View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14646_low_7 (Length: 399)
Name: NF14646_low_7
Description: NF14646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14646_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 48 - 376
Target Start/End: Complemental strand, 55695613 - 55695299
Alignment:
| Q |
48 |
tataatttattcaaaccaggagaaatacataatgaccaaacaagcttcagtggctatagctccttatataataataaatccgtaaagccatacccataga |
147 |
Q |
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| T |
55695613 |
tataatttattcaaaccaggagaaatacataatgaccaaacaagcttcagtggctatagctccttatataataataaatccgtaaagccatacccatag- |
55695515 |
T |
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| Q |
148 |
cttaccttcacaataagatcaatgacaaaagaaaccaaacaaataaagcggaaaagcttctcatcaactttgacatgtgaaaaaagtagtttcttccact |
247 |
Q |
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| T |
55695514 |
--taccttcacaataagatcaatgacaaaagaagccaaacaaataaagcagaaaagcttctcatcaactttgacatgtgaaaaaagtag--------ac- |
55695426 |
T |
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| Q |
248 |
ggtacccatagactcctttctgatcactttttatgcttctgtggtggttacttcttccactggtactgctatggctgctgattctgtttcagtagtttct |
347 |
Q |
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| T |
55695425 |
--aacaactagactcctttctgatcactttttatgcttctgtggtggttacttcttccactggtgctgctattgctgctgattctatttcagtagtttct |
55695328 |
T |
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| Q |
348 |
ttagcctcttcagctgatacttcctcttt |
376 |
Q |
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| T |
55695327 |
ttagcctcttcagttgatacttcctcttt |
55695299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 323 - 382
Target Start/End: Complemental strand, 55695280 - 55695221
Alignment:
| Q |
323 |
tgctgattctgtttcagtagtttctttagcctcttcagctgatacttcctctttcacttc |
382 |
Q |
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| T |
55695280 |
tgctgattctgtttcagtagtttctttagcctcttcagctgatacttcctctttcacttc |
55695221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 113 - 231
Target Start/End: Original strand, 35804198 - 35804319
Alignment:
| Q |
113 |
atataataataaatccgtaaagccatacccatagacttaccttcacaataagatcaatgacaaaa---gaaaccaaacaaataaagcggaaaagcttctc |
209 |
Q |
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|||||||||||| || ||||||||||||||| ||||||||||||| |||||||||||||| |||| |||||||||||||||| |||||||||||| |
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| T |
35804198 |
atataataataattctgtaaagccatacccaaagacttaccttcaaaataagatcaatgaaaaaaaacaaaaccaaacaaataaaatagaaaagcttctc |
35804297 |
T |
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| Q |
210 |
atcaactttgacatgtgaaaaa |
231 |
Q |
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| T |
35804298 |
atcaactttgacttgtgaaaaa |
35804319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 35804087 - 35804127
Alignment:
| Q |
48 |
tataatttattcaaaccaggagaaatacataatgaccaaac |
88 |
Q |
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| T |
35804087 |
tataatttattcaaaccagaagaaatacataatgaccaaac |
35804127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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