View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14646_low_3 (Length: 521)
Name: NF14646_low_3
Description: NF14646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14646_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 4e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 184 - 502
Target Start/End: Original strand, 22787356 - 22787660
Alignment:
| Q |
184 |
aaattgtgaggaccccaatgacgaaaattgattagtggccaagaacttaacataacaacacaagtttagatacttgaattcatgaattattagagctaaa |
283 |
Q |
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| T |
22787356 |
aaattgtgaggaccccaatgacaaaaattgattagtggccaagaacttaacataacaacacaagtttagatacttgaattcattaattattagaactaaa |
22787455 |
T |
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| Q |
284 |
tttgatgtatattgtatctaaaaaagagttgtcttagatattatcaacctacgatatgtatctctataacacaattatgcaagatatatattnnnnnnnc |
383 |
Q |
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| T |
22787456 |
tttgatgtttattgtatctaaaaaagagttgtcttaggtatcatcaacctacgatatgtatctctataacaaaattatgcaag--atatattaaaaaaac |
22787553 |
T |
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| Q |
384 |
tgatcattggccatgtgcaactgtaatcaaaac-aaataataatgtgaagatgnnnnnnnnnnnnnnngacgccacttaaagaccaatatttatcaagag |
482 |
Q |
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| T |
22787554 |
ttatcattggccatgtgcaactataatcaaaacaaaataataatgtgaatatg-------------ttgtcgccactcaaagaccaatatttatcaagag |
22787640 |
T |
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| Q |
483 |
caacaattacaggttgagtg |
502 |
Q |
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| T |
22787641 |
caacaattacaggttgagtg |
22787660 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 43 - 85
Target Start/End: Complemental strand, 33632945 - 33632903
Alignment:
| Q |
43 |
attccccacgcctaactcgtctcctacactaatactagaaaga |
85 |
Q |
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| T |
33632945 |
attcccaacgcctaactcgtttcctaaactaatactagaaaga |
33632903 |
T |
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