View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14646_high_14 (Length: 246)
Name: NF14646_high_14
Description: NF14646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14646_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 6377050 - 6376909
Alignment:
| Q |
1 |
cttcctatattcaatccttttcagtttcttgaaattgtgaggggaaaatctatggcttttgttggagactcggttggtagaaatcagatgcagtccatga |
100 |
Q |
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| T |
6377050 |
cttcctatattcaatccttttcagtttcttgaaattgtgaggggaaaatctatggcttttgttggagactcagttggtagaaatcagatgcagtccatga |
6376951 |
T |
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| Q |
101 |
tttgccttctatcaagggtaactcttcatcctctaactatgc |
142 |
Q |
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| T |
6376950 |
tttgccttctatcaagggtaactcttcatcctctaactatgc |
6376909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 6368585 - 6368454
Alignment:
| Q |
1 |
cttcctatattcaatccttttcagtttcttgaaattgtgaggggaaaatctatggcttttgttggagactcggttggtagaaatcagatgcagtccatga |
100 |
Q |
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| T |
6368585 |
cttcctatattcaatccttttcaatttcttgaaattgtgaggggaaaatctatggcttttgttggagactcagttggtagaaatcagatgcagtccatga |
6368486 |
T |
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| Q |
101 |
tttgccttctatcaagggtaactcttcatcct |
132 |
Q |
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| T |
6368485 |
tttgcctactatcaagggtaacacttcatcct |
6368454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 10 - 121
Target Start/End: Complemental strand, 6557866 - 6557755
Alignment:
| Q |
10 |
ttcaatccttttcagtttcttgaaattgtgaggggaaaatctatggcttttgttggagactcggttggtagaaatcagatgcagtccatgatttgccttc |
109 |
Q |
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| T |
6557866 |
ttcaatccttttcaatttcttgaaattgttagaggaaaatctatggcttttgttggagattctgttggtagaaatcacatgcagtcattgatttgtcttc |
6557767 |
T |
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| Q |
110 |
tatcaagggtaa |
121 |
Q |
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| T |
6557766 |
tatcaagggtaa |
6557755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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