View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14645_high_2 (Length: 243)
Name: NF14645_high_2
Description: NF14645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14645_high_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 2568987 - 2568777
Alignment:
| Q |
15 |
caaaggctgcaagtgctcatgattttatatcaagcttaaaagatggttatgatacattgtgtggtgatagaggagttcaacttagtggtggtcaaaaaca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2568987 |
caaaggctgcaagtgctcatgattttatatcaagcttaaaagatggttatgatacattgtgtggtgatagaggagttcaacttagtggtggtcaaaaaca |
2568888 |
T |
|
| Q |
115 |
aagaattgcaatagctagagctatattgaagaatccagaggtgttgcttttggatgaagcaacaagtgcacttgatagtcagtctgagaaattagtccaa |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2568887 |
aagaattgcaatagctagagctatattgaagaatccagaggtgttgcttttggatgaagcaacaagtgcacttgatagtcaatctgagaaattagtccaa |
2568788 |
T |
|
| Q |
215 |
gatgctttaga |
225 |
Q |
| |
|
||||||||||| |
|
|
| T |
2568787 |
gatgctttaga |
2568777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 15 - 225
Target Start/End: Original strand, 2592283 - 2592493
Alignment:
| Q |
15 |
caaaggctgcaagtgctcatgattttatatcaagcttaaaagatggttatgatacattgtgtggtgatagaggagttcaacttagtggtggtcaaaaaca |
114 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2592283 |
caaaggctgcaaatgctcatgatttcatatcaagcttaaaagatggttatgatacactgtgtggtgatagaggagttcaacttagtggtggtcaaaaaca |
2592382 |
T |
|
| Q |
115 |
aagaattgcaatagctagagctatattgaagaatccagaggtgttgcttttggatgaagcaacaagtgcacttgatagtcagtctgagaaattagtccaa |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
2592383 |
aagaattgcaatagctagagctatattgaagaatccagaggtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaaattagtccaa |
2592482 |
T |
|
| Q |
215 |
gatgctttaga |
225 |
Q |
| |
|
||||||||||| |
|
|
| T |
2592483 |
gatgctttaga |
2592493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 2672362 - 2672152
Alignment:
| Q |
15 |
caaaggctgcaagtgctcatgattttatatcaagcttaaaagatggttatgatacattgtgtggtgatagaggagttcaacttagtggtggtcaaaaaca |
114 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2672362 |
caaaggcttcaaatgctcatgattttatatcaagcttaaaagatggttatgatactttgtgtggtgacagaggagttcaacttagtggtggtcaaaaaca |
2672263 |
T |
|
| Q |
115 |
aagaattgcaatagctagagctatattgaagaatccagaggtgttgcttttggatgaagcaacaagtgcacttgatagtcagtctgagaaattagtccaa |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2672262 |
aagaattgcaatagctagagctatattgaagaatccagaggtgttgcttttggatgaagcaacaagtgcacttgatagtcaatctgagaaattagtccaa |
2672163 |
T |
|
| Q |
215 |
gatgctttaga |
225 |
Q |
| |
|
||||||||||| |
|
|
| T |
2672162 |
gatgctttaga |
2672152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 15 - 225
Target Start/End: Original strand, 2440337 - 2440547
Alignment:
| Q |
15 |
caaaggctgcaagtgctcatgattttatatcaagcttaaaagatggttatgatacattgtgtggtgatagaggagttcaacttagtggtggtcaaaaaca |
114 |
Q |
| |
|
|||||||||||| |||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2440337 |
caaaggctgcaaatgctcacgatttcatatcaagcttaaaagatggttatgatacactgtgtggtgatagaggagttcaacttagtggtggtcaaaaaca |
2440436 |
T |
|
| Q |
115 |
aagaattgcaatagctagagctatattgaagaatccagaggtgttgcttttggatgaagcaacaagtgcacttgatagtcagtctgagaaattagtccaa |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
2440437 |
aagaattgcaatagctagagctatattgaagaatccagaggtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaaattagtccaa |
2440536 |
T |
|
| Q |
215 |
gatgctttaga |
225 |
Q |
| |
|
||||||||||| |
|
|
| T |
2440537 |
gatgctttaga |
2440547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 2596546 - 2596336
Alignment:
| Q |
15 |
caaaggctgcaagtgctcatgattttatatcaagcttaaaagatggttatgatacattgtgtggtgatagaggagttcaacttagtggtggtcaaaaaca |
114 |
Q |
| |
|
|||||||||||| |||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2596546 |
caaaggctgcaaatgctcacgatttcatatcaagcttaaaagatggttatgatacactgtgtggtgatagaggagttcaacttagtggtggtcaaaaaca |
2596447 |
T |
|
| Q |
115 |
aagaattgcaatagctagagctatattgaagaatccagaggtgttgcttttggatgaagcaacaagtgcacttgatagtcagtctgagaaattagtccaa |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
2596446 |
aagaattgcaatagctagagctatattgaagaatccagaggtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaaattagtccaa |
2596347 |
T |
|
| Q |
215 |
gatgctttaga |
225 |
Q |
| |
|
||| ||||||| |
|
|
| T |
2596346 |
gatactttaga |
2596336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 2641202 - 2640992
Alignment:
| Q |
15 |
caaaggctgcaagtgctcatgattttatatcaagcttaaaagatggttatgatacattgtgtggtgatagaggagttcaacttagtggtggtcaaaaaca |
114 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2641202 |
caaaggctgcaaatgctcatgatttcatatcaagcttacaagatggttatgatacattgtgtggtgatagaggagttcaacttagtggtggtcaaaaaca |
2641103 |
T |
|
| Q |
115 |
aagaattgcaatagctagagctatattgaagaatccagaggtgttgcttttggatgaagcaacaagtgcacttgatagtcagtctgagaaattagtccaa |
214 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| ||| |
|
|
| T |
2641102 |
aaggattgcaatagctagagctatattgaagaatccaaaggtgttacttttggatgaagcaacaagtgcacttgatagtcaatcagagaaattagtgcaa |
2641003 |
T |
|
| Q |
215 |
gatgctttaga |
225 |
Q |
| |
|
||||||||||| |
|
|
| T |
2641002 |
gatgctttaga |
2640992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 15 - 225
Target Start/End: Original strand, 2623827 - 2624037
Alignment:
| Q |
15 |
caaaggctgcaagtgctcatgattttatatcaagcttaaaagatggttatgatacattgtgtggtgatagaggagttcaacttagtggtggtcaaaaaca |
114 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2623827 |
caaaggctgcaaatgctcatgatttcatatcaagcttaaaagatggatatgacacattgtgtggtgacagaggagttcaacttagtggtggtcaaaaaca |
2623926 |
T |
|
| Q |
115 |
aagaattgcaatagctagagctatattgaagaatccagaggtgttgcttttggatgaagcaacaagtgcacttgatagtcagtctgagaaattagtccaa |
214 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2623927 |
aagaattgcaatagctagagctatattaaagaatccagatgtgttgcttttggatgaagcaacaagtgcacttgatagtcaatctgagaaattagtccaa |
2624026 |
T |
|
| Q |
215 |
gatgctttaga |
225 |
Q |
| |
|
|| ||||||| |
|
|
| T |
2624027 |
gacactttaga |
2624037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 17 - 225
Target Start/End: Original strand, 2451061 - 2451269
Alignment:
| Q |
17 |
aaggctgcaagtgctcatgattttatatcaagcttaaaagatggttatgatacattgtgtggtgatagaggagttcaacttagtggtggtcaaaaacaaa |
116 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
2451061 |
aaggctgcaaatgctcatgattttatatcaagcttaaaatatggttatgagacattgtgtggtgatagaggagttcaactttctggtggtcaaaagcaaa |
2451160 |
T |
|
| Q |
117 |
gaattgcaatagctagagctatattgaagaatccagaggtgttgcttttggatgaagcaacaagtgcacttgatagtcagtctgagaaattagtccaaga |
216 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| ||||| |
|
|
| T |
2451161 |
ggattgcaatagctagagctatattgaagaatccaaaggtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaagttagtgcaaga |
2451260 |
T |
|
| Q |
217 |
tgctttaga |
225 |
Q |
| |
|
||||||||| |
|
|
| T |
2451261 |
tgctttaga |
2451269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 191
Target Start/End: Complemental strand, 17870385 - 17870222
Alignment:
| Q |
28 |
tgctcatgattttatatcaagcttaaaagatggttatgatacattgtgtggtgatagaggagttcaacttagtggtggtcaaaaacaaagaattgcaata |
127 |
Q |
| |
|
|||||||||||| || |||| || |||||||| ||||| |||| |||||| || | |||||| |||||| || || ||||||||||| || |||||| |
|
|
| T |
17870385 |
tgctcatgatttcattgcaagtttgaaagatgggtatgagacatggtgtggggacaaaggagtgcaactttcaggggggcaaaaacaaaggatagcaata |
17870286 |
T |
|
| Q |
128 |
gctagagctatattgaagaatccagaggtgttgcttttggatgaagcaacaagtgcacttgata |
191 |
Q |
| |
|
|||||||| || |||||||||||| ||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
17870285 |
gctagagccatgttgaagaatccaaaggtgttgcttctagatgaagcaacaagtgcacttgata |
17870222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 5766109 - 5766165
Alignment:
| Q |
91 |
tcaacttagtggtggtcaaaaacaaagaattgcaatagctagagctatattgaagaa |
147 |
Q |
| |
|
||||||| |||||| ||||| |||||||||||||| ||||| || ||||||||||| |
|
|
| T |
5766109 |
tcaactttctggtggacaaaagcaaagaattgcaattgctagggcaatattgaagaa |
5766165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 5823502 - 5823562
Alignment:
| Q |
91 |
tcaacttagtggtggtcaaaaacaaagaattgcaatagctagagctatattgaagaatcca |
151 |
Q |
| |
|
||||||| |||||| ||||| |||||||||||||| || || || ||||||||||||||| |
|
|
| T |
5823502 |
tcaactttctggtggacaaaagcaaagaattgcaattgcaagggccatattgaagaatcca |
5823562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University