View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14645_low_2 (Length: 373)
Name: NF14645_low_2
Description: NF14645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14645_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 218 - 358
Target Start/End: Original strand, 30004991 - 30005132
Alignment:
| Q |
218 |
tataacagtagataaatacaataagcctatccaaacatgttctaaatgtaattcttttcatgattgaatgtgtaccgataattatgagctttagtttcat |
317 |
Q |
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| T |
30004991 |
tataccagtagataagcacaataggcctatccaaacatgctccaaatgtaattcttttcatgattgaatgtgtactgataattctgagctttagtttcat |
30005090 |
T |
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| Q |
318 |
tatagtatgtacaaaatagttatcaa-tttattgccatattt |
358 |
Q |
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| T |
30005091 |
tataatatatacaaaatagttatcaattttattgccatattt |
30005132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 28110032 - 28110122
Alignment:
| Q |
25 |
caacaagaggaagagtggagcctcaagtagtgggaagaagttttcttgaaaaagtgtagaggtaatattgatataaggttcttttctacaa |
115 |
Q |
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| T |
28110032 |
caacaagaggaagaatggaacctcgagtagtgggaagaagtcttcatgaaaaagtgtagaggtaatattgatataaggttcttttctacaa |
28110122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 209
Target Start/End: Original strand, 28110121 - 28110158
Alignment:
| Q |
172 |
aatatggcttttaattcttaatttaaatatatcaccta |
209 |
Q |
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| T |
28110121 |
aatatggcttttaattcttaatttaaatatatcaccta |
28110158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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