View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14644_low_17 (Length: 238)
Name: NF14644_low_17
Description: NF14644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14644_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 12 - 200
Target Start/End: Complemental strand, 32604336 - 32604146
Alignment:
| Q |
12 |
ttattctaatggttttgtggttgaaaagtttgataatttggttatatagaatgagtttaatgtgaattagagtggcaaacaaaccatgtag--ataactt |
109 |
Q |
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| T |
32604336 |
ttattctaatggttttgtggttgaaaagtttgataatttggttatatagaatgagtttaatgtgaattagagtggcaaac-atccatgttggaatacctt |
32604238 |
T |
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| Q |
110 |
actcatatttggttcaaacatccatgttgtaaaaatggttaaatcattgttatggaataac-ttgatatgaaagaactcagaaaaacaagta |
200 |
Q |
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| T |
32604237 |
actcatatttggttcaaacatccatgttgtaaaaatggttaaatcattgttatggaataactttgatatgaaagaactcagaaaaacaagta |
32604146 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 11811504 - 11811459
Alignment:
| Q |
97 |
atgtagataacttactcatatttggttcaaacatccatgttgtaaa |
142 |
Q |
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| T |
11811504 |
atgtagatgacttgctcacatttggttcaaagatccatgttgtaaa |
11811459 |
T |
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