View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14646_low_2 (Length: 563)
Name: NF14646_low_2
Description: NF14646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14646_low_2 |
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| [»] scaffold1221 (2 HSPs) |
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Alignment Details
Target: scaffold1221 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: scaffold1221
Description:
Target: scaffold1221; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 11 - 486
Target Start/End: Original strand, 1037 - 1510
Alignment:
| Q |
11 |
tagataattctaaaggtaaccaactcttccctacacctgaaatgtttatcagaagaccctgttaaaaagaaaacagtcataacacatgcatacttgcctg |
110 |
Q |
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| T |
1037 |
tagaaaattctaaaggtaaccaactcttacccacacctgaaatgtttatcagaagaccctgttaaaaagaaaacagtcataacacatgcatacttgcttg |
1136 |
T |
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| Q |
111 |
catcatagtagaaagttggatgaaattttgaaacaaaatccaatttatcaccaaaaaataaaatttcaggtttgaattctaaaagggaattggatatcaa |
210 |
Q |
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| T |
1137 |
catcatagtagaaagttgtatgaaattttgaaacaaaatccaatttatcaccaaaaa-tgaaatttcaggtttgaattctaaaagggaattggatatcaa |
1235 |
T |
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| Q |
211 |
gaaagaaaatggaaatttgtgatttatacaaaaatgaggttgaaaataagagcagtatatggttcagatcataaaccccttcaacacccaaacgaaaacc |
310 |
Q |
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| T |
1236 |
gatagaaaatggaaatttgtgatttatacaaaaa-gagtttgaaaataagagcagtatatggttcagatcataaaccccttcaacacccaaacgaaaaca |
1334 |
T |
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| Q |
311 |
caaccatattatagtacaacaaaaatccaaagtgaagaagacatctaacttaaccatatgttcttaaggtgagaactataaaacttatctagagaaggtg |
410 |
Q |
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| T |
1335 |
caaccatattatagtacaacaaaaatccaaagtgaagaagacatctaacttaaccatatgttctcaaggtgagaactataaaacttatctagagaaggtg |
1434 |
T |
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| Q |
411 |
acatcatcaacaatagtttctgtcaatctatctcatgttgggtgggcataacaccatgataatgtcaataaatttt |
486 |
Q |
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| T |
1435 |
acatcatcaacaatagtttctgtcaatctatctcatgttgggtgggcataacaccatgatagtgtcagtaaatttt |
1510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1221; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 478 - 548
Target Start/End: Original strand, 1838 - 1908
Alignment:
| Q |
478 |
ataaatttttaaagagaaaaaaggctacgcnnnnnnngtaatgcaaaattaagtagaatatgtttcttttt |
548 |
Q |
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| T |
1838 |
ataaatttttaaagagaaaaaaggctacgcttttttggtaatgcaaaattaagtagaatatgtttcttttt |
1908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 106 - 263
Target Start/End: Original strand, 14566555 - 14566716
Alignment:
| Q |
106 |
gcctgcatcatagtagaaagttggatgaaattttgaaacaaaa-----tccaatttatcaccaaaaaataaaatttcaggtttgaattctaaaagggaat |
200 |
Q |
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| T |
14566555 |
gcctgcatcataatagaaagttaaatgaaattttgaaacaaaaagcaatccaatttatcaccaaaaa-tgaaatttcaaatttgaagtctaagagggaat |
14566653 |
T |
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| Q |
201 |
tggatatcaagaaagaaaatggaaatttgtgatttatacaaaaatgaggttgaaaataagagc |
263 |
Q |
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| T |
14566654 |
tggatatcaagatagaaaatggaaatttgtgatttatacaaaaatgagtttgaaaataagagc |
14566716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 336 - 466
Target Start/End: Complemental strand, 30702443 - 30702316
Alignment:
| Q |
336 |
tccaaagtgaagaagacatctaacttaaccatatgttcttaaggtgagaactataaaacttatctagagaaggtgacatcatcaacaatagtttctgtca |
435 |
Q |
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| T |
30702443 |
tccaaagtcaaaaagacctctgactatacaatttgttctcaaggtgagaactatgaaatccatctagagaatg---cctcatcatcaatggtttccgtca |
30702347 |
T |
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| Q |
436 |
atctatctcatgttgggtgggcataacacca |
466 |
Q |
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| T |
30702346 |
atctatttcaagttgggtaggcataatacca |
30702316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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