View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14644_low_8 (Length: 343)

Name: NF14644_low_8
Description: NF14644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14644_low_8
NF14644_low_8
[»] chr6 (6 HSPs)
chr6 (18-325)||(11378711-11379022)
chr6 (106-161)||(16260662-16260717)
chr6 (103-161)||(8051014-8051072)
chr6 (103-161)||(26296245-26296303)
chr6 (105-146)||(862883-862924)
chr6 (109-161)||(31159123-31159175)
[»] chr5 (1 HSPs)
chr5 (103-161)||(32522574-32522632)
[»] chr1 (5 HSPs)
chr1 (106-164)||(49166651-49166709)
chr1 (106-161)||(8900833-8900888)
chr1 (106-161)||(32804291-32804346)
chr1 (107-161)||(5347008-5347062)
chr1 (105-137)||(39969805-39969837)
[»] chr8 (1 HSPs)
chr8 (105-161)||(24185570-24185626)
[»] chr7 (2 HSPs)
chr7 (106-161)||(2399739-2399794)
chr7 (105-161)||(21955381-21955436)
[»] chr2 (3 HSPs)
chr2 (102-161)||(12801085-12801144)
chr2 (105-161)||(11565039-11565095)
chr2 (109-161)||(33956332-33956384)
[»] chr4 (1 HSPs)
chr4 (106-164)||(52840307-52840364)


Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 325
Target Start/End: Original strand, 11378711 - 11379022
Alignment:
Q  18 aaaacatactccctttggtcatgtatctaacttataaatgtatctaatttgtaaatgtgagagggtagattaattattcaatgtaaaatacattgaataa 117  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||    
T  11378711 aaaacatactccctttggtcatttatctaacttataaatgtatctaatttgtaaatgtgacagggtacattaattattcaatgtaagatacattgaataa 11378810  T
Q  118 ttcatgtatctaatttataaatgtgactgagtacattaattatttaagagatgta-cccatcatcagattttagtttcaacaatgaatataatcacttta 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  11378811 ttcatgtatctaatttataaatgtgactgagtacattaattatttaagagatgtaccccatcatcagatttgagtttcaacaatgaatataatcacttta 11378910  T
Q  217 attaacaacaaaaatgaagaacc---cagagttttcactgatgactaataatctaacactaaacttaatacaatactggtatgatacatgttatttaaaa 313  Q
    |||| ||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11378911 attagcaacaaaaatgaagaacctatcagagttttcactgatgactaataatctaacactaaacttaatacaatactggtatgatacatgttatttaaaa 11379010  T
Q  314 tgataatggatt 325  Q
    ||||||||||||    
T  11379011 tgataatggatt 11379022  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 16260662 - 16260717
Alignment:
Q  106 tacattgaataattcatgtatctaatttataaatgtgactgagtacattaattatt 161  Q
    |||||||||||||| |||| |||||  ||||||||||||||| |||||||||||||    
T  16260662 tacattgaataattaatgtctctaacctataaatgtgactgaatacattaattatt 16260717  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 161
Target Start/End: Original strand, 8051014 - 8051072
Alignment:
Q  103 aaatacattgaataattcatgtatctaatttataaatgtgactgagtacattaattatt 161  Q
    ||||| ||||||||||| |||||| |||| ||||||||||| | | |||||||||||||    
T  8051014 aaatatattgaataattaatgtatataatctataaatgtgattaaatacattaattatt 8051072  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 161
Target Start/End: Original strand, 26296245 - 26296303
Alignment:
Q  103 aaatacattgaataattcatgtatctaatttataaatgtgactgagtacattaattatt 161  Q
    ||||||||| ||||||| |||||| |||| ||||||||||||||  ||| |||||||||    
T  26296245 aaatacattaaataattaatgtatttaatctataaatgtgactgtatacgttaattatt 26296303  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 862924 - 862883
Alignment:
Q  105 atacattgaataattcatgtatctaatttataaatgtgactg 146  Q
    ||||||||||||||| ||||||||||  ||||||||||||||    
T  862924 atacattgaataattaatgtatctaacctataaatgtgactg 862883  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 31159175 - 31159123
Alignment:
Q  109 attgaataattcatgtatctaatttataaatgtgactgagtacattaattatt 161  Q
    ||||||||| | ||||||||||  |||||||||||| || |||||||||||||    
T  31159175 attgaataactaatgtatctaacatataaatgtgaccgaatacattaattatt 31159123  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 103 - 161
Target Start/End: Complemental strand, 32522632 - 32522574
Alignment:
Q  103 aaatacattgaataattcatgtatctaatttataaatgtgactgagtacattaattatt 161  Q
    ||||||||||||||||| |||||||| || ||||||||||||||  |||||||||||||    
T  32522632 aaatacattgaataattaatgtatctgatctataaatgtgactgcatacattaattatt 32522574  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 106 - 164
Target Start/End: Complemental strand, 49166709 - 49166651
Alignment:
Q  106 tacattgaataattcatgtatctaatttataaatgtgactgagtacattaattatttaa 164  Q
    |||||||||||||| ||||||||||  ||||||||||||||  ||||||||||||||||    
T  49166709 tacattgaataattaatgtatctaacctataaatgtgactggatacattaattatttaa 49166651  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 8900833 - 8900888
Alignment:
Q  106 tacattgaataattcatgtatctaatttataaatgtgactgagtacattaattatt 161  Q
    |||||||||||||| ||||||||||  |||||||||||| |  |||||||||||||    
T  8900833 tacattgaataattaatgtatctaacctataaatgtgaccggatacattaattatt 8900888  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 32804346 - 32804291
Alignment:
Q  106 tacattgaataattcatgtatctaatttataaatgtgactgagtacattaattatt 161  Q
    |||||||||| ||| |||||||||   ||||||||||||||| |||||||||||||    
T  32804346 tacattgaatcattaatgtatctatcatataaatgtgactgaatacattaattatt 32804291  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 161
Target Start/End: Complemental strand, 5347062 - 5347008
Alignment:
Q  107 acattgaataattcatgtatctaatttataaatgtgactgagtacattaattatt 161  Q
    ||||||||||||| || |||||||| ||||||||||| ||  |||||||||||||    
T  5347062 acattgaataattaatatatctaatatataaatgtgaatggatacattaattatt 5347008  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 39969805 - 39969837
Alignment:
Q  105 atacattgaataattcatgtatctaatttataa 137  Q
    ||||||||||||||| |||||||||||||||||    
T  39969805 atacattgaataattgatgtatctaatttataa 39969837  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 24185570 - 24185626
Alignment:
Q  105 atacattgaataattcatgtatctaatttataaatgtgactgagtacattaattatt 161  Q
    ||||||||||||||| || |||||||  ||||||||||||||  |||||||||||||    
T  24185570 atacattgaataattaatatatctaacctataaatgtgactggatacattaattatt 24185626  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 2399739 - 2399794
Alignment:
Q  106 tacattgaataattcatgtatctaatttataaatgtgactgagtacattaattatt 161  Q
    ||||||||||| || |||||||||| ||||||||||||| |  |||||||||||||    
T  2399739 tacattgaatagttaatgtatctaacttataaatgtgaccggatacattaattatt 2399794  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 21955436 - 21955381
Alignment:
Q  105 atacattgaataattcatgtatctaatttataaatgtgactgagtacattaattatt 161  Q
    ||||||||||||||| |||||||| |  ||||||||||||||  |||||||||||||    
T  21955436 atacattgaataatt-atgtatctgacatataaatgtgactggatacattaattatt 21955381  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 12801085 - 12801144
Alignment:
Q  102 aaaatacattgaataattcatgtatctaatttataaatgtgactgagtacattaattatt 161  Q
    ||||| |||||||||||| |||||| |||| ||||||||||||| | || ||||||||||    
T  12801085 aaaattcattgaataattaatgtatttaatctataaatgtgactaaatatattaattatt 12801144  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 11565039 - 11565095
Alignment:
Q  105 atacattgaataattcatgtatctaatttataaatgtgactgagtacattaattatt 161  Q
    ||||||||||||||| ||||| || || ||||||||||||||  |||||||| ||||    
T  11565039 atacattgaataattaatgtacctgatctataaatgtgactggatacattaaatatt 11565095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 33956384 - 33956332
Alignment:
Q  109 attgaataattcatgtatctaatttataaatgtgactgagtacattaattatt 161  Q
    ||||||||||| |||||||||| |||||||| |||| |  |||||||||||||    
T  33956384 attgaataattaatgtatctaacttataaatatgaccggatacattaattatt 33956332  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 164
Target Start/End: Original strand, 52840307 - 52840364
Alignment:
Q  106 tacattgaataattcatgtatctaatttataaatgtgactgagtacattaattatttaa 164  Q
    |||||| ||||||| ||||||||||  |||||||||||| || ||||||||||||||||    
T  52840307 tacattaaataattaatgtatctaacatataaatgtgaccga-tacattaattatttaa 52840364  T

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