View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14645_low_1 (Length: 529)
Name: NF14645_low_1
Description: NF14645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14645_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 327
Target Start/End: Original strand, 2379079 - 2379388
Alignment:
| Q |
19 |
ccttgaacttgggtgggagcaaataaattattagctataatgtttgtta-cagaaataaaatgaacagagttggcatttagaggatataaaattaccaac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
2379079 |
ccttgaacttgggtgggagcaaataaattattagctataatttttcttaacagaaataaaatgaagagagttggcatttagagggtataaaattaccaac |
2379178 |
T |
|
| Q |
118 |
acgatatagacattgcaaaaaacttccaatgccaaacttaaatattagtataaaagtgttgtcttaatacgatatcgtatctattatcttatacttttag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2379179 |
acgatatagacattgcaaaaaacttccaatgccaaacttaaatattagtataaaagtgttgtcttaatacgatatcgtatctattatcttatacttttag |
2379278 |
T |
|
| Q |
218 |
caatgtacctatattcgtatttctttatgataatcttagaccccacaaaagattgtgatcttaacctcttttttgttaataaggaaaaacaattgtgatg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2379279 |
caatgtacctatattcgtatttctttatgataatcttagaccccacaaaagattgtgatcttaacctcttttttgttaataaggaaaaacaattgtgatg |
2379378 |
T |
|
| Q |
318 |
acgataacac |
327 |
Q |
| |
|
|||||||||| |
|
|
| T |
2379379 |
acgataacac |
2379388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University