View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14646_low_13 (Length: 300)
Name: NF14646_low_13
Description: NF14646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14646_low_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 25 - 282
Target Start/End: Complemental strand, 39228068 - 39227807
Alignment:
| Q |
25 |
tgtaagaatttttatga-gtgtgtgaaggctttagaatttg--agagttttgacacttgtaataattcgcaatcacttctctttcttgaaattactcatg |
121 |
Q |
| |
|
||||||||||||| | | ||||||||||||||| ||||||| |||||||||||| |||||||||||| |||||| | |||||||| ||| |||| | |
|
|
| T |
39228068 |
tgtaagaattttttttaagtgtgtgaaggcttttgaatttgccagagttttgacatttgtaataattcacaatcagatgtctttcttcaaactacttagt |
39227969 |
T |
|
| Q |
122 |
tctttatatatgagagaaataatagagttgttgtttgaagtttgccaactcatcaaaatcgtcttatagagcttgatcagattttgaaaacttttcctca |
221 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| | ||||||||||||||||||||||||| || || |
|
|
| T |
39227968 |
tctttatacatgagagaaataatagagttgttgttttaagtttgccaactcatgaaaatcgtcttacaaagcttgatcagattttgaaaactttgccaca |
39227869 |
T |
|
| Q |
222 |
attagatattgtcagtg-acaacactttgataaatcttttgtttcttattgaatgatttgtt |
282 |
Q |
| |
|
||| |||| |||| ||| |||| |||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
39227868 |
attggataatgtcggtgaacaatactttgataaatcttttgtttcttatataatgatatgtt |
39227807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 230 - 290
Target Start/End: Complemental strand, 39200272 - 39200211
Alignment:
| Q |
230 |
ttgtcagtga-caacactttgataaatcttttgtttcttattgaatgatttgtttgcctttg |
290 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39200272 |
ttgtcagtgaacaacactttgataaatcttttgtttcttattgaatgatttgtttgcctttg |
39200211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 21546186 - 21546018
Alignment:
| Q |
17 |
actatgtttgtaagaatttttatgagtgtgtgaaggctttagaatttga--gagttttgacacttgtaataattcgcaatcacttctctttcttgaaatt |
114 |
Q |
| |
|
|||| |||||||||||||||| | ||||| |||| |||| |||||||| ||||||| ||||||||||||||| |||| ||| |||||||||| | |
|
|
| T |
21546186 |
actaagtttgtaagaatttttttaagtgtttgaatacttttgaatttgacagagttttagcacttgtaataattcttaatctcttaa-tttcttgaaact |
21546088 |
T |
|
| Q |
115 |
actcatgtctttatatatgagagaaataatagagttgttgtttgaagtttgccaactcatcaaaatcgtc |
184 |
Q |
| |
|
| || ||| ||||||| |||||||||||||||| |||||| || || |||||||||||||||||| |
|
|
| T |
21546087 |
gcccaggtccttatataggagagaaataatagagcatgtgtttgtagattttcaactcatcaaaatcgtc |
21546018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 17651573 - 17651524
Alignment:
| Q |
52 |
gctttagaatttga--gagttttgacacttgtaataattcgcaatcactt |
99 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||| ||||||||| |
|
|
| T |
17651573 |
gctttagaatttgacagagttttgacacttataataattctcaatcactt |
17651524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 17651492 - 17651444
Alignment:
| Q |
133 |
gagagaaataatagagttgttgtttgaagtttgccaactcatcaaaatc |
181 |
Q |
| |
|
|||||||||| |||||| ||||||||| | | ||||||||||||||||| |
|
|
| T |
17651492 |
gagagaaatattagagtcgttgtttgatgctggccaactcatcaaaatc |
17651444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 29966715 - 29966670
Alignment:
| Q |
136 |
agaaataatagagttgttgtttgaagtttgccaactcatcaaaatc |
181 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
29966715 |
agaaataatagagttgttgtttgaatatttccaactcatcaaaatc |
29966670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 229
Target Start/End: Complemental strand, 21539008 - 21538913
Alignment:
| Q |
134 |
agagaaataatagagttgttgtttgaagtttgccaactcatcaaaatcgtcttataga-gcttgatcagattttgaaaacttttcctcaattagata |
229 |
Q |
| |
|
|||||||||||||| |||||| |||| |||||||| ||||||| |||| | ||| ||||||||| |||||||||||||| |||||||| |||| |
|
|
| T |
21539008 |
agagaaataatagaaccgttgtt-gaagattgccaacacatcaaattcgttcttgagaagcttgatcatattttgaaaactttgcctcaattggata |
21538913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 178
Target Start/End: Original strand, 18535162 - 18535207
Alignment:
| Q |
133 |
gagagaaataatagagttgttgtttgaagtttgccaactcatcaaa |
178 |
Q |
| |
|
|||||||||||||||||||| |||||| | |||||| ||||||||| |
|
|
| T |
18535162 |
gagagaaataatagagttgtagtttgatgattgccatctcatcaaa |
18535207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University