View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14645_high_4 (Length: 235)
Name: NF14645_high_4
Description: NF14645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14645_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 49247150 - 49247371
Alignment:
| Q |
1 |
ttagttttacaccgacatataataagatcaatctatcttttcatatcatactattataaaagtgaggatatagctaaatggtaaatttttattgcatttc |
100 |
Q |
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| T |
49247150 |
ttagttttacaccgacatataataagatcaatctatcttttcatatcatactattataaaagtgaggatatagctaaatggtaaatttttattgcatttc |
49247249 |
T |
|
| Q |
101 |
agtgtaaaactagtttacacgcaaaattcacattctttgaatcctatgcatattatgtaatatttctttatattaaccggtggtaaagtataaaactata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
49247250 |
agtgtaaaactagtttacacgcaaaattcacattctttgaatcctatgcatattatgtaatatttccttatattaaccggtggtaaagtataaaactata |
49247349 |
T |
|
| Q |
201 |
tctgcattatgatgtacttact |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
49247350 |
tctgcattatgatgtacttact |
49247371 |
T |
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