View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14646_low_1 (Length: 703)
Name: NF14646_low_1
Description: NF14646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14646_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 76 - 380
Target Start/End: Original strand, 33222812 - 33223116
Alignment:
| Q |
76 |
gtcgctgtttgcatgatttccaagtgttacgcaatactcgtcaccgcaaagactgtttcccatgtgattacagacttacacagacatgtacaacactaga |
175 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33222812 |
gtcgatgtttgcatgatttccaagtgttacgcaatactcatcaccgcaaagactgtttcccatgtgattacagacttacacacacatgtacaacactaga |
33222911 |
T |
|
| Q |
176 |
aagggtcttaactagtttaaggctgtgttcattatttgagaaatttataagcataactaaaatcaaatattttcttttggttaattgattggaattgaaa |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33222912 |
aagggtcttaactagtttaaggctgtgttcattatttgagaaatttataagcataactaaaatcaaatattttcttttggttaattgattggaattgaaa |
33223011 |
T |
|
| Q |
276 |
gggaagctttattcctcctttcgattccacttcgatgctaattctgctgctatcttttcttttgcttaaggtatattagtccatatataaagaatgtaaa |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33223012 |
gggaagctttattcctcctttcgattccacttcgatgctaattctgctgctatcttttcttttgcttaaggtatattagtccatatataaagaatgtaaa |
33223111 |
T |
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| Q |
376 |
caaat |
380 |
Q |
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||||| |
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| T |
33223112 |
caaat |
33223116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 417 - 688
Target Start/End: Original strand, 33223153 - 33223424
Alignment:
| Q |
417 |
gttattttatttgatgtcattttaaatactacaattgagaaaaatataattttagactttccctttgttaaaatccatcccctccttcctgtctccttaa |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33223153 |
gttattttatttgatgtcattttaaatactacaattgagaaaaatataattttagactttccctttgttaaaatccatcccctccttcctgtctccttaa |
33223252 |
T |
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| Q |
517 |
cttcctttccatccattccattaaaaaacctcccctctccttcgttgagccaaaccgaaagatatttaaggacttggtaaacacattaccattattattg |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33223253 |
cttcctttccatccattccattaaaaaacctcccctctccttcgttgagccaaaccgaaagatatttaaggacttggtaaacacattaccattattattg |
33223352 |
T |
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| Q |
617 |
ccattaatcacaccttgattgttaacaatagatcctccaatttgcatatgcaattgaagatcgtttctttct |
688 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33223353 |
ccattaatcacaccttgattgttaacaatagatcctccaatttgcatatgcaattgaagatcgtttctttct |
33223424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 422 - 612
Target Start/End: Original strand, 33226128 - 33226323
Alignment:
| Q |
422 |
tttatttgatgtcattttaaatactacaattgagaaaaatataattttagactttccctttgttaaaatccatcccctccttcctgtctccttaac-ttc |
520 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||| || |
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| T |
33226128 |
tttatttgatatcattttaaatactacaattgagaaaaatataattttagactttccctttgttaaaatcaatcccctccttcctgt-ttcttaactttt |
33226226 |
T |
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| Q |
521 |
ctttccatcc----attccattaaaaaacct-cccctctccttcgttgagccaaaccgaaagatatttaaggacttggtaaacacattaccattatt |
612 |
Q |
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||||||||| |||||||||||| |||| ||||||||||||||||| |||||||||||||||||||| |||||| ||||||||| | |||||| |
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| T |
33226227 |
ttttccatccattaattccattaaaatacctccccctctccttcgttgacccaaaccgaaagatatttaaatacttggcaaacacattgcaattatt |
33226323 |
T |
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