View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14646_low_18 (Length: 226)

Name: NF14646_low_18
Description: NF14646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14646_low_18
NF14646_low_18
[»] chr6 (3 HSPs)
chr6 (1-215)||(11191524-11191738)
chr6 (50-133)||(10084609-10084692)
chr6 (71-154)||(34374328-34374411)
[»] chr4 (1 HSPs)
chr4 (45-150)||(10494392-10494497)
[»] chr2 (1 HSPs)
chr2 (52-153)||(32162488-32162589)
[»] chr5 (1 HSPs)
chr5 (50-152)||(18251860-18251962)
[»] chr3 (1 HSPs)
chr3 (45-115)||(3064246-3064316)
[»] chr8 (1 HSPs)
chr8 (85-154)||(2688645-2688714)


Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 11191738 - 11191524
Alignment:
Q  1 ctagatttgatatgtgtttggctaagcatgaaatttagatttacaatcctggtactagatgaccaatccatgagtggtgacaatttttgtaaaataacat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11191738 ctagatttgatatgtgtttggctaagcatgaaatttagatttacaatcgtggtactagatgaccaatccatgagtggtgacaatttttgtaaaataacat 11191639  T
Q  101 aatcagattgttggtcgataactataacaacatatcgatccggtggtttcttcgacaacagctagctgttgaagatccgatgattttagtagcggggata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11191638 aatcagattgttggtcgataactataacaacatatcgatccggtggtttcttcgacaacagctagctattgaagatccgatgattttagtagcggggata 11191539  T
Q  201 caaaatcattgaatc 215  Q
    |||||||||||||||    
T  11191538 caaaatcattgaatc 11191524  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 50 - 133
Target Start/End: Complemental strand, 10084692 - 10084609
Alignment:
Q  50 tggtactagatgaccaatccatgagtggtgacaatttttgtaaaataacataatcagattgttggtcgataactataacaacat 133  Q
    |||||| |||||||||| || ||||||||||||||||||||||||||||||||||| || ||||||||||| || |||||||||    
T  10084692 tggtaccagatgaccaacccgtgagtggtgacaatttttgtaaaataacataatcaaatggttggtcgatacctgtaacaacat 10084609  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 34374328 - 34374411
Alignment:
Q  71 tgagtggtgacaatttttgtaaaataacataatcagattgttggtcgataactataacaacatatcgatccggtggtttcttcg 154  Q
    |||||||||  |||||||||||| ||| |||||||||| ||||||||||| || || |||||  ||||||||||||||||||||    
T  34374328 tgagtggtgtaaatttttgtaaagtaatataatcagatggttggtcgatatctgtagcaacacgtcgatccggtggtttcttcg 34374411  T

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Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 45 - 150
Target Start/End: Complemental strand, 10494497 - 10494392
Alignment:
Q  45 aatcctggtactagatgaccaatccatgagtggtgacaatttttgtaaaataacataatcagattgttggtcgataactataacaacatatcgatccggt 144  Q
    |||| |||||||||||||||||||| |||||||||  |||||||||||| |||||||||||||| ||||||||||| ||||| |||||  ||||||| ||    
T  10494497 aatcatggtactagatgaccaatccgtgagtggtgtgaatttttgtaaagtaacataatcagatggttggtcgatacctatagcaacacgtcgatccagt 10494398  T
Q  145 ggtttc 150  Q
    ||||||    
T  10494397 ggtttc 10494392  T

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Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 52 - 153
Target Start/End: Original strand, 32162488 - 32162589
Alignment:
Q  52 gtactagatgaccaatccatgagtggtgacaatttttgtaaaataacataatcagattgttggtcgataactataacaacatatcgatccggtggtttct 151  Q
    |||||||||||||||||||||||| |||  ||||| |||||| |||||||||||||| |||||| |||| |||||||||||  |||||||  ||||||||    
T  32162488 gtactagatgaccaatccatgagtagtgggaatttctgtaaattaacataatcagatggttggttgatacctataacaacacgtcgatccaatggtttct 32162587  T
Q  152 tc 153  Q
    ||    
T  32162588 tc 32162589  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 152
Target Start/End: Complemental strand, 18251962 - 18251860
Alignment:
Q  50 tggtactagatgaccaatccatgagtggtgacaatttttgtaaaataacataatcagattgttggtcgataactataacaacatatcgatccggtggttt 149  Q
    |||||| ||||||||||||| | |||||||  |||||||||||| ||| |||||||||| |||||| |||| || || || || |||||||| |||||||    
T  18251962 tggtacgagatgaccaatccgtaagtggtgggaatttttgtaaagtaatataatcagatggttggttgatacctgtagcatcacatcgatccagtggttt 18251863  T
Q  150 ctt 152  Q
    |||    
T  18251862 ctt 18251860  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 115
Target Start/End: Original strand, 3064246 - 3064316
Alignment:
Q  45 aatcctggtactagatgaccaatccatgagtggtgacaatttttgtaaaataacataatcagattgttggt 115  Q
    |||| ||||||||| |||||||||| ||||| |||  |||||||||||| ||||||||||| || ||||||    
T  3064246 aatcgtggtactaggtgaccaatccttgagttgtggaaatttttgtaaagtaacataatcaaatggttggt 3064316  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 154
Target Start/End: Complemental strand, 2688714 - 2688645
Alignment:
Q  85 ttttgtaaaataacataatcagattgttggtcgataactataacaacatatcgatccggtggtttcttcg 154  Q
    ||||||||| ||||||||||  || ||||||||||| || || |||||  ||||||| ||||||||||||    
T  2688714 ttttgtaaagtaacataatcgtatggttggtcgatatctgtagcaacacgtcgatccagtggtttcttcg 2688645  T

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