View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14646_high_3 (Length: 491)
Name: NF14646_high_3
Description: NF14646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14646_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 11 - 473
Target Start/End: Complemental strand, 34582385 - 34581923
Alignment:
| Q |
11 |
gaagcaaaggaagcctaaaacaatgttattctcttattcnnnnnnnnnnnnnnnntttactccctatatatgcattggtcttttcacaggtaatattcaa |
110 |
Q |
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| T |
34582385 |
gaagcaaaggaagcctaaaacaatgttattctcttattcaaaaaataaaataaaatttactccctatatatgcattggtcttttcacaggtaatagtcaa |
34582286 |
T |
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| Q |
111 |
gggagacatgggaatatgagatgggtggaaaataaacatttggcatgagccaataaaagagttcccttcaagtgtaaaaacacaattacaaaaattattt |
210 |
Q |
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| T |
34582285 |
gggagacatgggaatatgagatgggaggaaaataaacatttggcatgagccaataaaagagttcccttcaagtgtaaaaacacaattacaaaaaatattt |
34582186 |
T |
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| Q |
211 |
tgatagccactagatttgaagcataattccatcaacattcagcaaagtttgttcttccatcagacttgttgtaaactatggattgcacttattaaaagtg |
310 |
Q |
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| T |
34582185 |
tgatagccactagatttgaagcataattccatcaacattcagcaaagtttgttcttccatcagacttgttgtaaactatggattgcacttactaaaagtg |
34582086 |
T |
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| Q |
311 |
agttgctcctgtgattgaacttgatgtcattgtgattcaacctggctgttgatactatgtgttgaacttgagcttgtatgagagtaatggttggttctga |
410 |
Q |
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| T |
34582085 |
agttgctcctgtgattgaacttgatgtcattgtgattcaacctggctgttgatactatgtgttgaacttgagcttgtatgagagtaatgtttggttctaa |
34581986 |
T |
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| Q |
411 |
ttgactggtttaaagctatgagcgagaaggattggactcatcgtgagtcatcgtcattcgaca |
473 |
Q |
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| T |
34581985 |
ttgactggtttaaagctatgagcgagaaggattggactcatcgtgagttatcgtcattcgaca |
34581923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 309 - 375
Target Start/End: Complemental strand, 34585774 - 34585708
Alignment:
| Q |
309 |
tgagttgctcctgtgattgaacttgatgtcattgtgattcaacctggctgttgatactatgtgttga |
375 |
Q |
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| T |
34585774 |
tgagttgctcctgtggttgaagttgatgtcatcttgattcaagctggctcttgatactatgtgttga |
34585708 |
T |
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