View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14644_low_20 (Length: 211)
Name: NF14644_low_20
Description: NF14644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14644_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 32 - 196
Target Start/End: Original strand, 35434655 - 35434819
Alignment:
| Q |
32 |
tgcaaagtacactttcaaattacatctacttctttctatatctacaaattatatcacaaaacaaacactagattatagttggtttcccataatacacatt |
131 |
Q |
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| T |
35434655 |
tgcaaagtacactttcaaattacatatacttctttctatatctaaaaattatatcacaaaacaaacactagattatagttggtttccaataatacacatt |
35434754 |
T |
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| Q |
132 |
cactaactgcaaaatgagaactcattcccaattgctgttgtacttcatgctgtcaacaacagttg |
196 |
Q |
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| T |
35434755 |
cactaactgcaaaatgagaactcattcccaattgctgttgtacttcatgctgtcaacaacagttg |
35434819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 33 - 196
Target Start/End: Original strand, 35421311 - 35421474
Alignment:
| Q |
33 |
gcaaagtacactttcaaattacatctacttctttctatatctacaaattatatcacaaaacaaacactagattatagttggtttcccataatacacattc |
132 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
35421311 |
gcaaagtacactttcaaattacatatacttctttctatatctaaaaattatatcacaaaacaaacactagattatagttggtttccaataatacacattc |
35421410 |
T |
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| Q |
133 |
actaactgcaaaatgagaactcattcccaattgctgttgtacttcatgctgtcaacaacagttg |
196 |
Q |
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| T |
35421411 |
actaactgcaaaatgagaactcattcccaattgctgttgtacttcatgctgtcaacaacagttg |
35421474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 164
Target Start/End: Original strand, 35416884 - 35416963
Alignment:
| Q |
87 |
acaaaacaaacactagattat--agttggtttcccataatacacattcactaactgcaaaatgagaactcattcccaatt |
164 |
Q |
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|||| |||||||||||||||| ||||||||||| ||||| ||| |||||||||||||| || ||||||| |||||| |
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| T |
35416884 |
acaacacaaacactagattatctagttggtttccagtaatattaatttactaactgcaaaattaggactcatttccaatt |
35416963 |
T |
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