagcaagaatg |
97 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
12738970 |
acaaggaaaattactagagcaactaaggagaaagaatg |
12739007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 395 - 514
Target Start/End: Complemental strand, 20979034 - 20978914
Alignment:
| Q |
395 |
ctacatgttt-tagattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacggaaaacaaaggcctagact |
493 |
Q |
| |
|
|||||||||| |||||||||||||| |||| || |||| ||| ||||||||||||||||||||||| | |||||| | || ||||||||| |||| | |
|
|
| T |
20979034 |
ctacatgtttctagattgttctattcatgtttaggttaagttaaagcctagaaacatctataataatattgtgtagataaggcaaacaaaggtatagatt |
20978935 |
T |
|
| Q |
494 |
cttctagttttagaaacatct |
514 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
20978934 |
attctagttctagaaacatct |
20978914 |
T |
|
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