View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14647_low_3 (Length: 294)

Name: NF14647_low_3
Description: NF14647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14647_low_3
NF14647_low_3
[»] chr8 (3 HSPs)
chr8 (19-103)||(44561349-44561441)
chr8 (160-226)||(44561434-44561500)
chr8 (221-283)||(44572472-44572534)


Alignment Details
Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 44561349 - 44561441
Alignment:
Q  19 tgctcatattatatgcattgtactttc--------ttggtcatgggatcggtcgagttcattcaattcagttggaaagaagattaagaacaaa 103  Q
    |||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44561349 tgctcatattatatgcattgtactttcaacaaggtttggtcatgggatcggtcgagttcattcaattcagttggaaagaagattaagaacaaa 44561441  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 160 - 226
Target Start/End: Original strand, 44561434 - 44561500
Alignment:
Q  160 agaagaaattacaattagttttacgtatgtttcaggagcaattgaaggattttaaaatgataatagt 226  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44561434 agaacaaattacaattagttttacgtatgtttcaggagcaattgaaggattttaaaatgataatagt 44561500  T

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Target: chr8; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 221 - 283
Target Start/End: Original strand, 44572472 - 44572534
Alignment:
Q  221 aatagtatatattaaactataccatatacaaaagtatcataatacaggaaggattaaagaatt 283  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  44572472 aatagtatatattaaactataccatatataaaagtatcataatacaggaaggattaaagaatt 44572534  T

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