View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14646_low_11 (Length: 321)
Name: NF14646_low_11
Description: NF14646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14646_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 16 - 318
Target Start/End: Original strand, 40208053 - 40208355
Alignment:
| Q |
16 |
cagtaaacaaggatgaagatcataccaccaaaagcccaagcaattcccaaaacaccaacaccatcacattctgtgttacctttgatagaggtatcacttt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40208053 |
cagtaaacaaggatgaagatcataccaccaaaagcccaagcaattcccaaaacaccaacaccatcacattctgtgttacctttgatagtggtatcacttt |
40208152 |
T |
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| Q |
116 |
gtctactataaccaataatggtcaaaacagtgatgtataggaagagaagagttgctacaaactcagctatgacagctctgtacaaagaccactttgttaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40208153 |
gtctactataaccaataatggtcaaaacagtgatgtataggaagagaagagttgctacaaactcagctatgacagctctgtacaaagaccactttgttaa |
40208252 |
T |
|
| Q |
216 |
ctcatctacatcaaacaaaggtgctggtggtggatcttggtaatccttagctgaaaattcaccaccttgttcttgaacctcaacatctttgcccatgtct |
315 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
40208253 |
ctcatctaaatcaaacaaaggtgctggtggtggatcttggtaatccttagctgaaaattcaccaccttgttcttgaacctcaacatctttgcccatgttt |
40208352 |
T |
|
| Q |
316 |
gtg |
318 |
Q |
| |
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||| |
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| T |
40208353 |
gtg |
40208355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 6e-37; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 121 - 305
Target Start/End: Complemental strand, 21793178 - 21792997
Alignment:
| Q |
121 |
ctataaccaataatggtcaaaacagtgatgtataggaagagaagagttgctacaaactcagctatgacagctctgtacaaagaccactttgttaactcat |
220 |
Q |
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| T |
21793178 |
ctataaccaataatggtcaaaacagtgacataaaggaagagaagtgttgcaacaaactcagctataagagctctataaaatgaccactttgttagctcct |
21793079 |
T |
|
| Q |
221 |
ctacatcaaacaaaggtgctggtggtggatcttggtaatccttagctgaaaattcaccaccttgttcttgaacctcaacatcttt |
305 |
Q |
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| T |
21793078 |
caacatctatcaatggtgctggaggtgggtcttggtaatcttttgctgagtatt---ctccttgttcttgaacctcaacatcttt |
21792997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 21793280 - 21793213
Alignment:
| Q |
16 |
cagtaaacaaggatgaagatcataccaccaaaagcccaagcaattcccaaaacaccaacaccatcaca |
83 |
Q |
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||||||||||| ||||| ||||| |||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
21793280 |
cagtaaacaagaatgaaaatcatgccaccaaaagcccaagcaatacccaaaattccaacaccatcaca |
21793213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 4483487 - 4483527
Alignment:
| Q |
34 |
atcataccaccaaaagcccaagcaattcccaaaacaccaac |
74 |
Q |
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| T |
4483487 |
atcattccaccaaaagcccaagcaattccctgaacaccaac |
4483527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 62
Target Start/End: Original strand, 2650119 - 2650150
Alignment:
| Q |
31 |
aagatcataccaccaaaagcccaagcaattcc |
62 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
2650119 |
aagatcataccaccaaaagcccaagcaattcc |
2650150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 206
Target Start/End: Original strand, 31460873 - 31460935
Alignment:
| Q |
144 |
agtgatgtataggaagagaagagttgctacaaactcagctatgacagctctgtacaaagacca |
206 |
Q |
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||||||||| | ||| |||| ||| ||||||||||||||||| |||||||||| |||||||| |
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| T |
31460873 |
agtgatgtacaagaacagaaaagtggctacaaactcagctatcccagctctgtagaaagacca |
31460935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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