View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14646_high_15 (Length: 243)
Name: NF14646_high_15
Description: NF14646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14646_high_15 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 60 - 243
Target Start/End: Original strand, 36099762 - 36099947
Alignment:
| Q |
60 |
tttattttattttagtagctttataaattgtaatacttggtccaaccataaagctggcttgtggttaaaattgcagcatcagnnnnnnnnnnnn-ggtga |
158 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36099762 |
tttattttatttcagtagctttgtaaattgtaatacttggtccaaccataaagctggcttgtggttaaaattgcagcatcagtttatttttttttggtga |
36099861 |
T |
|
| Q |
159 |
acattgcagtgtcaggttagtccctacct-ccctagtcgtatctattacttctcatttgcatcactttcatctagctaccaatttt |
243 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36099862 |
acattgcagtgttaggttagtccctaccttccctagtcgtatctattacttctcatttgcatcactttcatctagctaccaatttt |
36099947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 36099243 - 36099292
Alignment:
| Q |
19 |
tagtattcatcctagctagtttcaatcatatatattgaccttttatttta |
68 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36099243 |
tagtattcatcctagctagtttcaatcatatatattgaccttttatttta |
36099292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University