View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14646_low_6 (Length: 417)
Name: NF14646_low_6
Description: NF14646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14646_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 51 - 406
Target Start/End: Complemental strand, 10688446 - 10688099
Alignment:
| Q |
51 |
aagaagtgaatgatgatgaagaaggtggacgaagtgaatgaaaattcatcatttttctcttttggagtttttagatagtgaacccagaatgtgaatctga |
150 |
Q |
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| T |
10688446 |
aagaagtgaatgatgatgaagaaggtggacgaagtgaatgaaaattcatcatttttctcttttggagtttttaggtagtgaacccagaatgtgaatctga |
10688347 |
T |
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| Q |
151 |
ctgatcaaaaagtagtatttataggcatagaaaattattactattactttgagaaaacatttttcagaaaagttggggaatgaggaaagtgtatggaaaa |
250 |
Q |
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| T |
10688346 |
ttgatcaaaaagtagtatttataggcatagaaaattattactattactatgagaaaacatttttcagaaaagttggggaat--------tgtatggaaaa |
10688255 |
T |
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| Q |
251 |
tatacaaggagaataattgtgcaagtgttgtggtattggcaatttccaaagaacttgaactgaggttcttgatttggcaatttccaatattcatagatcc |
350 |
Q |
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| T |
10688254 |
tatacaaggagaataattgtgcaagtgttgtgggattggcaatttccaaagaacttgaactgaggttcttgatttggcaatttccaatattcatagatgc |
10688155 |
T |
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| Q |
351 |
ttgatcaactcactgtttctacacataggaattcatgtcagcttgaatgttctatt |
406 |
Q |
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| T |
10688154 |
ttgatcaactcattatttctagatataggaattcatgtcagcttgaatgttctatt |
10688099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 206 - 406
Target Start/End: Complemental strand, 5445011 - 5444810
Alignment:
| Q |
206 |
aacatttttcagaaaagttggggaatgaggaaagtgtatggaaaatatacaaggagaataattgtgcaagtgttgtggtattggcaatttccaaagaact |
305 |
Q |
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| T |
5445011 |
aacatttttcagaaaagttggggaatgaggaaggagtatggaaaatatacacggagaataattgggcaagtgttgagggattggcaatttccaaagaact |
5444912 |
T |
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| Q |
306 |
tgaactgaggtt-cttgatttggcaatttccaatattcatagatccttgatcaactcactgtttctacacataggaattcatgtcagcttgaatgttcta |
404 |
Q |
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| T |
5444911 |
tggactgaggttgagggatttggcaatttcccatattcattgatccttgatcaactcattatttctacacataggaattcatgtcagcttgaatgtccta |
5444812 |
T |
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| Q |
405 |
tt |
406 |
Q |
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| T |
5444811 |
tt |
5444810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 335 - 400
Target Start/End: Original strand, 5441376 - 5441441
Alignment:
| Q |
335 |
caatattcatagatccttgatcaactcactgtttctacacataggaattcatgtcagcttgaatgt |
400 |
Q |
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| T |
5441376 |
caatattcattgatccttgatcaactcattatttctacacattggaattcatgtcagcttgaatgt |
5441441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 5445069 - 5445016
Alignment:
| Q |
126 |
tagtgaacccagaatgtgaatctgactgatcaaaaagtagtatttataggcata |
179 |
Q |
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| T |
5445069 |
tagtgaaccgagaatatggatctgattgatcaaaaggtagtttttataggcata |
5445016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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