View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14644_low_6 (Length: 437)

Name: NF14644_low_6
Description: NF14644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14644_low_6
NF14644_low_6
[»] chr2 (21 HSPs)
chr2 (29-276)||(1590757-1591007)
chr2 (346-427)||(1590606-1590687)
chr2 (69-137)||(25979251-25979319)
chr2 (76-137)||(1777467-1777528)
chr2 (77-137)||(2412428-2412488)
chr2 (77-137)||(25977869-25977929)
chr2 (70-137)||(8809588-8809656)
chr2 (77-137)||(23861751-23861811)
chr2 (81-137)||(36837778-36837834)
chr2 (78-137)||(30844548-30844607)
chr2 (178-232)||(25977973-25978027)
chr2 (72-137)||(19604919-19604984)
chr2 (72-137)||(30843638-30843703)
chr2 (81-137)||(4040216-4040272)
chr2 (78-137)||(1778790-1778849)
chr2 (78-137)||(2411262-2411321)
chr2 (78-137)||(11088680-11088739)
chr2 (78-137)||(25283272-25283331)
chr2 (194-244)||(11087170-11087220)
chr2 (80-137)||(23863050-23863107)
chr2 (77-133)||(30215816-30215872)
[»] chr8 (32 HSPs)
chr8 (76-276)||(22534580-22534783)
chr8 (76-242)||(22533315-22533483)
chr8 (77-137)||(10717120-10717180)
chr8 (77-137)||(10718448-10718508)
chr8 (78-137)||(28997993-28998052)
chr8 (76-137)||(36588220-36588281)
chr8 (77-137)||(38456730-38456790)
chr8 (70-137)||(28996826-28996893)
chr8 (79-137)||(4182623-4182681)
chr8 (75-137)||(22272270-22272332)
chr8 (77-135)||(45517962-45518020)
chr8 (80-133)||(3483635-3483688)
chr8 (76-137)||(14197823-14197884)
chr8 (76-137)||(36589387-36589448)
chr8 (77-137)||(38658480-38658540)
chr8 (78-133)||(1420446-1420501)
chr8 (78-137)||(3031543-3031602)
chr8 (346-393)||(22534435-22534482)
chr8 (74-137)||(41354467-41354530)
chr8 (62-137)||(45516382-45516456)
chr8 (79-133)||(39440426-39440480)
chr8 (80-137)||(38455449-38455506)
chr8 (77-137)||(30124223-30124283)
chr8 (78-137)||(4183979-4184038)
chr8 (178-232)||(4183881-4183935)
chr8 (76-125)||(30123150-30123199)
chr8 (69-102)||(34213520-34213553)
chr8 (76-137)||(39439922-39439983)
chr8 (76-137)||(41357366-41357427)
chr8 (77-137)||(1376934-1376994)
chr8 (77-137)||(1385555-1385615)
chr8 (77-137)||(22270942-22271002)
[»] chr3 (42 HSPs)
chr3 (178-271)||(20585387-20585480)
chr3 (69-137)||(52401008-52401076)
chr3 (75-137)||(32635591-32635653)
chr3 (75-137)||(53121299-53121361)
chr3 (77-137)||(39820604-39820664)
chr3 (349-420)||(20585206-20585279)
chr3 (69-137)||(45267296-45267364)
chr3 (77-137)||(46026075-46026135)
chr3 (77-137)||(52403124-52403184)
chr3 (78-137)||(4705681-4705740)
chr3 (75-130)||(35639504-35639559)
chr3 (78-137)||(48033058-48033117)
chr3 (78-137)||(52708617-52708676)
chr3 (79-137)||(20489358-20489416)
chr3 (76-137)||(40477374-40477435)
chr3 (68-137)||(46027417-46027486)
chr3 (77-133)||(20585648-20585704)
chr3 (77-137)||(45268570-45268630)
chr3 (77-137)||(47433809-47433869)
chr3 (81-133)||(52707539-52707591)
chr3 (77-137)||(54437467-54437527)
chr3 (70-137)||(32637188-32637255)
chr3 (70-137)||(41780808-41780875)
chr3 (78-137)||(46104343-46104402)
chr3 (75-137)||(3416492-3416554)
chr3 (79-129)||(40476222-40476272)
chr3 (75-137)||(53122471-53122533)
chr3 (80-137)||(20488368-20488425)
chr3 (76-137)||(43734041-43734102)
chr3 (77-137)||(976779-976839)
chr3 (70-137)||(9855169-9855237)
chr3 (81-137)||(22508738-22508794)
chr3 (77-129)||(42446525-42446577)
chr3 (78-137)||(43641143-43641202)
chr3 (76-118)||(44507818-44507860)
chr3 (103-137)||(46106764-46106798)
chr3 (79-137)||(48035732-48035790)
chr3 (80-137)||(39819314-39819371)
chr3 (76-116)||(3417813-3417853)
chr3 (81-137)||(50562924-50562980)
chr3 (194-230)||(50563040-50563076)
chr3 (81-137)||(50563811-50563867)
[»] chr4 (34 HSPs)
chr4 (194-276)||(55542438-55542520)
chr4 (195-276)||(3879210-3879291)
chr4 (72-137)||(33137228-33137293)
chr4 (77-137)||(19674413-19674473)
chr4 (77-137)||(45619731-45619791)
chr4 (78-137)||(22204055-22204114)
chr4 (73-132)||(32699319-32699378)
chr4 (195-270)||(41933938-41934013)
chr4 (78-137)||(42359346-42359405)
chr4 (76-242)||(3880389-3880557)
chr4 (77-137)||(45618284-45618344)
chr4 (76-133)||(34659704-34659761)
chr4 (77-137)||(3879085-3879145)
chr4 (346-394)||(3879389-3879437)
chr4 (69-137)||(42358023-42358091)
chr4 (77-130)||(41933817-41933870)
chr4 (81-137)||(16574368-16574424)
chr4 (178-250)||(17371728-17371800)
chr4 (71-137)||(40198570-40198633)
chr4 (81-129)||(41935078-41935126)
chr4 (77-137)||(54121700-54121760)
chr4 (78-133)||(19675624-19675679)
chr4 (78-137)||(22205222-22205281)
chr4 (74-137)||(47359510-47359573)
chr4 (194-244)||(29060771-29060821)
chr4 (76-117)||(5259171-5259212)
chr4 (76-137)||(17281569-17281630)
chr4 (76-137)||(17370071-17370132)
chr4 (76-137)||(29060882-29060943)
chr4 (352-422)||(55541730-55541802)
chr4 (76-137)||(55542579-55542640)
chr4 (81-137)||(17371845-17371901)
chr4 (77-137)||(30091055-30091115)
chr4 (194-234)||(55541048-55541088)
[»] scaffold0562 (3 HSPs)
scaffold0562 (195-276)||(10046-10127)
scaffold0562 (77-137)||(9921-9981)
scaffold0562 (346-394)||(10225-10273)
[»] chr1 (38 HSPs)
chr1 (67-137)||(27262897-27262967)
chr1 (76-137)||(9774888-9774949)
chr1 (68-137)||(23469969-23470038)
chr1 (77-137)||(27264216-27264276)
chr1 (73-137)||(37395628-37395692)
chr1 (78-137)||(46075050-46075109)
chr1 (76-137)||(47038864-47038925)
chr1 (77-137)||(35721100-35721160)
chr1 (78-137)||(24609919-24609978)
chr1 (75-137)||(24611117-24611179)
chr1 (75-137)||(26863857-26863919)
chr1 (76-137)||(11710551-11710612)
chr1 (76-137)||(20723688-20723749)
chr1 (76-133)||(48588965-48589022)
chr1 (76-133)||(48594052-48594109)
chr1 (76-133)||(48598663-48598720)
chr1 (81-137)||(9774040-9774096)
chr1 (73-137)||(17977559-17977623)
chr1 (77-137)||(35722285-35722345)
chr1 (77-137)||(39163024-39163084)
chr1 (78-137)||(11711254-11711312)
chr1 (78-137)||(20722472-20722531)
chr1 (78-137)||(24427369-24427428)
chr1 (74-137)||(35911888-35911951)
chr1 (194-244)||(30722235-30722285)
chr1 (77-137)||(34934747-34934807)
chr1 (76-136)||(50164401-50164461)
chr1 (78-137)||(17976761-17976820)
chr1 (78-137)||(37396840-37396899)
chr1 (75-137)||(13074574-13074636)
chr1 (194-276)||(24422634-24422716)
chr1 (75-137)||(27815438-27815500)
chr1 (83-137)||(27816720-27816774)
chr1 (77-127)||(45979506-45979556)
chr1 (75-125)||(48857197-48857247)
chr1 (178-227)||(39162928-39162977)
chr1 (77-137)||(35910652-35910711)
chr1 (77-137)||(46073884-46073944)
[»] chr5 (15 HSPs)
chr5 (76-137)||(3936576-3936637)
chr5 (78-137)||(6894010-6894069)
chr5 (77-137)||(3954051-3954111)
chr5 (76-137)||(27571129-27571190)
chr5 (77-137)||(3938060-3938120)
chr5 (77-137)||(4565392-4565452)
chr5 (77-137)||(31540495-31540555)
chr5 (80-131)||(27570058-27570109)
chr5 (76-137)||(34911828-34911889)
chr5 (68-132)||(14809153-14809217)
chr5 (68-131)||(15599755-15599818)
chr5 (78-137)||(31541622-31541681)
chr5 (188-242)||(35605463-35605517)
chr5 (80-137)||(15604058-15604114)
chr5 (77-137)||(4777639-4777699)
[»] chr7 (35 HSPs)
chr7 (76-137)||(24195605-24195666)
chr7 (68-137)||(31848144-31848213)
chr7 (76-137)||(35212066-35212127)
chr7 (65-137)||(13418937-13419009)
chr7 (77-137)||(25046240-25046300)
chr7 (70-137)||(12385707-12385774)
chr7 (70-137)||(38742173-38742240)
chr7 (76-137)||(41693643-41693704)
chr7 (76-137)||(42254956-42255017)
chr7 (77-137)||(5611507-5611567)
chr7 (77-137)||(17066424-17066484)
chr7 (77-137)||(32197909-32197969)
chr7 (77-137)||(41694955-41695015)
chr7 (79-130)||(31489942-31489993)
chr7 (70-137)||(36749247-36749314)
chr7 (76-137)||(11217071-11217132)
chr7 (194-234)||(554362-554402)
chr7 (77-137)||(12933418-12933478)
chr7 (77-137)||(24197103-24197163)
chr7 (194-234)||(31489836-31489876)
chr7 (178-234)||(32543581-32543637)
chr7 (81-137)||(32544774-32544830)
chr7 (76-131)||(554243-554298)
chr7 (77-128)||(39619800-39619851)
chr7 (195-269)||(9454236-9454310)
chr7 (178-244)||(9454860-9454926)
chr7 (79-137)||(31853549-31853607)
chr7 (79-133)||(32196685-32196739)
chr7 (68-109)||(35837914-35837955)
chr7 (78-131)||(36748198-36748250)
chr7 (194-243)||(36748316-36748365)
chr7 (68-109)||(41053832-41053873)
chr7 (84-137)||(43869912-43869965)
chr7 (72-133)||(44568320-44568381)
chr7 (193-233)||(5610275-5610315)
[»] scaffold0517 (2 HSPs)
scaffold0517 (73-137)||(11522-11586)
scaffold0517 (78-137)||(10315-10374)
[»] chr6 (24 HSPs)
chr6 (69-133)||(29291350-29291414)
chr6 (77-137)||(17517309-17517369)
chr6 (77-137)||(34998141-34998201)
chr6 (70-133)||(1974156-1974219)
chr6 (78-137)||(18810532-18810591)
chr6 (78-137)||(21165246-21165305)
chr6 (76-137)||(16995449-16995510)
chr6 (77-137)||(21953205-21953265)
chr6 (62-133)||(17516147-17516217)
chr6 (78-137)||(20897497-20897556)
chr6 (178-232)||(17000179-17000233)
chr6 (77-137)||(3276366-3276426)
chr6 (69-109)||(14656229-14656269)
chr6 (78-137)||(1972400-1972459)
chr6 (192-251)||(26421726-26421785)
chr6 (67-129)||(30253547-30253609)
chr6 (76-133)||(1171655-1171712)
chr6 (194-231)||(3279403-3279440)
chr6 (76-137)||(3279499-3279560)
chr6 (76-137)||(20391212-20391273)
chr6 (80-137)||(25440673-25440730)
chr6 (76-137)||(26421843-26421904)
chr6 (69-109)||(12757601-12757641)
chr6 (77-137)||(34995113-34995173)
[»] scaffold0001 (2 HSPs)
scaffold0001 (72-137)||(120985-121050)
scaffold0001 (78-137)||(119593-119652)
[»] scaffold0106 (2 HSPs)
scaffold0106 (77-137)||(30907-30967)
scaffold0106 (77-137)||(29728-29788)
[»] scaffold0002 (5 HSPs)
scaffold0002 (77-137)||(345897-345957)
scaffold0002 (178-242)||(376261-376325)
scaffold0002 (77-137)||(344936-344996)
scaffold0002 (78-137)||(374335-374394)
scaffold0002 (77-125)||(376381-376429)
[»] scaffold0230 (1 HSPs)
scaffold0230 (78-137)||(431-490)
[»] scaffold0095 (1 HSPs)
scaffold0095 (79-133)||(42759-42813)
[»] scaffold0009 (2 HSPs)
scaffold0009 (195-249)||(202699-202753)
scaffold0009 (77-137)||(202578-202638)
[»] scaffold0765 (1 HSPs)
scaffold0765 (81-137)||(1863-1919)


Alignment Details
Target: chr2 (Bit Score: 134; Significance: 1e-69; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 29 - 276
Target Start/End: Complemental strand, 1591007 - 1590757
Alignment:
Q  29 gtgtattactttatcttatttgttttgaatgtgtttaatataaaaataaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggt 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  1591007 gtgtattactttatcttatttgttttgaatgtgtttaatataaaaataaggctaaaatatgtttttggtccttgaaaatataacgagtttagattttggt 1590908  T
Q  129 ccctggtaa---nnnnnnnngaatttcatccctgcaaaannnnnnnnnnnnnaaaaaagttcctgaatccactttcttgctgatttggctcatttttgct 225  Q
    | ||| |||            ||||||||||||||||||             |||||||| |||||||||||||||||| |||||||||||||||||| |    
T  1590907 ctctgataattttttttttttaatttcatccctgcaaaattttttgttttttaaaaaagtccctgaatccactttcttgttgatttggctcatttttgtt 1590808  T
Q  226 tatgtggcaagtgctgactatacaaatttgtatacatggcatctaggtggc 276  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  1590807 tatgtggcaagtgctgactatacaaatttgtatacatggtatctagatggc 1590757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 346 - 427
Target Start/End: Complemental strand, 1590687 - 1590606
Alignment:
Q  346 ctatgtgaaatcaattaatcatgtcttctttagcaacatgtttgttcatgagagaacaagcatcctaaacttccaccctttg 427  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1590687 ctatgtgaaatcaattaatcatgtcttctttagcaacatgtttgttcatgagagaacaagcatcctaaacttccaccctttg 1590606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 69 - 137
Target Start/End: Complemental strand, 25979319 - 25979251
Alignment:
Q  69 taaaaataaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||| ||||||||||||||||||||||||| || ||||||||||| ||| ||||||||||||||||||    
T  25979319 taaaattaaggctaaaatatgtttttggtccctgcaaatatagcgaatttgggttttggtccctggtaa 25979251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 1777467 - 1777528
Alignment:
Q  76 aaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||||||||||||||| || |||||||||||||||  |||||||||||||||||    
T  1777467 aaggctaaaatatgtttttggtccctgcaaatatagcgagtttgagttttggtccctggtaa 1777528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 2412488 - 2412428
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||||||||||||| || ||||||||||||||| |||||| |||||||||||    
T  2412488 aggctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttagtccctggtaa 2412428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 25977869 - 25977929
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||||||||||||| || |||||||| |||||| ||||||||||||||||||    
T  25977869 aggctaaaatatgtttttggtccctgcaaatatagtgagtttgggttttggtccctggtaa 25977929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 70 - 137
Target Start/End: Original strand, 8809588 - 8809656
Alignment:
Q  70 aaaaataaggctaaaatatgtttttggt-ccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||| |||||||||||||||||||||| ||||| ||||||| ||| ||| ||||||||||||||||||    
T  8809588 aaaaaaaaggctaaaatatgtttttggtcccttgcaaatataacgaatttgggttttggtccctggtaa 8809656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 23861751 - 23861811
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||||||||||||| || |||||| | |||||| | ||||||||||||||||    
T  23861751 aggctaaaatatgtttttggtccctgcaaatatggagagtttggattttggtccctggtaa 23861811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 36837834 - 36837778
Alignment:
Q  81 taaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||| |||||||||  || ||||||||||||||| ||||||||||||||||||    
T  36837834 taaaatatatttttggtctctgcaaatatagcgagtttgggttttggtccctggtaa 36837778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 30844607 - 30844548
Alignment:
Q  78 ggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||||||||||||||| ||||||| ||||||  ||||| |||| |||||||    
T  30844607 ggctaaaatatgtttttggtccttgcaaatataacgagttcgggtttcggtctctggtaa 30844548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 25977973 - 25978027
Alignment:
Q  178 aaaaaagttcctgaatccactttcttgctgatttggctcatttttgcttatgtgg 232  Q
    |||||||| |||| | ||||||||||||||||||||| |||||||||||| ||||    
T  25977973 aaaaaagtccctggacccactttcttgctgatttggcacatttttgcttaggtgg 25978027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 137
Target Start/End: Complemental strand, 19604984 - 19604919
Alignment:
Q  72 aaataaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||| |||||||||||||||||||||| || |||||| ||   ||| ||||||||||||||||||    
T  19604984 aaatatggctaaaatatgtttttggtccctgtaaatatggctcatttgggttttggtccctggtaa 19604919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 137
Target Start/End: Original strand, 30843638 - 30843703
Alignment:
Q  72 aaataaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||||||||| ||||  ||  || ||||||| ||||||| ||||||||||||||||||    
T  30843638 aaataaggctaaaatatgcttttaatcactgcaaatataacgagtttgggttttggtccctggtaa 30843703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 4040272 - 4040216
Alignment:
Q  81 taaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||| ||||||||| || |||||||| || ||||||||||| ||||||||||    
T  4040272 taaaatatgattttggtccctgcaaatatagagaatttaggttttgctccctggtaa 4040216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 1778849 - 1778790
Alignment:
Q  78 ggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||| ||||||| | || ||||||||||| ||| ||||||||||| ||||||    
T  1778849 ggctaaaatatgcttttggttcctgcaaatatagcgactttgggttttggtccttggtaa 1778790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 2411262 - 2411321
Alignment:
Q  78 ggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||| |||| |||| || |||||||| |||| || |||||||||||||||||    
T  2411262 ggctaaaatatgcttttagtccctgcaaatatagagagtgtaagttttggtccctggtaa 2411321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 11088739 - 11088680
Alignment:
Q  78 ggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||||||| |||| || ||||||||||| |||  |||||||| ||||||||    
T  11088739 ggctaaaatatgtttttcgtccatgcaaatatagcgaatttgagttttggttcctggtaa 11088680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 25283331 - 25283272
Alignment:
Q  78 ggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||||||||||||  || ||||||||||| |||  |||||| ||||||||||    
T  25283331 ggctaaaatatgtttttggtcactgcaaatatagcgaatttgagttttgatccctggtaa 25283272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 11087170 - 11087220
Alignment:
Q  194 ccactttcttgctgatttggctcatttttgcttatgtggcaagtgctgact 244  Q
    ||||||||||||||||||| ||||||||||| |  ||||||| ||||||||    
T  11087170 ccactttcttgctgatttgtctcatttttgcctgcgtggcaaatgctgact 11087220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 23863107 - 23863050
Alignment:
Q  80 ctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||||||||||  || |||||| |||||||| ||||||| ||||| ||||    
T  23863107 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttgatccctagtaa 23863050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 30215872 - 30215816
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctg 133  Q
    ||||||||||||| ||||||||| || ||||||| || |||| |||||| |||||||    
T  30215872 aggctaaaatatggttttggtccctgcaaatatatcgcgttttggttttagtccctg 30215816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 76 - 276
Target Start/End: Complemental strand, 22534783 - 22534580
Alignment:
Q  76 aaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaannnnnnnn---gaatttcatccctgcaaaannnnnnnn 172  Q
    |||||||||||||| ||||| ||| || ||||||||||||||| ||||||||||||||||||           |||||||| ||||||||||            
T  22534783 aaggctaaaatatgcttttgatccctgcaaatatagcgagtttgggttttggtccctggtaaaatttttttttgaatttcaaccctgcaaaattttttgt 22534684  T
Q  173 nnnnnaaaaaagttcctgaatccactttcttgctgatttggctcatttttgcttatgtggcaagtgctgactatacaaatttgtatacatggcatctagg 272  Q
         |||||||| | || | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||| ||||    
T  22534683 tttttaaaaaagtccttggacccactttcttgctgatttggctcatttttgcttatgtggcaagtgctgactgtacaaacttgtatacattgcatttagg 22534584  T
Q  273 tggc 276  Q
    ||||    
T  22534583 tggc 22534580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 76 - 242
Target Start/End: Original strand, 22533315 - 22533483
Alignment:
Q  76 aaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaannnnnnnn---gaatttcatccctgcaaaannnnnnnn 172  Q
    |||||||||||||| ||||||||| || | ||||||||||||| ||||||||||||||||||           |||||||||||||||||||            
T  22533315 aaggctaaaatatgcttttggtccctgtatatatagcgagtttgggttttggtccctggtaaaaaaaatttttgaatttcatccctgcaaaatttttgtt 22533414  T
Q  173 nnnnnaaaaaagttcctgaatccactttcttgctgatttggctcatttttgcttatgtggcaagtgctga 242  Q
         |||||||| |||| ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  22533415 tttt-aaaaaagtccctggatccactttcttgctgatttgactcattgttgcttatgtggcaggtgctga 22533483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 10717120 - 10717180
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||| ||||||||| || ||||||||||||||| ||||||||||||||||||    
T  10717120 aggctaaaatatgcttttggtccctgcaaatatagcgagtttgggttttggtccctggtaa 10717180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 10718508 - 10718448
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||| ||||||||| || ||||||||||||||| ||||||||||||||||||    
T  10718508 aggctaaaatatgcttttggtccctgcaaatatagcgagtttgggttttggtccctggtaa 10718448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 28998052 - 28997993
Alignment:
Q  78 ggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||||||||||||| || ||||||||||||||| ||||||||||||| ||||    
T  28998052 ggctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttggtccctagtaa 28997993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 36588220 - 36588281
Alignment:
Q  76 aaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||||| ||||||||| || |||||||||||||||  |||||||||||||||||    
T  36588220 aaggctaaaatatgcttttggtccctgcaaatatagcgagtttgcgttttggtccctggtaa 36588281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 38456790 - 38456730
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||| ||||||||| || ||||||||| | ||||||||||||||||||||||    
T  38456790 aggctaaaatatgcttttggtccctgcaaatatagcaaatttaggttttggtccctggtaa 38456730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 137
Target Start/End: Original strand, 28996826 - 28996893
Alignment:
Q  70 aaaaataaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||| || ||||||||||| ||||||||| || |||||||| |||||| ||||||||||||||||||    
T  28996826 aaaaaaaatgctaaaatatgattttggtccctgcaaatatagtgagtttgggttttggtccctggtaa 28996893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 79 - 137
Target Start/End: Original strand, 4182623 - 4182681
Alignment:
Q  79 gctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||| ||||||||| || ||||||||||| ||| ||||||||||||||||||    
T  4182623 gctaaaatatgcttttggtccctgtaaatatagcgaatttgggttttggtccctggtaa 4182681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 75 - 137
Target Start/End: Complemental strand, 22272332 - 22272270
Alignment:
Q  75 taaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||||| |||||||||  | ||||||||||| ||| ||||||||||||||||||    
T  22272332 taaggctaaaatatgcttttggtccccgcaaatatagcgaatttgggttttggtccctggtaa 22272270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 77 - 135
Target Start/End: Complemental strand, 45518020 - 45517962
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggt 135  Q
    ||||||||||||| ||||||||| || || |||||||||||| ||||||||||||||||    
T  45518020 aggctaaaatatgcttttggtccctgcaagtatagcgagtttgggttttggtccctggt 45517962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 3483635 - 3483688
Alignment:
Q  80 ctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctg 133  Q
    |||||||||||||||||||| || |||||||||||||||  |||||||||||||    
T  3483635 ctaaaatatgtttttggtccctgcaaatatagcgagtttgagttttggtccctg 3483688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 14197823 - 14197884
Alignment:
Q  76 aaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||||||||||||||| || |||||| |||||||| | ||||||||||| ||||    
T  14197823 aaggctaaaatatgtttttggtccctgcaaatatggcgagtttggattttggtccctagtaa 14197884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 36589448 - 36589387
Alignment:
Q  76 aaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||||| |||| || | || ||||||||||||||||||||||||||| ||||||    
T  36589448 aaggctaaaatatgattttagttcctgcaaatatagcgagtttaggttttggtccttggtaa 36589387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 38658480 - 38658540
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||| || |||||| || ||||||||||| ||| ||||||||||||||||||    
T  38658480 aggctaaaatatgcttctggtccatgcaaatatagcgaatttgggttttggtccctggtaa 38658540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 133
Target Start/End: Complemental strand, 1420501 - 1420446
Alignment:
Q  78 ggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctg 133  Q
    |||||||||||||||||||||| || ||||||||||||||| | | ||||||||||    
T  1420501 ggctaaaatatgtttttggtccctgcaaatatagcgagtttggatattggtccctg 1420446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 3031602 - 3031543
Alignment:
Q  78 ggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||||||||||||| || |||||| ||   ||||||||||||||||||||||    
T  3031602 ggctaaaatatgtttttggtccctgtaaatatggctcatttaggttttggtccctggtaa 3031543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 346 - 393
Target Start/End: Complemental strand, 22534482 - 22534435
Alignment:
Q  346 ctatgtgaaatcaattaatcatgtcttctttagcaacatgtttgttca 393  Q
    |||||||||||||||||||||| ||||||||| ||| |||||||||||    
T  22534482 ctatgtgaaatcaattaatcatctcttctttaccaatatgtttgttca 22534435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 137
Target Start/End: Original strand, 41354467 - 41354530
Alignment:
Q  74 ataaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||| |||||||||||||||||||||||  |||||||||||||||   ||||||| ||||||||    
T  41354467 ataaagctaaaatatgtttttggtccttataaatatagcgagtttgaattttggttcctggtaa 41354530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 62 - 137
Target Start/End: Original strand, 45516382 - 45516456
Alignment:
Q  62 tttaatataaaaataaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||| ||| ||| ||||||||||||||| |||| || ||||||||||| ||| |||||||||| |||||||    
T  45516382 tttaatatataaa-aagactaaaatatgtttttagtccatgtaaatatagcgaatttgggttttggtctctggtaa 45516456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 133
Target Start/End: Complemental strand, 39440480 - 39440426
Alignment:
Q  79 gctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctg 133  Q
    ||||||||||| |||||||||||| |||||| ||||||||  |||||||||||||    
T  39440480 gctaaaatatgcttttggtccttgcaaatatggcgagtttgagttttggtccctg 39440426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 38455449 - 38455506
Alignment:
Q  80 ctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||||||||||||| |||||||| || |||  |||||||||||| ||||    
T  38455449 ctaaaatatgtttttggtccttgcaaatatagtgaatttgagttttggtccctagtaa 38455506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 30124283 - 30124223
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||| ||||||||| || ||||| ||| |||||  |||||||||||||||||    
T  30124283 aggctaaaatatgcttttggtccctgcaaataaagcaagtttgagttttggtccctggtaa 30124223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 4184038 - 4183979
Alignment:
Q  78 ggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||| |||| |||| || |||||||| | |||| ||||||||||||||||||    
T  4184038 ggctaaaatatgcttttagtccctgcaaatatagtgcgtttgggttttggtccctggtaa 4183979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 232
Target Start/End: Complemental strand, 4183935 - 4183881
Alignment:
Q  178 aaaaaagttcctgaatccactttcttgctgatttggctcatttttgcttatgtgg 232  Q
    |||||||| |||| | ||||||||||||| ||||||| |||||||||||| ||||    
T  4183935 aaaaaagtccctggacccactttcttgctaatttggcacatttttgcttaggtgg 4183881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 30123150 - 30123199
Alignment:
Q  76 aaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggtttt 125  Q
    |||||||||||||||||||||||| |  ||||||||||| ||| ||||||    
T  30123150 aaggctaaaatatgtttttggtccatacaaatatagcgaatttgggtttt 30123199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 102
Target Start/End: Complemental strand, 34213553 - 34213520
Alignment:
Q  69 taaaaataaggctaaaatatgtttttggtccttg 102  Q
    ||||||||||||||||||||| ||||||||||||    
T  34213553 taaaaataaggctaaaatatggttttggtccttg 34213520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 39439922 - 39439983
Alignment:
Q  76 aaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||||| ||||||||| || |||||| || |||||  ||||||| |||||||||    
T  39439922 aaggctaaaatatgattttggtccctgcaaatatggctagtttgagttttggaccctggtaa 39439983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 41357427 - 41357366
Alignment:
Q  76 aaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||| |||||||||||||||||||| | |||||| | |||||| |||||||||  |||||||    
T  41357427 aaggttaaaatatgtttttggtcctcgcaaatatggtgagtttgggttttggtttctggtaa 41357366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 1376934 - 1376994
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||| ||||||| ||||||||| || ||||||||| | ||| | ||||||||||||||||    
T  1376934 aggcttaaatatgattttggtccctgcaaatatagccaatttggattttggtccctggtaa 1376994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 1385615 - 1385555
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||| ||||||| ||||||||| || ||||||||| | ||| | ||||||||||||||||    
T  1385615 aggcttaaatatggttttggtccctgcaaatatagccaatttggattttggtccctggtaa 1385555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 22270942 - 22271002
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||| ||||| ||| || ||||||||||| ||| | |||| |||||||||||    
T  22270942 aggctaaaatatgcttttgatccctgcaaatatagcgaatttggattttagtccctggtaa 22271002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 178 - 271
Target Start/End: Complemental strand, 20585480 - 20585387
Alignment:
Q  178 aaaaaagttcctgaatccactttcttgctgatttggctcatttttgcttatgtggcaagtgctgactatacaaatttgtatacatggcatctag 271  Q
    ||||| || |||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||    
T  20585480 aaaaaggtccctgaacccactttcttgctgatttgactcatttttgcttatgtggcatgtgctgactgtacaaacttgtatacatggcatctag 20585387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 69 - 137
Target Start/End: Original strand, 52401008 - 52401076
Alignment:
Q  69 taaaaataaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||| ||||||||||||||||||||||||| || |||||| |||||||| ||||||||||||||||||    
T  52401008 taaaattaaggctaaaatatgtttttggtccctgcaaatatggcgagtttgggttttggtccctggtaa 52401076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 32635591 - 32635653
Alignment:
Q  75 taaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||||| ||||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  32635591 taaggctaaaatatattttttgtccttgtaaatatagcgagtttgggttttggtccctggtaa 32635653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 53121299 - 53121361
Alignment:
Q  75 taaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||||||||||||||| || ||||||||||||||| |||||| |||||||||||    
T  53121299 taaggctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttagtccctggtaa 53121361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 39820664 - 39820604
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||| ||||||||| || ||||||||||||||| ||||||||||||||||||    
T  39820664 aggctaaaatatggttttggtccctgcaaatatagcgagtttgggttttggtccctggtaa 39820604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 349 - 420
Target Start/End: Complemental strand, 20585279 - 20585206
Alignment:
Q  349 tgtgaaatcaattaatcatgtcttctttagcaacatgtttgttcatgag--agaacaagcatcctaaacttcca 420  Q
    |||||||||||||||||||||| ||||||  ||||||||||||||| ||  |||||||||||||||| ||||||    
T  20585279 tgtgaaatcaattaatcatgtcatctttacgaacatgtttgttcatcagcaagaacaagcatcctaatcttcca 20585206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 69 - 137
Target Start/End: Original strand, 45267296 - 45267364
Alignment:
Q  69 taaaaataaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||| || ||||||||||||||||| ||| || |||||||||||||||  |||||||||||||||||    
T  45267296 taaaaaaaaagctaaaatatgtttttgatccctgcaaatatagcgagtttgagttttggtccctggtaa 45267364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 46026075 - 46026135
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||||||||||||| || ||||||||||||||| | ||||||||||| ||||    
T  46026075 aggctaaaatatgtttttggtccctgcaaatatagcgagtttggattttggtccctagtaa 46026135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 52403184 - 52403124
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||| ||||||||| || |||||| |||||||| ||||||||||||||||||    
T  52403184 aggctaaaatatgcttttggtccctgcaaatatggcgagtttgggttttggtccctggtaa 52403124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 4705681 - 4705740
Alignment:
Q  78 ggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||| ||||| ||| || |||||| |||||||||||||||||||||||||||    
T  4705681 ggctaaaatatgcttttgatccctgcaaatatggcgagtttaggttttggtccctggtaa 4705740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 35639504 - 35639559
Alignment:
Q  75 taaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtcc 130  Q
    ||||||||||||||| |||||||||||||||||||||| |||||  ||||||||||    
T  35639504 taaggctaaaatatgcttttggtccttgaaaatatagcaagtttgagttttggtcc 35639559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 48033058 - 48033117
Alignment:
Q  78 ggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||||||||||||||| |||||| | |||||| | ||||||||||||||||    
T  48033058 ggctaaaatatgtttttggtccttgcaaatatggtgagtttggattttggtccctggtaa 48033117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 52708676 - 52708617
Alignment:
Q  78 ggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||| ||||||||| || ||||||||||||||| |||||||||| |||||||    
T  52708676 ggctaaaatatgcttttggtccctgcaaatatagcgagtttgggttttggtctctggtaa 52708617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 79 - 137
Target Start/End: Complemental strand, 20489416 - 20489358
Alignment:
Q  79 gctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||||||||||| || ||||||  ||||||| ||||||||||||||||||    
T  20489416 gctaaaatatgtttttggtccctgcaaatatgacgagtttgggttttggtccctggtaa 20489358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 40477435 - 40477374
Alignment:
Q  76 aaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||||| ||||||||| || ||||||| ||||||| ||||||||||||| ||||    
T  40477435 aaggctaaaatatgattttggtccctgcaaatataacgagtttgggttttggtccctagtaa 40477374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 137
Target Start/End: Complemental strand, 46027486 - 46027417
Alignment:
Q  68 ataaaaataaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||| |||||||||||||  ||||||||| || |||||||||||||||   ||||||||||||||||    
T  46027486 ataaaaagaaggctaaaatatacttttggtccctgcaaatatagcgagtttgaattttggtccctggtaa 46027417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 20585704 - 20585648
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctg 133  Q
    ||||||||||||||||||| ||| || ||||||||||||||| | ||||||||||||    
T  20585704 aggctaaaatatgtttttgatccctgcaaatatagcgagtttggattttggtccctg 20585648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 45268630 - 45268570
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||||||||  ||| || ||||||||| ||||| ||||||||||||||||||    
T  45268630 aggctaaaatatgtttttaatccctgcaaatatagcaagtttgggttttggtccctggtaa 45268570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 47433869 - 47433809
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||| ||||||||| || ||||||||||| |||  |||||||||||||||||    
T  47433869 aggctaaaatatggttttggtccctgcaaatatagcgaatttgagttttggtccctggtaa 47433809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 52707539 - 52707591
Alignment:
Q  81 taaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctg 133  Q
    |||||||||||||||||||||| ||||||||||| |||  |||||||||||||    
T  52707539 taaaatatgtttttggtccttgcaaatatagcgaatttgagttttggtccctg 52707591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 54437527 - 54437467
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||||||||||||| || ||||||||||| |||  |||||||||||| ||||    
T  54437527 aggctaaaatatgtttttggtccctgcaaatatagcgaatttgagttttggtccctagtaa 54437467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 137
Target Start/End: Complemental strand, 32637255 - 32637188
Alignment:
Q  70 aaaaataaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||| || ||||||||||| ||||||||| || |||| |||||||||| ||||||||| ||||||||    
T  32637255 aaaaaaaatgctaaaatatgcttttggtccctgtaaatgtagcgagtttgggttttggttcctggtaa 32637188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 137
Target Start/End: Complemental strand, 41780875 - 41780808
Alignment:
Q  70 aaaaataaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||| |||||||||||||||||||| ||| | |||||||||| ||||| ||||| ||||||| ||||    
T  41780875 aaaaaaaaggctaaaatatgtttttgatccctaaaaatatagcaagtttgggtttcggtccctagtaa 41780808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 46104343 - 46104402
Alignment:
Q  78 ggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||| ||||||||| || |||||||||||||||  ||||| |||||||||||    
T  46104343 ggctaaaatatgattttggtccctgcaaatatagcgagtttgagtttttgtccctggtaa 46104402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 3416492 - 3416554
Alignment:
Q  75 taaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||||| ||||| ||| || ||||||||| ||||| | ||||||||||||||||    
T  3416492 taaggctaaaatatgattttgatccctgtaaatatagcaagtttggtttttggtccctggtaa 3416554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 129
Target Start/End: Original strand, 40476222 - 40476272
Alignment:
Q  79 gctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtc 129  Q
    ||||||||||||||||||||| || ||||||||||||||| | ||||||||    
T  40476222 gctaaaatatgtttttggtccctgcaaatatagcgagtttggattttggtc 40476272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 137
Target Start/End: Complemental strand, 53122533 - 53122471
Alignment:
Q  75 taaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||||| |||| |||| || |||||||| |||| || |||||||||||||||||    
T  53122533 taaggctaaaatatgcttttagtccctgcaaatatagagagtgtaagttttggtccctggtaa 53122471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 20488368 - 20488425
Alignment:
Q  80 ctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||||||||||| || |||||| | || ||| ||||||||||||||||||    
T  20488368 ctaaaatatgtttttggtccctgcaaatatggtgaatttgggttttggtccctggtaa 20488425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 43734102 - 43734041
Alignment:
Q  76 aaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||||  |||||| |||| ||||||||| ||||| |||||||||| |||||||    
T  43734102 aaggctaaaatatgcgtttggttcttgcaaatatagcaagtttgggttttggtctctggtaa 43734041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 976779 - 976839
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||| ||||| ||| || ||||||||||| |||| ||||| |||||||||||    
T  976779 aggctaaaatatgcttttgatccctgcaaatatagcgaatttaagttttagtccctggtaa 976839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 137
Target Start/End: Original strand, 9855169 - 9855237
Alignment:
Q  70 aaaaataa-ggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||| |||||||||||| ||||| ||| || ||||||||||||||| | ||||||||||| ||||    
T  9855169 aaaaataatggctaaaatatgattttgatccctgtaaatatagcgagtttggattttggtccctagtaa 9855237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 22508738 - 22508794
Alignment:
Q  81 taaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||| ||||||||| || |||||||||||||||  |||||||||| ||||||    
T  22508738 taaaatatgattttggtccctgcaaatatagcgagtttgagttttggtccttggtaa 22508794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 129
Target Start/End: Original strand, 42446525 - 42446577
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtc 129  Q
    ||||||||||||| ||||||||| || |||||| |||||||| ||||||||||    
T  42446525 aggctaaaatatgcttttggtccctgcaaatatggcgagtttgggttttggtc 42446577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 43641143 - 43641202
Alignment:
Q  78 ggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||| |||| |||| || ||||||||||||||| | || |||||||||||||    
T  43641143 ggctaaaatatgcttttagtccctgcaaatatagcgagtttggattatggtccctggtaa 43641202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 118
Target Start/End: Complemental strand, 44507860 - 44507818
Alignment:
Q  76 aaggctaaaatatgtttttggtccttgaaaatatagcgagttt 118  Q
    |||||||||||||| ||||||||| || |||||||||||||||    
T  44507860 aaggctaaaatatgattttggtccctgcaaatatagcgagttt 44507818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 137
Target Start/End: Complemental strand, 46106798 - 46106764
Alignment:
Q  103 aaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||||||| ||||||||||||||||||    
T  46106798 aaaatatagcgagtttgggttttggtccctggtaa 46106764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 137
Target Start/End: Complemental strand, 48035790 - 48035732
Alignment:
Q  79 gctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||||||| ||| || ||||||  ||||||| | ||||||||||||||||    
T  48035790 gctaaaatatgtttttgatccctgcaaatatgacgagtttggattttggtccctggtaa 48035732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 39819314 - 39819371
Alignment:
Q  80 ctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||| |||| |||| || |||||||||||||||   ||||||||||||||||    
T  39819314 ctaaaatatggttttagtccctgcaaatatagcgagtttgaattttggtccctggtaa 39819371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 3417853 - 3417813
Alignment:
Q  76 aaggctaaaatatgtttttggtccttgaaaatatagcgagt 116  Q
    |||||||||||||||||||||||| || |||||| ||||||    
T  3417853 aaggctaaaatatgtttttggtccctgtaaatatggcgagt 3417813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 50562924 - 50562980
Alignment:
Q  81 taaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||||||||| |  ||||||||  ||||||||||||||| | ||||||    
T  50562924 taaaatatgtttttggtccctacaaatatagtaagtttaggttttggttcttggtaa 50562980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 50563040 - 50563076
Alignment:
Q  194 ccactttcttgctgatttggctcatttttgcttatgt 230  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  50563040 ccactttcttgttgatttggcacatttttgcttatgt 50563076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 50563867 - 50563811
Alignment:
Q  81 taaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||||| |||  |||||||||| ||||||| | |||||||| |||||||    
T  50563867 taaaatatgtttttagtctctgaaaatataacgagtttggattttggtcgctggtaa 50563811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 194 - 276
Target Start/End: Complemental strand, 55542520 - 55542438
Alignment:
Q  194 ccactttcttgctgatttggctcatttttgcttatgtggcaagtgctgactatacaaatttgtatacatggcatctaggtggc 276  Q
    ||||||||||| ||||||| ||||||||||||| ||| ||||||||||||  |||||| ||||||||||||||||||||||||    
T  55542520 ccactttcttgttgatttgactcatttttgcttttgttgcaagtgctgaccgtacaaacttgtatacatggcatctaggtggc 55542438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 195 - 276
Target Start/End: Original strand, 3879210 - 3879291
Alignment:
Q  195 cactttcttgctgatttggctcatttttgcttatgtggcaagtgctgactatacaaatttgtatacatggcatctaggtggc 276  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| || || ||| |||||||||| |||| ||||||||    
T  3879210 cactttcttgctgatttggctcatttttgcttatgtgccaagtgctggctgtataaaattgtatacattgcatttaggtggc 3879291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 72 - 137
Target Start/End: Complemental strand, 33137293 - 33137228
Alignment:
Q  72 aaataaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||||||||||||||| ||| || ||||||||||||||| |||||| |||||||||||    
T  33137293 aaataaggctaaaatatgtttttgatccctgcaaatatagcgagtttgggttttagtccctggtaa 33137228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 19674413 - 19674473
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||| |||||||||||| |||||||||||||||  |||||||||||||||||    
T  19674413 aggctaaaatatgcttttggtccttgcaaatatagcgagtttgagttttggtccctggtaa 19674473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 45619791 - 45619731
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||||||||| |||| || ||||||||||||||||||||||| ||||||||||    
T  45619791 aggctaaaatatgtttttagtccctgcaaatatagcgagtttaggttttgttccctggtaa 45619731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 22204055 - 22204114
Alignment:
Q  78 ggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||||||||||||| || ||||||||||||||| |||||| |||||||||||    
T  22204055 ggctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttagtccctggtaa 22204114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 73 - 132
Target Start/End: Complemental strand, 32699378 - 32699319
Alignment:
Q  73 aataaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccct 132  Q
    |||| |||||||||||||||||||||| || ||||||||||||||| |||||||||||||    
T  32699378 aatatggctaaaatatgtttttggtccctgtaaatatagcgagtttgggttttggtccct 32699319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 195 - 270
Target Start/End: Original strand, 41933938 - 41934013
Alignment:
Q  195 cactttcttgctgatttggctcatttttgcttatgtggcaagtgctgactatacaaatttgtatacatggcatcta 270  Q
    ||||||||||||||| |||||||||||||||||||||||| ||| ||||  | |||| |||||||| |||||||||    
T  41933938 cactttcttgctgatgtggctcatttttgcttatgtggcaggtgttgaccgttcaaacttgtatacgtggcatcta 41934013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 42359405 - 42359346
Alignment:
Q  78 ggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||||||||||||| || ||||||||||||||| | ||||||||||||||||    
T  42359405 ggctaaaatatgtttttggtccctgcaaatatagcgagtttggattttggtccctggtaa 42359346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 76 - 242
Target Start/End: Complemental strand, 3880557 - 3880389
Alignment:
Q  76 aaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggt--aannnnnnnngaatttcatccctgcaaaannnnnnnnn 173  Q
    |||||||||||||||||||||| | || ||||||||||||||| ||||||||||||| ||  ||        |||||| ||||||||||||             
T  3880557 aaggctaaaatatgtttttggttcctgcaaatatagcgagtttgggttttggtccctagtaaaaaaaaaattgaattttatccctgcaaaaaattttgtt 3880458  T
Q  174 nnnnaaaaaagttcctgaatccactttcttgctgatttggctcatttttgcttatgtggcaagtgctga 242  Q
        |||||||| |||| | ||| |||||| ||||||||||||||| |||||||||||||| |||||||    
T  3880457 ttttaaaaaagtccctggacccattttcttactgatttggctcattgttgcttatgtggcaggtgctga 3880389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 45618284 - 45618344
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||| ||||| ||||||||| || ||||||||||||||| ||||||||||||||||||    
T  45618284 aggctaatatatgcttttggtccctgcaaatatagcgagtttgggttttggtccctggtaa 45618344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 133
Target Start/End: Original strand, 34659704 - 34659761
Alignment:
Q  76 aaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctg 133  Q
    |||||||||||||| ||||||||| || |||||| ||||||| |||||||||||||||    
T  34659704 aaggctaaaatatgcttttggtccctgcaaatatggcgagttaaggttttggtccctg 34659761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 3879085 - 3879145
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||| ||||| ||| || ||||||||||||||| | ||||||||||||||||    
T  3879085 aggctaaaatatgcttttgatccctgcaaatatagcgagtttggattttggtccctggtaa 3879145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 394
Target Start/End: Original strand, 3879389 - 3879437
Alignment:
Q  346 ctatgtgaaatcaattaatcatgtcttctttagcaacatgtttgttcat 394  Q
    |||||||||||||||||||||| ||||||||| ||| ||||||||||||    
T  3879389 ctatgtgaaatcaattaatcatctcttctttaccaatatgtttgttcat 3879437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 137
Target Start/End: Original strand, 42358023 - 42358091
Alignment:
Q  69 taaaaataaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||| |||||||||||||||||||||||| || ||||||||  |||||  |||||| ||||||||||    
T  42358023 taaaaaaaaggctaaaatatgtttttggtccctgcaaatataggaagtttgagttttgatccctggtaa 42358091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 77 - 130
Target Start/End: Original strand, 41933817 - 41933870
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtcc 130  Q
    ||||||||||||| ||||||||  || ||||||||||||||| |||||||||||    
T  41933817 aggctaaaatatgattttggtctctgcaaatatagcgagtttgggttttggtcc 41933870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 16574424 - 16574368
Alignment:
Q  81 taaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||||| |||| || ||||||||||| |||| |||||||||||| ||||    
T  16574424 taaaatatgtttttagtccctgcaaatatagcgaatttaagttttggtcccttgtaa 16574368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 17371800 - 17371728
Alignment:
Q  178 aaaaaagttcctgaatccactttcttgctgatttggctcatttttgcttatgtggcaagtgctgactatacaa 250  Q
    |||||||| | || ||||||||||||||||||||| | |||||| | ||| ||||||| |||||||| |||||    
T  17371800 aaaaaagtccttggatccactttcttgctgatttgacacattttagtttacgtggcaattgctgactgtacaa 17371728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 137
Target Start/End: Original strand, 40198570 - 40198633
Alignment:
Q  71 aaaataaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||| |||||||||||||| ||||   || || ||||||||||||||| ||||||||||||||||||    
T  40198570 aaaaaaaggctaaaatatgctttt---ccctgcaaatatagcgagtttgggttttggtccctggtaa 40198633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 41935126 - 41935078
Alignment:
Q  81 taaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtc 129  Q
    ||||||||||||||||||| || ||||||| ||||||| ||||||||||    
T  41935126 taaaatatgtttttggtccctgcaaatataacgagtttgggttttggtc 41935078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 54121760 - 54121700
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||| ||||| ||| || |||||  |||||||| ||||||||||||||||||    
T  54121760 aggctaaaatatgattttgctccctgcaaatacggcgagtttgggttttggtccctggtaa 54121700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 133
Target Start/End: Complemental strand, 19675679 - 19675624
Alignment:
Q  78 ggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctg 133  Q
    |||||||||||| ||||||||| || ||||||| ||||||| | ||||||||||||    
T  19675679 ggctaaaatatgcttttggtccctgcaaatataacgagtttggattttggtccctg 19675624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 22205281 - 22205222
Alignment:
Q  78 ggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||| |||| |||| || |||||||| |||| || |||||||||||||||||    
T  22205281 ggctaaaatatgcttttagtccctgcaaatatagagagtgtaagttttggtccctggtaa 22205222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 137
Target Start/End: Original strand, 47359510 - 47359573
Alignment:
Q  74 ataaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||| ||||||||||||||| || |||| ||||||||||| |||  ||||| |||||||||||    
T  47359510 ataagactaaaatatgtttttcgttcttgcaaatatagcgaatttgagttttagtccctggtaa 47359573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 29060821 - 29060771
Alignment:
Q  194 ccactttcttgctgatttggctcatttttgcttatgtggcaagtgctgact 244  Q
    ||||||||||||||||||  ||||||||||| || ||||||| ||||||||    
T  29060821 ccactttcttgctgatttatctcatttttgcctacgtggcaaatgctgact 29060771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 117
Target Start/End: Complemental strand, 5259212 - 5259171
Alignment:
Q  76 aaggctaaaatatgtttttggtccttgaaaatatagcgagtt 117  Q
    |||||||||||||||||||||||| || |||||| |||||||    
T  5259212 aaggctaaaatatgtttttggtccctgcaaatatggcgagtt 5259171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 17281569 - 17281630
Alignment:
Q  76 aaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||| || |||| |||| || ||||||||||| ||| | ||||||||||||||||    
T  17281569 aaggctaaaatgtgcttttagtccctgcaaatatagcgaatttggattttggtccctggtaa 17281630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 17370071 - 17370132
Alignment:
Q  76 aaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||| || |||| |||| || ||||||||||| ||| | ||||||||||||||||    
T  17370071 aaggctaaaatgtgcttttagtccctgcaaatatagcgaatttggattttggtccctggtaa 17370132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 29060943 - 29060882
Alignment:
Q  76 aaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||||||||||  ||| || |||||||||||||||   ||||||||| ||||||    
T  29060943 aaggctaaaatatgtttttaatccctgcaaatatagcgagtttgaattttggtccttggtaa 29060882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 422
Target Start/End: Complemental strand, 55541802 - 55541730
Alignment:
Q  352 gaaatcaattaatcatgtcttctttagcaacatgtttgttcatga--gagaacaagcatcctaaacttccacc 422  Q
    ||||||||| |||||||| ||||||| ||||||||||||| || |   |||||||||||||||| ||| ||||    
T  55541802 gaaatcaataaatcatgttttctttaccaacatgtttgttgatcaacaagaacaagcatcctaatctttcacc 55541730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 55542640 - 55542579
Alignment:
Q  76 aaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||| |||||||| ||| || |||||||||  |||| || |||||||||||||||    
T  55542640 aaggctaaaatctgtttttgatccctgcaaatatagcatgtttgggatttggtccctggtaa 55542579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 17371901 - 17371845
Alignment:
Q  81 taaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||| ||||| ||| || ||||||| ||| ||| ||||||||||||||||||    
T  17371901 taaaatatgcttttgatccctgcaaatataacgaatttgggttttggtccctggtaa 17371845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 30091115 - 30091055
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||| ||||||||| || ||||||  |||||||| |||||| ||| ||||||    
T  30091115 aggctaaaatatggttttggtccatgcaaatatgacgagtttaagttttgatccatggtaa 30091055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 55541048 - 55541088
Alignment:
Q  194 ccactttcttgctgatttggctcatttttgcttatgtggca 234  Q
    ||||||| |||||||||||| ||||||||||||||| ||||    
T  55541048 ccactttgttgctgatttggttcatttttgcttatgcggca 55541088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0562 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: scaffold0562
Description:

Target: scaffold0562; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 195 - 276
Target Start/End: Original strand, 10046 - 10127
Alignment:
Q  195 cactttcttgctgatttggctcatttttgcttatgtggcaagtgctgactatacaaatttgtatacatggcatctaggtggc 276  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| || || ||| |||||||||| |||| ||||||||    
T  10046 cactttcttgctgatttggctcatttttgcttatgtgccaagtgctggctgtataaaattgtatacattgcatttaggtggc 10127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0562; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 9921 - 9981
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||| ||||| ||| || ||||||||||||||| | ||||||||||||||||    
T  9921 aggctaaaatatgcttttgatccctgcaaatatagcgagtttggattttggtccctggtaa 9981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0562; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 394
Target Start/End: Original strand, 10225 - 10273
Alignment:
Q  346 ctatgtgaaatcaattaatcatgtcttctttagcaacatgtttgttcat 394  Q
    |||||||||||||||||||||| ||||||||| ||| ||||||||||||    
T  10225 ctatgtgaaatcaattaatcatctcttctttaccaatatgtttgttcat 10273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 67 - 137
Target Start/End: Original strand, 27262897 - 27262967
Alignment:
Q  67 tataaaaataaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||| |||||||||||||||||||||||||||| || |||||||||||||||  |||||||||||||||||    
T  27262897 tatataaataaggctaaaatatgtttttggtccctgcaaatatagcgagtttgtgttttggtccctggtaa 27262967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 9774949 - 9774888
Alignment:
Q  76 aaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||||| ||||||||| || ||||||||||||||| ||||||||||||||||||    
T  9774949 aaggctaaaatatgcttttggtccctgcaaatatagcgagtttgggttttggtccctggtaa 9774888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 68 - 137
Target Start/End: Complemental strand, 23470038 - 23469969
Alignment:
Q  68 ataaaaataaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||| | |||||||||||||||||||||| || ||||||||||||||| ||||||| ||||||||||    
T  23470038 ataaaaaaatggctaaaatatgtttttggtccctgcaaatatagcgagtttcggttttgatccctggtaa 23469969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 27264276 - 27264216
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||| ||||||||| || ||||||||||||||| ||||||||||||||||||    
T  27264276 aggctaaaatatgattttggtccctgcaaatatagcgagtttgggttttggtccctggtaa 27264216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 73 - 137
Target Start/End: Original strand, 37395628 - 37395692
Alignment:
Q  73 aataaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||||||||||||||||| || ||||||||||  ||| ||||||||||||||||||    
T  37395628 aataaggctaaaatatgtttttggtccctgcaaatatagcgtatttgggttttggtccctggtaa 37395692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 46075109 - 46075050
Alignment:
Q  78 ggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||||||||| ||| || ||||||||||||||| ||||||||||||||||||    
T  46075109 ggctaaaatatgtttttgatccctgcaaatatagcgagtttgggttttggtccctggtaa 46075050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 47038864 - 47038925
Alignment:
Q  76 aaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||||||||| |||| || ||||||||| ||||| ||||||||||||||||||    
T  47038864 aaggctaaaatatgtttttagtccctgcaaatatagctagtttgggttttggtccctggtaa 47038925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 35721100 - 35721160
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||||||||||||| || ||||||| ||| ||| ||||||||||||||||||    
T  35721100 aggctaaaatatgtttttggtccctgcaaatataacgaatttgggttttggtccctggtaa 35721160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 24609919 - 24609978
Alignment:
Q  78 ggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||||||||||||| || |||||| |||||||| ||||||||||||| ||||    
T  24609919 ggctaaaatatgtttttggtccctgcaaatatggcgagtttgggttttggtccctagtaa 24609978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 75 - 137
Target Start/End: Complemental strand, 24611179 - 24611117
Alignment:
Q  75 taaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||||||||||||||| || ||||||  |||||||  |||||||||||||||||    
T  24611179 taaggctaaaatatgtttttggtccctgtaaatatgacgagtttgagttttggtccctggtaa 24611117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 26863857 - 26863919
Alignment:
Q  75 taaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||| |||||||||||| || ||||||||||| |||  |||||||||||||||||    
T  26863857 taaggctaaaatgtgtttttggtccctgcaaatatagcgaatttgagttttggtccctggtaa 26863919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 11710551 - 11710612
Alignment:
Q  76 aaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||||||||||| ||| || ||||||| |||| || ||||||||||||||||||    
T  11710551 aaggctaaaatatgtttttgatccctgtaaatataacgaggttgggttttggtccctggtaa 11710612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 20723749 - 20723688
Alignment:
Q  76 aaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||||||||||||||| || ||||||||||| |||  ||||| |||||||||||    
T  20723749 aaggctaaaatatgtttttggtccctgcaaatatagcgaatttgagttttagtccctggtaa 20723688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 133
Target Start/End: Complemental strand, 48589022 - 48588965
Alignment:
Q  76 aaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctg 133  Q
    |||||||||||||||||||||||| || |||||| | |||||| ||||||||||||||    
T  48589022 aaggctaaaatatgtttttggtccctgtaaatatggtgagtttgggttttggtccctg 48588965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 133
Target Start/End: Complemental strand, 48594109 - 48594052
Alignment:
Q  76 aaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctg 133  Q
    |||||||||||||||||||||||| || |||||| |||||||| ||||||| ||||||    
T  48594109 aaggctaaaatatgtttttggtccctgtaaatatggcgagtttgggttttgatccctg 48594052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 133
Target Start/End: Complemental strand, 48598720 - 48598663
Alignment:
Q  76 aaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctg 133  Q
    |||||||||||||||||||||||| || |||||| |||||||| ||||||| ||||||    
T  48598720 aaggctaaaatatgtttttggtccctgtaaatatggcgagtttgggttttgatccctg 48598663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 9774040 - 9774096
Alignment:
Q  81 taaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||||||||| || ||||||| |||||||  |||||||||||||||||    
T  9774040 taaaatatgtttttggtccctgcaaatataacgagtttgagttttggtccctggtaa 9774096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 17977623 - 17977559
Alignment:
Q  73 aataaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||| ||||||| ||||||||| || ||||||||||| ||| ||||||||||| ||||||    
T  17977623 aataaggcttaaatatggttttggtccctgcaaatatagcgaatttgggttttggtccttggtaa 17977559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 35722345 - 35722285
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||||||||||||| || ||||||||||| ||| | |||||||| |||||||    
T  35722345 aggctaaaatatgtttttggtccctgtaaatatagcgaatttggattttggtctctggtaa 35722285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 39163084 - 39163024
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||| ||||||||| || |||||| ||||| || ||||||||||||||||||    
T  39163084 aggctaaaatatgcttttggtccctgcaaatatggcgaggttgggttttggtccctggtaa 39163024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 11711312 - 11711254
Alignment:
Q  78 ggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||||||||||||| || ||||||||||| ||| || |||||||||||||||    
T  11711312 ggctaaaatatgtttttggtccctgcaaatatagcgaattt-gggtttggtccctggtaa 11711254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 20722472 - 20722531
Alignment:
Q  78 ggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||| || ||||||||| || ||||||||||| ||| ||||||||||||||||||    
T  20722472 ggctaaaatgtgcttttggtccctgcaaatatagcgaatttgggttttggtccctggtaa 20722531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 24427428 - 24427369
Alignment:
Q  78 ggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||||||||||||| |  |||||||||||||||  ||||| |||||||||||    
T  24427428 ggctaaaatatgtttttggtccctacaaatatagcgagtttgagttttagtccctggtaa 24427369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 137
Target Start/End: Complemental strand, 35911951 - 35911888
Alignment:
Q  74 ataaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||||||| ||||||||| || ||||||||||| ||| | ||||||||| ||||||    
T  35911951 ataaggctaaaatatgcttttggtccctgcaaatatagcgaatttggattttggtccttggtaa 35911888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 30722235 - 30722285
Alignment:
Q  194 ccactttcttgctgatttggctcatttttgcttatgtggcaagtgctgact 244  Q
    ||||||||||||||||||| ||||||||||| || ||||||| ||||||||    
T  30722235 ccactttcttgctgatttgtctcatttttgcctacgtggcaaatgctgact 30722285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 34934807 - 34934747
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||| |||| |||| || ||||||||||| ||| ||||||||||| ||||||    
T  34934807 aggctaaaatatgctttttgtccctgcaaatatagcgaatttgggttttggtccttggtaa 34934747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 50164401 - 50164461
Alignment:
Q  76 aaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggta 136  Q
    |||||||||||||| ||||||||| || |||||| ||||||||  |||||||||| |||||    
T  50164401 aaggctaaaatatgcttttggtccctgcaaatatggcgagtttgagttttggtccttggta 50164461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 17976761 - 17976820
Alignment:
Q  78 ggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||| ||||||| ||||||| | || ||||||||||| ||| ||||||||||||||||||    
T  17976761 ggcttaaatatggttttggttcctgcaaatatagcgaatttgggttttggtccctggtaa 17976820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 37396899 - 37396840
Alignment:
Q  78 ggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||| ||||||||| || ||||||||||| |||  |||||||||| ||||||    
T  37396899 ggctaaaatatgcttttggtccctgcaaatatagcgaatttgagttttggtccttggtaa 37396840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 137
Target Start/End: Complemental strand, 13074636 - 13074574
Alignment:
Q  75 taaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||||| |||||||| | || ||||||  |||||||  |||||||||||||||||    
T  13074636 taaggctaaaatatatttttggttcctgcaaatatgacgagtttgagttttggtccctggtaa 13074574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 276
Target Start/End: Original strand, 24422634 - 24422716
Alignment:
Q  194 ccactttcttgctgatttggctcatttttgcttatgtggcaagtgctgactatacaaatttgtatacatggcatctaggtggc 276  Q
    ||||||||||||| ||||| ||||||| ||| |||||||||  |||||||||| ||||  |||| |  ||||||| |||||||    
T  24422634 ccactttcttgctaatttgtctcatttctgcctatgtggcatatgctgactatgcaaacatgtacatgtggcatccaggtggc 24422716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 27815438 - 27815500
Alignment:
Q  75 taaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||| ||||||| || |||||| || ||||||||| | ||| ||||||||||||||||||    
T  27815438 taaggcttaaatatggttctggtccctgcaaatatagccaatttgggttttggtccctggtaa 27815500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 137
Target Start/End: Complemental strand, 27816774 - 27816720
Alignment:
Q  83 aaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||| ||||||||| || ||||||||| | ||| ||||||||||||||||||    
T  27816774 aaatatggttttggtccctgcaaatatagccaatttgggttttggtccctggtaa 27816720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 127
Target Start/End: Complemental strand, 45979556 - 45979506
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttgg 127  Q
    ||||||||||||||||||||||| || ||||||||||| |||  |||||||    
T  45979556 aggctaaaatatgtttttggtccctgcaaatatagcgaatttgagttttgg 45979506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 125
Target Start/End: Complemental strand, 48857247 - 48857197
Alignment:
Q  75 taaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggtttt 125  Q
    ||||| |||||||||||||||||||||| ||||||| ||| ||||| ||||    
T  48857247 taaggttaaaatatgtttttggtccttgcaaatataacgaatttagatttt 48857197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 39162928 - 39162977
Alignment:
Q  178 aaaaaagttcctgaatccactttcttgctgatttggctcatttttgctta 227  Q
    |||||||| ||||  |||||||||||||||||||||||  ||||||||||    
T  39162928 aaaaaagtccctgggtccactttcttgctgatttggctagtttttgctta 39162977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 35910652 - 35910711
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||| ||||||||| || |||||||||   ||| ||||||||||||||||||    
T  35910652 aggctaaaatatgattttggtcc-tgcaaatatagcatatttcggttttggtccctggtaa 35910711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 46073884 - 46073944
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||| ||||| ||| || ||||||||| | ||| |||||| |||||||||||    
T  46073884 aggctaaaatatgcttttgatccctgcaaatatagcaaatttgggttttagtccctggtaa 46073944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 3936576 - 3936637
Alignment:
Q  76 aaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||    
T  3936576 aaggctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttggtccctggtaa 3936637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 6894069 - 6894010
Alignment:
Q  78 ggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||    
T  6894069 ggctaaaatatgtttttggtccttgcaaatatgacgagtttaggttttggtccctggtaa 6894010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 3954051 - 3954111
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||||||||||||||||| ||||||| ||| ||| ||||||||||||||||||    
T  3954051 aggctaaaatatgtttttggtccttgcaaatatatcgaatttgggttttggtccctggtaa 3954111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 27571190 - 27571129
Alignment:
Q  76 aaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||||| ||||||||| || ||||||||||||||| ||||||| ||||||||||    
T  27571190 aaggctaaaatatgattttggtccctgcaaatatagcgagtttgggttttgatccctggtaa 27571129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 3938120 - 3938060
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||| |||| |||| || ||||||||| ||||||||||||||||||||||||    
T  3938120 aggctaaaatatgcttttagtccctgcaaatatagcaagtttaggttttggtccctggtaa 3938060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 4565392 - 4565452
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||||||||| |||| |  ||||||||||||||| ||||||||||||||||||    
T  4565392 aggctaaaatatgtttttagtccctacaaatatagcgagtttgggttttggtccctggtaa 4565452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 31540495 - 31540555
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||||||||||||| || ||||||| ||| ||| ||||||||| ||||||||    
T  31540495 aggctaaaatatgtttttggtccctgcaaatataacgaatttgggttttggtacctggtaa 31540555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 131
Target Start/End: Original strand, 27570058 - 27570109
Alignment:
Q  80 ctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccc 131  Q
    |||||||||| |||||||||||| ||||||||||||||| ||||||| ||||    
T  27570058 ctaaaatatgattttggtccttgcaaatatagcgagtttgggttttgttccc 27570109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 34911889 - 34911828
Alignment:
Q  76 aaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||||| ||||||||| || ||||||||||||||| | ||||| ||||| ||||    
T  34911889 aaggctaaaatatgattttggtccctgcaaatatagcgagtttggattttgatccctagtaa 34911828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 14809153 - 14809217
Alignment:
Q  68 ataaaaataaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccct 132  Q
    ||||||||||| |||||||||||||||| ||| |  ||||||||||| ||| | |||||||||||    
T  14809153 ataaaaataagcctaaaatatgtttttgatccctacaaatatagcgaatttggattttggtccct 14809217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 131
Target Start/End: Original strand, 15599755 - 15599818
Alignment:
Q  68 ataaaaataaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccc 131  Q
    |||||||| ||||||||||||| ||||||||| |  |||||| |||| ||| ||||||||||||    
T  15599755 ataaaaattaggctaaaatatgcttttggtccctacaaatatggcgaatttgggttttggtccc 15599818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 31541681 - 31541622
Alignment:
Q  78 ggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||||||||| ||| || ||||||| ||| ||| |||||| |||||||||||    
T  31541681 ggctaaaatatgtttttgatccctgcaaatataacgaattttggtttttgtccctggtaa 31541622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 35605517 - 35605463
Alignment:
Q  188 ctgaatccactttcttgctgatttggctcatttttgcttatgtggcaagtgctga 242  Q
    ||||| ||||||||||||||||||||  |||||| |||||| ||||| |||||||    
T  35605517 ctgaacccactttcttgctgatttggtgcattttcgcttatatggcaggtgctga 35605463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 15604114 - 15604058
Alignment:
Q  80 ctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||| ||||||||||||| | |||||| |||||||| ||||||||||||| ||||    
T  15604114 ctaaaatgtgtttttggtcct-gcaaatatggcgagtttgggttttggtccctagtaa 15604058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 4777639 - 4777699
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||| ||||||| |||| ||||||| ||||||||  ||||| | ||||||||||||||||    
T  4777639 aggcttaaatatgcttttagtccttgcaaatatagtaagtttggattttggtccctggtaa 4777699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 24195605 - 24195666
Alignment:
Q  76 aaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||||||||||||||| || ||||||||||||||| ||||||| ||||||||||    
T  24195605 aaggctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttgctccctggtaa 24195666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 68 - 137
Target Start/End: Complemental strand, 31848213 - 31848144
Alignment:
Q  68 ataaaaataaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||| |||||||||||||||||| |||| || ||||||||||| ||| ||||||||||||||||||    
T  31848213 ataaaaattaggctaaaatatgtttttagtccctgcaaatatagcgaatttgggttttggtccctggtaa 31848144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 35212066 - 35212127
Alignment:
Q  76 aaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||||||||||||||| || ||||||  ||||||| ||||||||||||||||||    
T  35212066 aaggctaaaatatgtttttggtccctgcaaatatgacgagtttgggttttggtccctggtaa 35212127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 65 - 137
Target Start/End: Original strand, 13418937 - 13419009
Alignment:
Q  65 aatataaaaataaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||  ||||||||||||||||||||||||| || |||||| |||| ||| ||| ||||||||||||||    
T  13418937 aatataaacttaaggctaaaatatgtttttggtccctgcaaatattgcgaatttgggtattggtccctggtaa 13419009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 25046300 - 25046240
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||| |||||||||||| |||||| |||||||||| ||||||||| ||||||    
T  25046300 aggctaaaatatgattttggtccttgcaaatatggcgagtttagattttggtccatggtaa 25046240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 137
Target Start/End: Complemental strand, 12385774 - 12385707
Alignment:
Q  70 aaaaataaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||| ||||| ||||||||| ||||||||| || ||||||||||||||| | ||||||||||||||||    
T  12385774 aaaattaaggataaaatatgattttggtccctgcaaatatagcgagtttggattttggtccctggtaa 12385707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 137
Target Start/End: Original strand, 38742173 - 38742240
Alignment:
Q  70 aaaaataaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||| |||| |||||||||||||| |||| || ||||||||||||||| |||||||||||| |||||    
T  38742173 aaaaaaaaggttaaaatatgtttttagtccctgcaaatatagcgagtttgggttttggtccccggtaa 38742240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 41693643 - 41693704
Alignment:
Q  76 aaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||||||||||| ||| || |||||| |||| ||| ||||||||||||||||||    
T  41693643 aaggctaaaatatgtttttgatccctgcaaatatggcgaatttgggttttggtccctggtaa 41693704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 42254956 - 42255017
Alignment:
Q  76 aaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||||| ||||||||| || |||||| ||||||||  |||||||||||||||||    
T  42254956 aaggctaaaatatgcttttggtccctgtaaatatggcgagtttgagttttggtccctggtaa 42255017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 5611567 - 5611507
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||| ||||||||| || ||||||||||||||| |||||| |||||| ||||    
T  5611567 aggctaaaatatgattttggtccctgcaaatatagcgagtttgggttttcgtccctcgtaa 5611507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 17066424 - 17066484
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||| ||||  ||| || ||||||||||||||| ||||||||||||||||||    
T  17066424 aggctaaaatatgcttttaatccctgcaaatatagcgagtttgggttttggtccctggtaa 17066484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 32197969 - 32197909
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||| ||||||||| || ||||||||||| ||| ||||||||||| ||||||    
T  32197969 aggctaaaatatgcttttggtccctgcaaatatagcgaatttgggttttggtccttggtaa 32197909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 41695015 - 41694955
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||||||||  ||| || |||||||||||||||  |||||||||||||||||    
T  41695015 aggctaaaatatgtttttcatccctgcaaatatagcgagtttgagttttggtccctggtaa 41694955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 31489993 - 31489942
Alignment:
Q  79 gctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtcc 130  Q
    ||||||||||||||||||||| || ||||||| ||||||| |||||||||||    
T  31489993 gctaaaatatgtttttggtccctgcaaatataacgagtttgggttttggtcc 31489942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 137
Target Start/End: Complemental strand, 36749314 - 36749247
Alignment:
Q  70 aaaaataaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||| ||||||||||||||||||||||| ||| ||||||  |||||||  |||||||||||| ||||    
T  36749314 aaaaaaaaggctaaaatatgtttttggtcattgcaaatatgacgagtttgagttttggtccctagtaa 36749247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 11217132 - 11217071
Alignment:
Q  76 aaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||| ||||||||| ||||||||| || |||||||||||||||   ||||||||||||||||    
T  11217132 aaggttaaaatatgcttttggtccctgcaaatatagcgagtttgaattttggtccctggtaa 11217071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 554362 - 554402
Alignment:
Q  194 ccactttcttgctgatttggctcatttttgcttatgtggca 234  Q
    ||||| ||||| |||||||||||||||||||||||||||||    
T  554362 ccactgtcttgttgatttggctcatttttgcttatgtggca 554402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 12933418 - 12933478
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||| ||||||||| || |||||||| ||||||   ||||||||||||||||    
T  12933418 aggctaaaatatgcttttggtccctgcaaatatagtgagtttgaattttggtccctggtaa 12933478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 24197163 - 24197103
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||| ||||||||| || ||||||||||| |||  |||||||| ||||||||    
T  24197163 aggctaaaatatgcttttggtccctgcaaatatagcgaatttgagttttggttcctggtaa 24197103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 234
Target Start/End: Complemental strand, 31489876 - 31489836
Alignment:
Q  194 ccactttcttgctgatttggctcatttttgcttatgtggca 234  Q
    ||||||||||||||||||| ||||||||||| |||||||||    
T  31489876 ccactttcttgctgatttgtctcatttttgcctatgtggca 31489836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 32543581 - 32543637
Alignment:
Q  178 aaaaaagttcctgaatccactttcttgctgatttggctcatttttgcttatgtggca 234  Q
    |||| ||| ||||| | ||||||||||||||||||  ||||||||||||||||||||    
T  32543581 aaaatagtccctgagtacactttcttgctgatttgaatcatttttgcttatgtggca 32543637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 32544830 - 32544774
Alignment:
Q  81 taaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||| ||||||||| || ||||||||||| ||| ||||||||||| ||||||    
T  32544830 taaaatatgattttggtccctgcaaatatagcgaatttgggttttggtccttggtaa 32544774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 554243 - 554298
Alignment:
Q  76 aaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccc 131  Q
    |||||||||||||  | ||||||| || ||||||||||||||| ||||||||||||    
T  554243 aaggctaaaatataatattggtccctgcaaatatagcgagtttgggttttggtccc 554298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 128
Target Start/End: Complemental strand, 39619851 - 39619800
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggt 128  Q
    ||||||||||||| ||||||||| || |||||| |||||||| |||||||||    
T  39619851 aggctaaaatatgcttttggtccatgcaaatatggcgagtttgggttttggt 39619800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 269
Target Start/End: Original strand, 9454236 - 9454310
Alignment:
Q  195 cactttcttgctgatttggctcatttttgcttatgtggcaagtgctgactatacaaatttgtatacatggcatct 269  Q
    |||||||||||||||| |||  |||||||||||||||||| || |||||| |  ||| ||||| || ||||||||    
T  9454236 cactttcttgctgattaggcatatttttgcttatgtggcaggtcctgactgtgtaaacttgtacacgtggcatct 9454310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 244
Target Start/End: Complemental strand, 9454926 - 9454860
Alignment:
Q  178 aaaaaagttcctgaatccactttcttgctgatttggctcatttttgcttatgtggcaagtgctgact 244  Q
    |||| ||| |||||| ||||||||||||||||||||| ||||||| || |||||  | |||||||||    
T  9454926 aaaatagtccctgaacccactttcttgctgatttggcacattttttctcatgtgataggtgctgact 9454860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 137
Target Start/End: Original strand, 31853549 - 31853607
Alignment:
Q  79 gctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||||||||||| || |||||| | |||||| | ||||||||||| ||||    
T  31853549 gctaaaatatgtttttggtccctgcaaatattgtgagtttggattttggtccctagtaa 31853607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 133
Target Start/End: Original strand, 32196685 - 32196739
Alignment:
Q  79 gctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctg 133  Q
    ||||||||||||||||||||| || ||||||||||  ||| | ||||||||||||    
T  32196685 gctaaaatatgtttttggtccctgcaaatatagcgtatttggattttggtccctg 32196739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 35837914 - 35837955
Alignment:
Q  68 ataaaaataaggctaaaatatgtttttggtccttgaaaatat 109  Q
    |||||||||||||||||||||| ||||||||| || ||||||    
T  35837914 ataaaaataaggctaaaatatggttttggtccctgcaaatat 35837955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 131
Target Start/End: Original strand, 36748198 - 36748250
Alignment:
Q  78 ggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccc 131  Q
    |||||||||||||||||||||| || |||||| | |||||| ||||||||||||    
T  36748198 ggctaaaatatgtttttggtccctgcaaatat-gagagtttgggttttggtccc 36748250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 243
Target Start/End: Original strand, 36748316 - 36748365
Alignment:
Q  194 ccactttcttgctgatttggctcatttttgcttatgtggcaagtgctgac 243  Q
    ||||||| ||||||||||| ||||||||||| |||||||||  |||||||    
T  36748316 ccacttttttgctgatttgtctcatttttgcctatgtggcagatgctgac 36748365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 41053832 - 41053873
Alignment:
Q  68 ataaaaataaggctaaaatatgtttttggtccttgaaaatat 109  Q
    |||||||||||||||||||||| ||||||||| || ||||||    
T  41053832 ataaaaataaggctaaaatatggttttggtccctgcaaatat 41053873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 137
Target Start/End: Complemental strand, 43869965 - 43869912
Alignment:
Q  84 aatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||| ||||||||| || ||||||||| | ||| ||||||||||||||||||    
T  43869965 aatatggttttggtccctgcaaatatagccaatttgggttttggtccctggtaa 43869912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 44568320 - 44568381
Alignment:
Q  72 aaataaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctg 133  Q
    |||||||||||||||||| ||||||||| || ||||||| |  |||| |||||| |||||||    
T  44568320 aaataaggctaaaatatggttttggtccctgcaaatataactcgttttggttttagtccctg 44568381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 5610275 - 5610315
Alignment:
Q  193 tccactttcttgctgatttggctcatttttgcttatgtggc 233  Q
    |||||||| ||||||||||| | ||||||||||||||||||    
T  5610275 tccacttttttgctgatttgtcacatttttgcttatgtggc 5610315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 11586 - 11522
Alignment:
Q  73 aataaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||||||||||||||||| || ||||||||||  ||| ||||||||||||||||||    
T  11586 aataaggctaaaatatgtttttggtccctgcaaatatagcgtatttgggttttggtccctggtaa 11522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 10315 - 10374
Alignment:
Q  78 ggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||| ||||||||| || ||||||||||| |||  |||||||||| ||||||    
T  10315 ggctaaaatatgcttttggtccctgcaaatatagcgaatttgagttttggtccttggtaa 10374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 69 - 133
Target Start/End: Original strand, 29291350 - 29291414
Alignment:
Q  69 taaaaataaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctg 133  Q
    ||||||| ||||||||||||| |||||||||||| |||||| |||||||| ||||||||||||||    
T  29291350 taaaaatcaggctaaaatatgcttttggtccttgcaaatatggcgagtttgggttttggtccctg 29291414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 17517369 - 17517309
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||||||||||||| || |||||| ||||||||  |||||||||||||||||    
T  17517369 aggctaaaatatgtttttggtccctgcaaatatggcgagtttgagttttggtccctggtaa 17517309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 34998201 - 34998141
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||| ||||| ||| || ||||||||||||||| ||||||||||||||||||    
T  34998201 aggctaaaatatgcttttgatccctgcaaatatagcgagtttgggttttggtccctggtaa 34998141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 133
Target Start/End: Complemental strand, 1974219 - 1974156
Alignment:
Q  70 aaaaataaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctg 133  Q
    ||||||| |||||||||||||||||| |||||| ||||||||||| |||  |||||||||||||    
T  1974219 aaaaatatggctaaaatatgtttttgatccttgcaaatatagcgaatttgagttttggtccctg 1974156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 18810532 - 18810591
Alignment:
Q  78 ggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||| ||||||||| || |||||||| |||||| ||||||||||||||||||    
T  18810532 ggctaaaatatgattttggtccctgcaaatatagtgagtttgggttttggtccctggtaa 18810591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 21165246 - 21165305
Alignment:
Q  78 ggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||| ||||||||| || |||||||||||||||  |||||||||||||||||    
T  21165246 ggctaaaatatgcttttggtccctgcaaatatagcgagtttgtgttttggtccctggtaa 21165305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 16995449 - 16995510
Alignment:
Q  76 aaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||||||||||||||| || |||||||  || ||| ||||||||||||||||||    
T  16995449 aaggctaaaatatgtttttggtccctgcaaatataaagaatttgggttttggtccctggtaa 16995510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 21953205 - 21953265
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||| ||||||||| || ||||||||||| ||| | ||||||||||||||||    
T  21953205 aggctaaaatatgcttttggtccctgcaaatatagcgaatttggattttggtccctggtaa 21953265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 62 - 133
Target Start/End: Original strand, 17516147 - 17516217
Alignment:
Q  62 tttaatataaaaataaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctg 133  Q
    ||||| ||||||| ||| |||||||||||||||||||| || |||||| | |||||| ||||||||||||||    
T  17516147 tttaaaataaaaa-aagactaaaatatgtttttggtccctgcaaatatggtgagtttgggttttggtccctg 17516217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 20897556 - 20897497
Alignment:
Q  78 ggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||| ||||||||| || |||||||| || ||| ||||||||||||||||||    
T  20897556 ggctaaaatatggttttggtccctgcaaatatagtgaatttgggttttggtccctggtaa 20897497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 232
Target Start/End: Complemental strand, 17000233 - 17000179
Alignment:
Q  178 aaaaaagttcctgaatccactttcttgctgatttggctcatttttgcttatgtgg 232  Q
    |||||||| |||| | ||||||||||||||||||||| |||||||||||| ||||    
T  17000233 aaaaaagtccctggacccactttcttgctgatttggcacatttttgcttaggtgg 17000179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 3276366 - 3276426
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||||||||||||| || ||||||||||| ||| | |||| |||||| ||||    
T  3276366 aggctaaaatatgtttttggtccctgcaaatatagcgaatttggattttagtccctagtaa 3276426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 14656269 - 14656229
Alignment:
Q  69 taaaaataaggctaaaatatgtttttggtccttgaaaatat 109  Q
    ||||||||||||||||||||| |||||||||||| ||||||    
T  14656269 taaaaataaggctaaaatatggttttggtccttgcaaatat 14656229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 1972400 - 1972459
Alignment:
Q  78 ggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||||||||||||| || ||||| ||||| ||| |||||| ||| |||||||    
T  1972400 ggctaaaatatgtttttggtccctgcaaataaagcgaatttgggttttagtctctggtaa 1972459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 26421785 - 26421726
Alignment:
Q  192 atccactttcttgctgatttggctcatttttgcttatgtggcaagtgctgactatacaaa 251  Q
    ||||||||||||||||||||| ||||||||||| ||||| |||  || ||||||| ||||    
T  26421785 atccactttcttgctgatttgtctcatttttgcctatgtagcagatgatgactatgcaaa 26421726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 129
Target Start/End: Complemental strand, 30253609 - 30253547
Alignment:
Q  67 tataaaaataaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtc 129  Q
    |||||||| ||| |||||||||||||||||||| || ||||| ||||||| |  |||||||||    
T  30253609 tataaaaaaaagactaaaatatgtttttggtccctgcaaatacagcgagtatgagttttggtc 30253547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 133
Target Start/End: Complemental strand, 1171712 - 1171655
Alignment:
Q  76 aaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctg 133  Q
    |||| ||||||||||||||| ||| || ||||||| ||||||| | ||||||||||||    
T  1171712 aaggttaaaatatgtttttgatccctgcaaatataacgagtttggtttttggtccctg 1171655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 3279440 - 3279403
Alignment:
Q  194 ccactttcttgctgatttggctcatttttgcttatgtg 231  Q
    |||||||| | |||||||||||||||||||||||||||    
T  3279440 ccactttcgtactgatttggctcatttttgcttatgtg 3279403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 3279560 - 3279499
Alignment:
Q  76 aaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||| ||||||||||||||| ||| || |||||||||||||||   ||||||| ||||||||    
T  3279560 aaggttaaaatatgtttttgatccctgcaaatatagcgagtttgaattttggttcctggtaa 3279499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 20391212 - 20391273
Alignment:
Q  76 aaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||| ||||||||| ||||||||| || |||||||| || ||| ||||||||||||| ||||    
T  20391212 aaggttaaaatatgcttttggtccctgcaaatatagtgaatttgggttttggtccctcgtaa 20391273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 25440730 - 25440673
Alignment:
Q  80 ctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||| ||||||||||||  |||||| ||||||||   ||||||||||||||||    
T  25440730 ctaaaatatatttttggtccttacaaatatggcgagtttgaattttggtccctggtaa 25440673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 26421904 - 26421843
Alignment:
Q  76 aaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||| ||||||||||||  || ||||||||||| |||  ||||| |||||||||||    
T  26421904 aaggctaaaacatgtttttggtctctgcaaatatagcgaatttgagttttagtccctggtaa 26421843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 12757601 - 12757641
Alignment:
Q  69 taaaaataaggctaaaatatgtttttggtccttgaaaatat 109  Q
    ||||||||||||||||||||| ||||||||| || ||||||    
T  12757601 taaaaataaggctaaaatatggttttggtccctgcaaatat 12757641  T

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Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 34995113 - 34995173
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||| ||||| ||| || ||||||||||| |||  |||||||| ||||||||    
T  34995113 aggctaaaatatgcttttgatccctgcaaatatagcgaatttgagttttggttcctggtaa 34995173  T

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Target: scaffold0001 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 72 - 137
Target Start/End: Complemental strand, 121050 - 120985
Alignment:
Q  72 aaataaggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||| |||||||||||| ||||||||| || ||||||| ||||||| ||||||||||||||||||    
T  121050 aaatacggctaaaatatgcttttggtccctgcaaatataacgagtttgggttttggtccctggtaa 120985  T

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Target: scaffold0001; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 119593 - 119652
Alignment:
Q  78 ggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||| ||||||||| || ||||||||||| |||  |||||||||||||||||    
T  119593 ggctaaaatatgcttttggtccctgcaaatatagcgaatttgagttttggtccctggtaa 119652  T

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Target: scaffold0106 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 30967 - 30907
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||| ||||||||| || |||||||| |||||| ||||||||||||||||||    
T  30967 aggctaaaatatggttttggtccctgcaaatatagtgagtttgggttttggtccctggtaa 30907  T

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Target: scaffold0106; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 29728 - 29788
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||| ||||||||| || ||||| | ||||||| | ||||||||||||||||    
T  29728 aggctaaaatatgcttttggtccctgcaaataaaacgagtttggattttggtccctggtaa 29788  T

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Target: scaffold0002 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 345957 - 345897
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||||||||||||| || ||||||||||| ||| ||||||||||||| ||||    
T  345957 aggctaaaatatgtttttggtccctgcaaatatagcgaatttgggttttggtccctagtaa 345897  T

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Target: scaffold0002; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 376325 - 376261
Alignment:
Q  178 aaaaaagttcctgaatccactttcttgctgatttggctcatttttgcttatgtggcaagtgctga 242  Q
    |||| ||| |||| ||||||||||||  |||||||| ||||||||||||||||||||||||||||    
T  376325 aaaatagtccctggatccactttctttttgatttggttcatttttgcttatgtggcaagtgctga 376261  T

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Target: scaffold0002; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 344936 - 344996
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||| ||||||| ||||||||| || |||||| |||||||| ||||||||||||||||||    
T  344936 aggctcaaatatgattttggtccctgcaaatatggcgagtttgggttttggtccctggtaa 344996  T

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Target: scaffold0002; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 374335 - 374394
Alignment:
Q  78 ggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||| ||||| ||| || ||||||||||||||| ||||||||||||| ||||    
T  374335 ggctaaaatatgattttgatccctgcaaatatagcgagtttgggttttggtcccttgtaa 374394  T

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Target: scaffold0002; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 376429 - 376381
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggtttt 125  Q
    ||||||||||||| ||||||||| || ||||||||||||||| ||||||    
T  376429 aggctaaaatatgcttttggtccctgcaaatatagcgagtttgggtttt 376381  T

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Target: scaffold0230 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 490 - 431
Alignment:
Q  78 ggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    |||||||||||| ||||||||| || |||||||| |||||| ||||||||||||||||||    
T  490 ggctaaaatatgattttggtccctgcaaatatagtgagtttgggttttggtccctggtaa 431  T

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Target: scaffold0095 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 133
Target Start/End: Complemental strand, 42813 - 42759
Alignment:
Q  79 gctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctg 133  Q
    ||||||||||| |||||||||||| |||||| ||||||||  |||||||||||||    
T  42813 gctaaaatatgcttttggtccttgcaaatatggcgagtttgagttttggtccctg 42759  T

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Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 249
Target Start/End: Original strand, 202699 - 202753
Alignment:
Q  195 cactttcttgctgatttggctcatttttgcttatgtggcaagtgctgactataca 249  Q
    |||||||||||||||||||| | |||||||||||||||||  || ||||||||||    
T  202699 cactttcttgctgatttggcacctttttgcttatgtggcacttgatgactataca 202753  T

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Target: scaffold0009; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 202578 - 202638
Alignment:
Q  77 aggctaaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||||||| ||||||||| || ||||||| ||||||| | |||||||||| |||||    
T  202578 aggctaaaatatgcttttggtccctgcaaatataacgagtttggattttggtcccgggtaa 202638  T

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Target: scaffold0765 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0765
Description:

Target: scaffold0765; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 1863 - 1919
Alignment:
Q  81 taaaatatgtttttggtccttgaaaatatagcgagtttaggttttggtccctggtaa 137  Q
    ||||||||| ||||||||| || |||||||||||||||  |||||| ||||| ||||    
T  1863 taaaatatgattttggtccctgcaaatatagcgagtttgagttttgatccctagtaa 1919  T

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