View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14644_low_14 (Length: 256)

Name: NF14644_low_14
Description: NF14644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14644_low_14
NF14644_low_14
[»] chr1 (13 HSPs)
chr1 (102-256)||(49004599-49004758)
chr1 (1-111)||(26440724-26440836)
chr1 (1-85)||(32813265-32813349)
chr1 (1-104)||(37926436-37926541)
chr1 (3-81)||(51898683-51898761)
chr1 (3-83)||(2581935-2582015)
chr1 (1-81)||(8346386-8346466)
chr1 (1-102)||(45044558-45044661)
chr1 (1-102)||(49811525-49811628)
chr1 (1-83)||(47452318-47452400)
chr1 (3-101)||(6260870-6260970)
chr1 (1-77)||(13414787-13414863)
chr1 (1-85)||(27564733-27564817)
[»] chr7 (15 HSPs)
chr7 (1-104)||(26296641-26296746)
chr7 (1-85)||(21234419-21234503)
chr7 (8-85)||(46374807-46374884)
chr7 (1-85)||(35522894-35522978)
chr7 (1-82)||(46033799-46033880)
chr7 (1-83)||(3694387-3694469)
chr7 (1-85)||(3434580-3434664)
chr7 (1-85)||(19436185-19436269)
chr7 (1-83)||(8080381-8080463)
chr7 (1-83)||(38267060-38267142)
chr7 (1-107)||(41915735-41915843)
chr7 (1-106)||(22343356-22343463)
chr7 (1-83)||(3784015-3784097)
chr7 (1-83)||(7389409-7389491)
chr7 (1-85)||(19329860-19329944)
[»] chr6 (8 HSPs)
chr6 (1-106)||(31976243-31976350)
chr6 (1-81)||(15832599-15832679)
chr6 (1-83)||(32869698-32869780)
chr6 (1-82)||(11427639-11427720)
chr6 (1-85)||(31110759-31110841)
chr6 (1-83)||(22880656-22880738)
chr6 (1-81)||(4231570-4231650)
chr6 (1-85)||(9379710-9379794)
[»] chr5 (14 HSPs)
chr5 (1-85)||(26720534-26720618)
chr5 (1-85)||(26990283-26990367)
chr5 (1-85)||(2740292-2740376)
chr5 (1-85)||(28177793-28177877)
chr5 (1-109)||(2252166-2252276)
chr5 (3-82)||(14831835-14831914)
chr5 (1-83)||(33149636-33149718)
chr5 (1-103)||(6679696-6679800)
chr5 (9-85)||(15409616-15409692)
chr5 (1-83)||(18520882-18520964)
chr5 (3-102)||(31008987-31009088)
chr5 (1-83)||(40145427-40145509)
chr5 (3-81)||(20073516-20073594)
chr5 (34-96)||(16327906-16327970)
[»] chr8 (14 HSPs)
chr8 (1-85)||(4854861-4854945)
chr8 (1-85)||(10621085-10621169)
chr8 (1-83)||(12831067-12831149)
chr8 (1-108)||(15048180-15048288)
chr8 (1-83)||(34012294-34012376)
chr8 (1-85)||(43414579-43414663)
chr8 (1-83)||(10284629-10284711)
chr8 (3-81)||(37038501-37038579)
chr8 (1-82)||(15197354-15197435)
chr8 (33-85)||(20074964-20075016)
chr8 (1-105)||(32032721-32032826)
chr8 (1-83)||(14547942-14548024)
chr8 (1-55)||(15258927-15258981)
chr8 (32-101)||(30479503-30479574)
[»] chr3 (18 HSPs)
chr3 (1-85)||(41189762-41189846)
chr3 (1-108)||(11347920-11348029)
chr3 (1-85)||(26141530-26141614)
chr3 (1-85)||(51419358-51419442)
chr3 (1-85)||(20764913-20764997)
chr3 (35-83)||(33118883-33118931)
chr3 (1-83)||(26754715-26754797)
chr3 (1-83)||(53982031-53982113)
chr3 (34-96)||(13898086-13898150)
chr3 (1-85)||(24699952-24700036)
chr3 (1-83)||(11907391-11907473)
chr3 (1-83)||(33644220-33644302)
chr3 (1-81)||(9563021-9563101)
chr3 (1-81)||(17470427-17470507)
chr3 (33-85)||(35536644-35536696)
chr3 (33-85)||(35965804-35965856)
chr3 (35-83)||(36707456-36707504)
chr3 (1-85)||(47531883-47531967)
[»] chr2 (15 HSPs)
chr2 (1-85)||(40613900-40613984)
chr2 (1-103)||(36168834-36168938)
chr2 (1-82)||(5574486-5574567)
chr2 (1-81)||(42257215-42257295)
chr2 (1-108)||(38273140-38273249)
chr2 (1-83)||(10249380-10249462)
chr2 (1-83)||(13438363-13438445)
chr2 (1-83)||(17473040-17473122)
chr2 (1-83)||(28863475-28863557)
chr2 (3-83)||(32505648-32505728)
chr2 (13-101)||(43490121-43490211)
chr2 (1-83)||(30915483-30915565)
chr2 (1-83)||(33436098-33436180)
chr2 (1-85)||(33436229-33436313)
chr2 (1-102)||(45097733-45097836)
[»] chr4 (13 HSPs)
chr4 (1-83)||(24995105-24995187)
chr4 (1-85)||(31910210-31910294)
chr4 (1-102)||(55475190-55475293)
chr4 (1-83)||(11511460-11511542)
chr4 (1-85)||(50052426-50052510)
chr4 (1-83)||(480445-480527)
chr4 (1-83)||(6034064-6034146)
chr4 (1-85)||(40574797-40574881)
chr4 (1-65)||(41823920-41823984)
chr4 (1-85)||(48647724-48647808)
chr4 (1-83)||(48183047-48183129)
chr4 (31-101)||(8343191-8343263)
chr4 (21-102)||(29547977-29548060)
[»] scaffold1268 (1 HSPs)
scaffold1268 (1-81)||(927-1007)
[»] scaffold1267 (1 HSPs)
scaffold1267 (1-81)||(927-1007)


Alignment Details
Target: chr1 (Bit Score: 94; Significance: 6e-46; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 102 - 256
Target Start/End: Original strand, 49004599 - 49004758
Alignment:
Q  102 tattaataaaaccggaattctccaacaaattgtagattgtgtttgcatagtcttttgtaatttctttactata-----nnnnnnnatgaaaaattgtgct 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||    
T  49004599 tattaataaaaccggaattctccaacaaattgtagattgtgtttgcatagtcttttgtaatttctttactatatttttttttttaatgaaaaattgtgct 49004698  T
Q  197 gacattaaaactaagatgtatttggaatccnnnnnnntgtatactcttaataaaagaaat 256  Q
    || |||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  49004699 gaaattaaaactaagatgtatttggaatccaaaaaaatgtatactcttaataaaagaaat 49004758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 26440836 - 26440724
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagga--tttatctatcataa 98  Q
    ||||||| ||||||| ||| ||||||||| |||||||||||| |||||| ||||||||||||||||| |||||||| |||||||  | |||||||| |||    
T  26440836 agagaaagtgtgcttatgcgggatccatgtggccacgtgtcagatttttgtgtgggtgttaaagggtgtattgtcatctaaggatgtctatctatcctaa 26440737  T
Q  99 ctctattaataaa 111  Q
    |||  ||||||||    
T  26440736 ctcatttaataaa 26440724  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 32813349 - 32813265
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 85  Q
    ||||||| ||||||||||| || |||||| | |||||||||| |||||| ||||||||||||||||| ||||| |||||||||||    
T  32813349 agagaaagtgtgcttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggat 32813265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 37926436 - 37926541
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg--atttatctatcataa 98  Q
    ||||||| ||| ||||| | ||||||||| |||||||||||| |||||||||||||||||||| | | ||||| ||||||| |  || ||| ||||||||    
T  37926436 agagaaagtgtacttgtacgggatccatgtggccacgtgtcagatttttatgtgggtgttaaaagatgtattgccacctaaagatatctatgtatcataa 37926535  T
Q  99 ctctat 104  Q
    ||||||    
T  37926536 ctctat 37926541  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 51898683 - 51898761
Alignment:
Q  3 agaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaa 81  Q
    ||||| ||||||||||| ||||||| | | | |||||||| |||||| ||||||||| ||||||| ||||| |||||||    
T  51898683 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaa 51898761  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 2582015 - 2581935
Alignment:
Q  3 agaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 83  Q
    ||||| ||||||||||| || |||| | | | |||||||| |||||| ||||||||| ||||||| ||||| |||||||||    
T  2582015 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagg 2581935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 8346386 - 8346466
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaa 81  Q
    ||||||| |||||||||||||| |||| | | | |||||||| |||||| ||||||||| ||| ||| ||||| |||||||    
T  8346386 agagaaagtgtgcttgtgcagggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaa 8346466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 45044558 - 45044661
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg--atttatctatcataa 98  Q
    |||||||||||| |||||| || |||||| ||| || ||||| |||||| | ||||||| ||| ||| ||||| |||||||||  || ||| ||||||||    
T  45044558 agagaaaatgtgtttgtgcggggtccatgtggctacatgtcagatttttgtatgggtgtcaaatggtgtattgccacctaaggaaatgtatgtatcataa 45044657  T
Q  99 ctct 102  Q
    ||||    
T  45044658 ctct 45044661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 49811525 - 49811628
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagga--tttatctatcataa 98  Q
    ||||||| ||||||||||| |  || ||  ||| |||||||| |||||| ||||| ||| ||| ||| ||||||||||||||||  | ||||||||||||    
T  49811525 agagaaagtgtgcttgtgcggagtctatatggctacgtgtcagatttttgtgtggatgtcaaatggtgtattgtcacctaaggatgtctatctatcataa 49811624  T
Q  99 ctct 102  Q
    ||||    
T  49811625 ctct 49811628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 47452318 - 47452400
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 83  Q
    ||||||| ||||||||||| ||||||| | | | |||||| | |||||| ||||||||| ||||||| ||||  |||||||||    
T  47452318 agagaaagtgtgcttgtgcgggatccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattaccacctaagg 47452400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 101
Target Start/End: Complemental strand, 6260970 - 6260870
Alignment:
Q  3 agaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg--atttatctatcataact 100  Q
    ||||||||||||| ||| || |||| | | |||| ||| | ||||||||||||||||| | |||| ||||  |||||||||  || ||||||||||||||    
T  6260970 agaaaatgtgcttatgcggggtccacgtgaccacatgttagatttttatgtgggtgttcaggggtgtattaccacctaaggatatctatctatcataact 6260871  T
Q  101 c 101  Q
    |    
T  6260870 c 6260870  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 13414863 - 13414787
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcac 77  Q
    ||||||||||||||||||  || |||| | | | |||||| | |||||| ||||||||| ||||||| |||||||||    
T  13414863 agagaaaatgtgcttgtgtggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattgtcac 13414787  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 27564733 - 27564817
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 85  Q
    ||||||| ||||||||||| || |||| | |   |||||||| |||||| ||||||||| ||| ||| ||||| |||||||||||    
T  27564733 agagaaagtgtgcttgtgcggggtccacgtgattacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggat 27564817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 26296746 - 26296641
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagga--tttatctatcataa 98  Q
    |||||||||| |||||||| || |||||  |||||||| ||| |||||||||||| ||||||||||||||||||||||||||||  | ||| ||||||||    
T  26296746 agagaaaatgcgcttgtgcggggtccatatggccacgtatcagatttttatgtggatgttaaagggtatattgtcacctaaggatgtctatgtatcataa 26296647  T
Q  99 ctctat 104  Q
    ||||||    
T  26296646 ctctat 26296641  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 21234503 - 21234419
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 85  Q
    ||||||||||||||||||| || | |||| ||| ||||||||||||||| |||| |||| ||||||| |||||||||||||||||    
T  21234503 agagaaaatgtgcttgtgcggggtacatgtggctacgtgtcaaatttttgtgtgagtgtcaaagggtgtattgtcacctaaggat 21234419  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 46374807 - 46374884
Alignment:
Q  8 atgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 85  Q
    |||||||||||| || |||||| |||||||||||| |||||| ||||||||||||||||| | ||| |||||||||||    
T  46374807 atgtgcttgtgcggggtccatgtggccacgtgtcagatttttgtgtgggtgttaaagggtgtgttgccacctaaggat 46374884  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 35522978 - 35522894
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 85  Q
    ||||||| ||||||||||| ||||||||  |||||||||||| |||||| ||||||||||||| ||| ||||| ||| |||||||    
T  35522978 agagaaagtgtgcttgtgcgggatccatatggccacgtgtcagatttttgtgtgggtgttaaatggtgtattgccacttaaggat 35522894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 46033799 - 46033880
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaag 82  Q
    ||||||||| ||||||||| |  | |||| | |||||||||| |||||||||||||||||||||||| ||||| ||||||||    
T  46033799 agagaaaatatgcttgtgcggagttcatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaag 46033880  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 3694469 - 3694387
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 83  Q
    ||||||| ||||||||||| |||||||   | | |||||||| |||||| ||||||||||||| ||| |||||||||||||||    
T  3694469 agagaaagtgtgcttgtgcgggatccacatgactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgtcacctaagg 3694387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 3434664 - 3434580
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 85  Q
    ||||||| ||||||||||| ||||||| | | | ||||||||  ||||| ||||||||| ||||||| ||||| |||||||||||    
T  3434664 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagttttttgtgtgggtgtcaaagggtgtattgccacctaaggat 3434580  T

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Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 19436185 - 19436269
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 85  Q
    ||||||| ||||||| ||| ||||||| | | | |||||||| |||||| ||||||||| ||| ||| |||||||||||||||||    
T  19436185 agagaaagtgtgcttatgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaaggat 19436269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 8080381 - 8080463
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 83  Q
    ||||||| ||||||||||| || |||| | | | |||||||| |||||||||| ||||| ||||||| ||||| |||||||||    
T  8080381 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaagg 8080463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 38267142 - 38267060
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 83  Q
    ||||||| ||||||||||| || |||| | | | |||||||| |||||| ||||||||| ||||||| ||||||||| |||||    
T  38267142 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacataagg 38267060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 41915843 - 41915735
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat--ttatctatcataa 98  Q
    ||||||| ||| ||||||| || |||||  |||||| ||||| |||||| ||| ||||| || |||| ||||| ||||||||| |  |||| ||||||||    
T  41915843 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtaggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 41915744  T
Q  99 ctctattaa 107  Q
    |||||||||    
T  41915743 ctctattaa 41915735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 22343463 - 22343356
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat--ttatctatcataa 98  Q
    ||||||| ||| ||||||| || |||||  || ||| ||||| |||||| ||||||||| || |||| ||||| ||||||||| |  |||| ||||||||    
T  22343463 agagaaagtgtacttgtgcggggtccatatggtcacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 22343364  T
Q  99 ctctatta 106  Q
    ||||||||    
T  22343363 ctctatta 22343356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 3784097 - 3784015
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 83  Q
    ||||||| ||||||||||| ||||||| | | | |||||||| |||||| ||||||||| ||| | | ||||| |||||||||    
T  3784097 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaagatgtattgccacctaagg 3784015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 7389491 - 7389409
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 83  Q
    ||||||| ||||||||||| || |||| | | | |||||||| |||||| ||||||||| |||| || ||||| |||||||||    
T  7389491 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaagg 7389409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 19329944 - 19329860
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 85  Q
    ||||||| ||||||||||| || |||| | |   |||||||| |||||| ||||||||| ||| ||| ||||| |||||||||||    
T  19329944 agagaaagtgtgcttgtgcggggtccacgtgattacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggat 19329860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 31976350 - 31976243
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagga--tttatctatcataa 98  Q
    ||||||| ||||||||||| || | |||| | |||||||||| |||||| ||||||||||||||||||||||| ||||||||||  | ||| ||||||||    
T  31976350 agagaaagtgtgcttgtgcggggttcatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtatattgccacctaaggatgtctatgtatcataa 31976251  T
Q  99 ctctatta 106  Q
    ||||||||    
T  31976250 ctctatta 31976243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 15832679 - 15832599
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaa 81  Q
    |||||||||||  |||||||||||||| | | | ||||||||||||||| ||||||||| ||| | | |||||||||||||    
T  15832679 agagaaaatgtatttgtgcaggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaatgatttattgtcacctaa 15832599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 32869780 - 32869698
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 83  Q
    ||||||| ||||||||||| || |||| | | | |||||||| |||||| ||||||||| ||||||| ||||| |||||||||    
T  32869780 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagg 32869698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 11427720 - 11427639
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaag 82  Q
    ||||||| ||||||||||| ||||||| | | | |||||||| |||||| ||||||||| ||||| | ||||| ||||||||    
T  11427720 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgccacctaag 11427639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 31110759 - 31110841
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 85  Q
    ||||||| |||||||||||||| |||||| ||  |||||||| |||||  |||| |||| ||||||| ||||| |||||||||||    
T  31110759 agagaaagtgtgcttgtgcagggtccatgtggttacgtgtcagatttt--tgtgagtgtcaaagggtgtattgccacctaaggat 31110841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 22880656 - 22880738
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 83  Q
    ||||||| ||||||||||| || |||| | | | |||||||| | |||| ||||||||| ||||||| ||||| |||||||||    
T  22880656 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagaattttgtgtgggtgtcaaagggtgtattgccacctaagg 22880738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 4231650 - 4231570
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaa 81  Q
    ||||||| ||| ||||||| || |||||  |||||||||||| |||||| ||||||||  || |||| ||||| |||||||    
T  4231650 agagaaagtgtacttgtgcggggtccatatggccacgtgtcagatttttgtgtgggtggcaaggggtgtattgccacctaa 4231570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 9379710 - 9379794
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 85  Q
    |||||||||||| |||||   ||||||   ||||||||||||||||||| | ||||||| || || | |||||||| ||||||||    
T  9379710 agagaaaatgtgtttgtgtgagatccacatggccacgtgtcaaatttttgtatgggtgtcaagggatgtattgtcatctaaggat 9379794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 26720618 - 26720534
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 85  Q
    ||||||| ||||||||||| ||||||||| |||||||||||| |||||| ||| ||||||||||||| ||||| |||||||||||    
T  26720618 agagaaagtgtgcttgtgcgggatccatgtggccacgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaaggat 26720534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 26990367 - 26990283
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 85  Q
    ||||||| ||||||||||| ||||||||| |||||||||||| |||||| ||| ||||||||||||| ||||| |||||||||||    
T  26990367 agagaaagtgtgcttgtgcgggatccatgtggccacgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaaggat 26990283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 2740376 - 2740292
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 85  Q
    ||||||| ||||||||||| ||||||| | | | |||||||| |||||| ||||||||| ||||||| ||||| |||||||||||    
T  2740376 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggat 2740292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 28177877 - 28177793
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 85  Q
    ||||||| |||| |||||| || |||||| | |||||||||| |||||| ||||||||| ||||||| ||||| |||||||||||    
T  28177877 agagaaagtgtgtttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggat 28177793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 2252166 - 2252276
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagga--tttatctatcataa 98  Q
    ||||||| ||| ||||||| || |||||  |||||| ||||| |||||| ||||||||| || |||| ||||| ||||||||||  ||||| ||||||||    
T  2252166 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaaggatgtttatgtatcataa 2252265  T
Q  99 ctctattaata 109  Q
    |||||| ||||    
T  2252266 ctctataaata 2252276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 14831914 - 14831835
Alignment:
Q  3 agaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaag 82  Q
    ||||| ||||||||||| ||||||| | | | |||||||| |||||||||||||||| ||||||| ||||| ||||||||    
T  14831914 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaag 14831835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 33149636 - 33149718
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 83  Q
    ||||||| ||||||||||| ||||||| | | | ||||||||||||||| ||||||||| ||||||| ||||  |||||||||    
T  33149636 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagg 33149718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 6679800 - 6679696
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagga--tttatctatcataa 98  Q
    |||||||||||| |||||| || |||||| | |||||||||| |||||| ||||||||| ||| ||| ||||| ||||||| ||  | ||| ||||||||    
T  6679800 agagaaaatgtgtttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaagatgtctatgtatcataa 6679701  T
Q  99 ctcta 103  Q
    |||||    
T  6679700 ctcta 6679696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 15409616 - 15409692
Alignment:
Q  9 tgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 85  Q
    ||||||||||| || |||||| ||| |||||||| |||||| ||||||||| ||||  | |||||||||||||||||    
T  15409616 tgtgcttgtgcggggtccatgtggctacgtgtcagatttttgtgtgggtgtcaaagaatgtattgtcacctaaggat 15409692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 18520882 - 18520964
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 83  Q
    ||||||| ||||||||||| || |||| | | | |||||||| |||||| ||||||||| ||||||| ||||| |||||||||    
T  18520882 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagg 18520964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 102
Target Start/End: Complemental strand, 31009088 - 31008987
Alignment:
Q  3 agaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagga--tttatctatcataact 100  Q
    ||||| ||||||||||| ||||||| | | | |||||||| |||||| |||||||||  |||  | ||||||||||||||||  ||||| ||||||||||    
T  31009088 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtggaagaatgtattgtcacctaaggatgtttatgtatcataact 31008989  T
Q  101 ct 102  Q
    ||    
T  31008988 ct 31008987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 40145509 - 40145427
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 83  Q
    ||||||| ||||||||||| || |||| | | | |||||||| |||||| ||||| ||||||||||| ||||| |||||||||    
T  40145509 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgttaaagggtgtattgccacctaagg 40145427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 20073516 - 20073594
Alignment:
Q  3 agaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaa 81  Q
    ||||| |||||||||||||| |||| | || ||||||  | ||||||||||| |||| ||||||| |||||||| ||||    
T  20073516 agaaagtgtgcttgtgcagggtccacgtggtcacgtgcaagatttttatgtgagtgtcaaagggtgtattgtcatctaa 20073594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 16327970 - 16327906
Alignment:
Q  34 cacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg--atttatctatcat 96  Q
    ||||||||| |||||||||||||||| || || | ||||| |||||||||  |||||||||||||    
T  16327970 cacgtgtcagatttttatgtgggtgtcaatggatgtattgccacctaaggatatttatctatcat 16327906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 4854861 - 4854945
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 85  Q
    ||||||| |||||||||||||| |||||| |||||| | ||| |||||||||| ||||||||||||| ||||| |||||||||||    
T  4854861 agagaaagtgtgcttgtgcagggtccatgtggccacatatcagatttttatgtaggtgttaaagggtgtattgccacctaaggat 4854945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 10621085 - 10621169
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 85  Q
    ||||||| ||||||||||| ||||| ||| ||| |||||||| |||||| ||||||||| ||||||| ||||  |||||||||||    
T  10621085 agagaaagtgtgcttgtgcgggatcgatgtggctacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggat 10621169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 12831149 - 12831067
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 83  Q
    ||||||| ||||||||||| || |||| | | | |||||||| |||||| ||||||||| ||||||| |||||||||||||||    
T  12831149 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagg 12831067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 15048180 - 15048288
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagga--tttatctatcataa 98  Q
    ||||||| ||||||||||| || |||||| ||| |||||||| |||||| ||| ||||| ||||||| ||||| ||||||||||  | ||| ||||||||    
T  15048180 agagaaagtgtgcttgtgcggggtccatgtggctacgtgtcagatttttgtgt-ggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataa 15048278  T
Q  99 ctctattaat 108  Q
    ||| ||||||    
T  15048279 ctcaattaat 15048288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 34012294 - 34012376
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 83  Q
    ||||||| ||||||||||| ||||||| | | | ||||||||||||||| ||||||||| ||||||| ||||  |||||||||    
T  34012294 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagg 34012376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 43414579 - 43414663
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 85  Q
    ||||||| ||||||||||| ||||||||| | |||||||| | |||||| ||||||||| ||||||| | ||| || ||||||||    
T  43414579 agagaaagtgtgcttgtgcgggatccatgtgaccacgtgttagatttttgtgtgggtgtcaaagggtgtgttgccatctaaggat 43414663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 10284629 - 10284711
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 83  Q
    ||||||| ||||||||||| || |||| | | | ||||||||||||||| ||||||||| |||| || ||||||||| |||||    
T  10284629 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagagtgtattgtcacttaagg 10284711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 37038579 - 37038501
Alignment:
Q  3 agaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaa 81  Q
    ||||| ||||||||||| ||||||| | | | |||||||| |||||| ||||||||| ||||||| ||||| |||||||    
T  37038579 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaa 37038501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 15197435 - 15197354
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaag 82  Q
    ||||||| ||||||||||| || |||| | | | |||||||| |||||| ||||||||| ||||||| ||||| ||||||||    
T  15197435 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaag 15197354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 20074964 - 20075016
Alignment:
Q  33 ccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 85  Q
    |||||||||| |||||||||||||||| |||| || ||||| |||||||||||    
T  20074964 ccacgtgtcacatttttatgtgggtgtcaaagagtgtattgccacctaaggat 20075016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 32032826 - 32032721
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg--atttatctatcataa 98  Q
    ||||||| ||| ||||||||||||||||  |||||| ||||| |||||| ||||| || | |||| | ||||| |||||||||   ||||| ||||||||    
T  32032826 agagaaagtgtacttgtgcaggatccatatggccacatgtcagatttttgtgtggatg-tcaaggatgtattgccacctaagggtgtttatgtatcataa 32032728  T
Q  99 ctctatt 105  Q
    |||||||    
T  32032727 ctctatt 32032721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 14548024 - 14547942
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 83  Q
    ||||||| ||||||||||| || |||| | | | |||||||| |||||| ||||||||| ||| ||| ||||| |||||||||    
T  14548024 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaagg 14547942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 15258927 - 15258981
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgg 55  Q
    |||||||||||||||||||||| |||| | | |||| ||||| ||||||||||||    
T  15258927 agagaaaatgtgcttgtgcagggtccacgtgaccacatgtcagatttttatgtgg 15258981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 30479503 - 30479574
Alignment:
Q  32 gccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg--atttatctatcataactc 101  Q
    ||||| ||||| |||||||||||| ||| ||||||| ||||| |||||||||   ||||| |||||||||||    
T  30479503 gccacatgtcagatttttatgtggatgtcaaagggtgtattgccacctaagggtgtttatgtatcataactc 30479574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 41189762 - 41189846
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 85  Q
    ||||||| ||||||||||| || |||||| ||||||||||||||||||||||||||||| ||| | | ||||| |||||||||||    
T  41189762 agagaaagtgtgcttgtgcggggtccatgtggccacgtgtcaaatttttatgtgggtgtcaaatgatgtattgccacctaaggat 41189846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 11347920 - 11348029
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagga--tttatctatcataa 98  Q
    ||||||| ||||||| |||||| |||||| |||||||||||| |||||| ||||| ||| ||||| | ||||||||||||||||  | ||| ||||||||    
T  11347920 agagaaagtgtgcttatgcagggtccatgtggccacgtgtcagatttttgtgtggatgtcaaaggatgtattgtcacctaaggatgtctatgtatcataa 11348019  T
Q  99 ctctattaat 108  Q
    |||| |||||    
T  11348020 ctcttttaat 11348029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 26141530 - 26141614
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 85  Q
    ||||||| ||||||||||  || |||||| | |||||||||| |||||| ||||||||||||||||| ||||| |||||||||||    
T  26141530 agagaaagtgtgcttgtgtggggtccatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggat 26141614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 51419358 - 51419442
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 85  Q
    ||||||| ||||||||||| || || ||| |||||||||||| |||||| ||||||||||||||| | |||||||| ||||||||    
T  51419358 agagaaagtgtgcttgtgcggggtctatgtggccacgtgtcagatttttgtgtgggtgttaaaggatgtattgtcatctaaggat 51419442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 20764913 - 20764997
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 85  Q
    ||||||| ||||||||| | || |||||| |||||||||||| |||||| |||||||||||||| || ||||  |||||||||||    
T  20764913 agagaaagtgtgcttgtacggggtccatgtggccacgtgtcagatttttgtgtgggtgttaaagagtgtattaccacctaaggat 20764997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 33118883 - 33118931
Alignment:
Q  35 acgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 83  Q
    ||||||||||||||| ||||||||| ||||||| |||||||||||||||    
T  33118883 acgtgtcaaatttttgtgtgggtgtcaaagggtgtattgtcacctaagg 33118931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 26754797 - 26754715
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 83  Q
    ||||||||||||||||||| || |||||| | |||| ||||| |||||| ||||| |||  |||||| ||||| |||||||||    
T  26754797 agagaaaatgtgcttgtgcggggtccatgtgaccacatgtcagatttttgtgtggatgtccaagggtgtattgccacctaagg 26754715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 53982113 - 53982031
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 83  Q
    ||||||| ||||||||||| || |||| | | | |||||||| |||||| ||||||||| ||||||| ||||| |||||||||    
T  53982113 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagg 53982031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 96
Target Start/End: Original strand, 13898086 - 13898150
Alignment:
Q  34 cacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagga--tttatctatcat 96  Q
    ||||||||| |||||||||||||||| || |||| ||||| ||||||||||  ||||||||||||    
T  13898086 cacgtgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtttatctatcat 13898150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 24699952 - 24700036
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 85  Q
    ||||||| |||| |||| |||| |||| | ||||||||| || |||||||||||||||| ||| ||| ||||| || ||||||||    
T  24699952 agagaaagtgtgtttgtacagggtccacgtggccacgtgccagatttttatgtgggtgtcaaaaggtgtattgccaactaaggat 24700036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 11907473 - 11907391
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 83  Q
    ||||||||||||||||||| || |||||  | |||| ||||| |||||| |||| ||||| | | || |||||||||||||||    
T  11907473 agagaaaatgtgcttgtgcggggtccatatgaccacatgtcagatttttgtgtgagtgttcaggtgtgtattgtcacctaagg 11907391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 33644302 - 33644220
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 83  Q
    ||||||| ||||||||||| || |||| | | | |||||||| |||||| ||||||||| ||||||| ||||| |||| ||||    
T  33644302 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacccaagg 33644220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 9563101 - 9563021
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaa 81  Q
    ||||||| |||| |||||||||||||| | | | |||||||| |||||||| ||| ||| ||||| | |||||||| ||||    
T  9563101 agagaaagtgtgtttgtgcaggatccacgtgactacgtgtcagatttttatatggatgtcaaaggttgtattgtcatctaa 9563021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 17470507 - 17470427
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaa 81  Q
    ||||||| ||||||||||  || |||| | | | |||||||| |||||| ||||||||||||| ||| ||||| |||||||    
T  17470507 agagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgccacctaa 17470427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 35536696 - 35536644
Alignment:
Q  33 ccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 85  Q
    |||||||||| |||||||||||||||| ||| ||| ||||| ||| |||||||    
T  35536696 ccacgtgtcacatttttatgtgggtgtcaaatggtgtattgccacataaggat 35536644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 35965804 - 35965856
Alignment:
Q  33 ccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 85  Q
    |||||||||| |||||||||||||||| ||||| | |||| |||| |||||||    
T  35965804 ccacgtgtcagatttttatgtgggtgtcaaaggatgtattatcacttaaggat 35965856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 36707456 - 36707504
Alignment:
Q  35 acgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 83  Q
    |||||||| |||||| ||||| ||| ||||||| |||||||||||||||    
T  36707456 acgtgtcagatttttgtgtggatgtcaaagggtgtattgtcacctaagg 36707504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 47531967 - 47531883
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 85  Q
    ||||||| ||||||||||| || | |||  |||||||||||| ||| || ||||| ||||||| ||| ||||| || ||||||||    
T  47531967 agagaaagtgtgcttgtgcggggttcatatggccacgtgtcagattcttgtgtggatgttaaaaggtgtattgccatctaaggat 47531883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 40613900 - 40613984
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 85  Q
    ||||||| ||||||||||| || |||||| |||||||||||| |||||| ||||||||| ||||||| ||||| |||||||||||    
T  40613900 agagaaagtgtgcttgtgcggggtccatgtggccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggat 40613984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 36168938 - 36168834
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagga--tttatctatcataa 98  Q
    ||||||| | ||||||||| || |||||| ||||||||||||||||||| |||||| |||||||| | |||||||| |||||||  | ||| ||||||||    
T  36168938 agagaaagtatgcttgtgcggggtccatgtggccacgtgtcaaatttttgtgtgggagttaaaggatgtattgtcatctaaggatgtctatgtatcataa 36168839  T
Q  99 ctcta 103  Q
    |||||    
T  36168838 ctcta 36168834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 5574486 - 5574567
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaag 82  Q
    ||||||| ||||||||||| ||||||| | | | |||||||| |||||||||||||||| ||||||| ||||| ||||||||    
T  5574486 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaag 5574567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 42257295 - 42257215
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaa 81  Q
    ||||||| ||||||||||| || |||||| |||||||||||| |||||||||||||||| ||| | | ||||| |||||||    
T  42257295 agagaaagtgtgcttgtgcggggtccatgtggccacgtgtcagatttttatgtgggtgtcaaatgatgtattgccacctaa 42257215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 38273140 - 38273249
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagga--tttatctatcataa 98  Q
    ||||||| |||||| |||| || |||||| ||| |||||||| |||||| ||||||||||||||||| ||||| || ||||| |  | ||| ||||||||    
T  38273140 agagaaagtgtgctagtgcggggtccatgtggctacgtgtcagatttttgtgtgggtgttaaagggtgtattgccatctaagaatgtctatgtatcataa 38273239  T
Q  99 ctctattaat 108  Q
    |||| |||||    
T  38273240 ctcttttaat 38273249  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 10249380 - 10249462
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 83  Q
    ||||||| ||||||||||| || |||| | | | |||||||| |||||| ||||||||| ||| ||| |||||||||||||||    
T  10249380 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagg 10249462  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 13438445 - 13438363
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 83  Q
    ||||||| ||||||||||| || |||| | | | |||||||| |||||| ||||||||| ||||| | |||||||||||||||    
T  13438445 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgtcacctaagg 13438363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 17473122 - 17473040
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 83  Q
    ||||||| ||||||||||| ||||||| | | | |||||||| |||||| ||||||||| ||||||| ||||| || ||||||    
T  17473122 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagg 17473040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 28863557 - 28863475
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 83  Q
    ||||||| ||||||||||| || |||| | | | |||||||| |||||| ||||||||| ||||||| ||||| |||||||||    
T  28863557 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagg 28863475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 32505648 - 32505728
Alignment:
Q  3 agaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 83  Q
    ||||| ||||||||||| || |||| | | | |||||||| |||||| ||||||||| ||| ||| |||||||||||||||    
T  32505648 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagg 32505728  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 43490211 - 43490121
Alignment:
Q  13 cttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg--atttatctatcataactc 101  Q
    ||||||| || |||||  |||||| ||||| |||||| ||||||||| || |||| |||||||||||||||   ||||| |||||||||||    
T  43490211 cttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgtcacctaagggtgtttatgtatcataactc 43490121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 30915565 - 30915483
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 83  Q
    ||||||| ||||||||| | || |||| | | | |||||||| ||||||||||||| || ||||||| ||||| |||||||||    
T  30915565 agagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttatgtgggggtcaaagggtgtattgccacctaagg 30915483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 33436098 - 33436180
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 83  Q
    ||||||| ||||||||||| || |||| | | | |||||| | |||||| ||||||||| ||||||| ||||| |||||||||    
T  33436098 agagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattgccacctaagg 33436180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 33436313 - 33436229
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 85  Q
    ||||||| ||||||||||||   ||||   || ||||||||| |||||||||||||||| ||| ||| ||||| || ||||||||    
T  33436313 agagaaagtgtgcttgtgcaaagtccacatggtcacgtgtcagatttttatgtgggtgtcaaaaggtgtattgccatctaaggat 33436229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 45097733 - 45097836
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagga--tttatctatcataa 98  Q
    ||||||| ||| ||||||| || |||||  |||||| ||||| |||||| | ||||||| || || | ||||| ||||||||||  ||||| ||||||||    
T  45097733 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtatgggtgtcaagggatgtattgccacctaaggatgtttatgtatcataa 45097832  T
Q  99 ctct 102  Q
    ||||    
T  45097833 ctct 45097836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 24995105 - 24995187
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 83  Q
    ||||||||||||||||||| || |||| | | | ||||||||||||||||||||||||| ||||||| ||||| || ||||||    
T  24995105 agagaaaatgtgcttgtgcggggtccacgtgactacgtgtcaaatttttatgtgggtgtcaaagggtgtattgccatctaagg 24995187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 31910294 - 31910210
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 85  Q
    ||||||| ||||||||||| || |||||| ||| | |||||| |||||| ||||||||| |||| || |||||||||||||||||    
T  31910294 agagaaagtgtgcttgtgcggggtccatgtggctatgtgtcagatttttgtgtgggtgtcaaagagtgtattgtcacctaaggat 31910210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 55475293 - 55475190
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagga--tttatctatcataa 98  Q
    ||||||| ||| ||| |||||| |||||  |||||| ||||| |||||| ||||||||| ||||||| ||||| ||||||||||  ||||| ||||||||    
T  55475293 agagaaagtgtacttatgcagggtccatatggccacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtttatgtatcataa 55475194  T
Q  99 ctct 102  Q
    ||||    
T  55475193 ctct 55475190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 11511460 - 11511542
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 83  Q
    ||||||| ||||||||||| || |||| | | | |||||||| |||||||||||||||| ||||||| ||||| |||||||||    
T  11511460 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagg 11511542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 50052426 - 50052510
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 85  Q
    ||||||| ||||||||||| || |||| | | | |||||||| |||||| ||||||||| ||||||| ||||| |||||||||||    
T  50052426 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggat 50052510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 480445 - 480527
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 83  Q
    ||||||| ||||||||| | || |||| | | | |||||||| |||||| ||||||||| ||||||| |||||||||||||||    
T  480445 agagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagg 480527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 6034146 - 6034064
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 83  Q
    ||||||| ||||||||||| ||||||| | | | || ||||| |||||| ||||||||| ||||||| ||||| |||||||||    
T  6034146 agagaaagtgtgcttgtgcgggatccacgtgactacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagg 6034064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 40574881 - 40574797
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 85  Q
    ||||||| ||||||||| | |||||||||  ||  ||||||| |||||| ||||||||| ||||||| ||||  |||||||||||    
T  40574881 agagaaagtgtgcttgttcgggatccatgtagcagcgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggat 40574797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 41823984 - 41823920
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagg 65  Q
    ||||||| ||||||||||| || |||||| | | |||||||| |||||| |||||||||||||||    
T  41823984 agagaaagtgtgcttgtgcggggtccatgtgactacgtgtcagatttttgtgtgggtgttaaagg 41823920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 48647724 - 48647808
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaaggat 85  Q
    ||||||| ||||||||||| |  |||| | | |||||||| | |||||||||||||||||||  ||| |||||| ||||||||||    
T  48647724 agagaaattgtgcttgtgcggagtccacgtgaccacgtgttagatttttatgtgggtgttaagaggtgtattgttacctaaggat 48647808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 48183047 - 48183129
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagg 83  Q
    ||||||| ||||||||||| || |||| | | | |||||||| |||||| ||||||||| ||||||| ||||| ||| |||||    
T  48183047 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacgtaagg 48183129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 101
Target Start/End: Original strand, 8343191 - 8343263
Alignment:
Q  31 ggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagga--tttatctatcataactc 101  Q
    |||||| ||||| |||||||||| ||||| ||||| | ||||| ||||||||||  ||||| |||||||||||    
T  8343191 ggccacatgtcagatttttatgtaggtgtcaaaggatgtattgccacctaaggatgtttatgtatcataactc 8343263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 29547977 - 29548060
Alignment:
Q  21 ggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaagga--tttatctatcataactct 102  Q
    ||||||||  |||||| ||||| |||||| ||||||||| || || | ||||| ||||||||||  ||||| ||||||||||||    
T  29547977 ggatccatatggccacatgtcagatttttgtgtgggtgtcaagggatgtattgccacctaaggatgtttatgtatcataactct 29548060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1268 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 927 - 1007
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaa 81  Q
    ||||||| ||||||||||| |||| || | | | ||||||||  ||||| ||||| ||||||||||| ||||| |||||||    
T  927 agagaaagtgtgcttgtgcgggattcacgtgactacgtgtcagttttttgtgtggatgttaaagggtgtattgccacctaa 1007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1267 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 927 - 1007
Alignment:
Q  1 agagaaaatgtgcttgtgcaggatccatgcggccacgtgtcaaatttttatgtgggtgttaaagggtatattgtcacctaa 81  Q
    ||||||| ||||||||||| |||| || | | | ||||||||  ||||| ||||| ||||||||||| ||||| |||||||    
T  927 agagaaagtgtgcttgtgcgggattcacgtgactacgtgtcagttttttgtgtggatgttaaagggtgtattgccacctaa 1007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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