View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14646_high_13 (Length: 281)

Name: NF14646_high_13
Description: NF14646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14646_high_13
NF14646_high_13
[»] chr2 (1 HSPs)
chr2 (1-281)||(40208369-40208649)


Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 40208649 - 40208369
Alignment:
Q  1 aaaaaagaaggatttaagagtcgttgggtcgggtagtagccgcatagtggtagggtcttgcaagcgaaatcaagctaataaggtcggcnnnnnnnn-cta 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||    
T  40208649 aaaaaagaaggatttaagagtcgttgggtcgggtagtagccgcatagtggtagggtcttgcaagcgaaatcaagctaataaggtcggcaaaaaaaaacta 40208550  T
Q  100 tatagtaaaaataattaatgtcattgttcataatacatgcgtatacaaacaaaaaactagtaatttaaaaattaatttgattggcacatttgattcctta 199  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  40208549 tatagtaaaa-taattaatgtcattgttcataatacatgcgtatacaaacaaaaaactagtaatttaaaaatgaatttgattggcacatttgattcctta 40208451  T
Q  200 aataccatatttctactcattcatcaatccacacaaaaatagtacacttcaattaagtaacacacacccaccacctcttggc 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40208450 aataccatatttctactcattcatcaatccacacaaaaatagtacacttcaattaagtaacacacacccaccacctcttggc 40208369  T

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