View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14647_low_5 (Length: 241)
Name: NF14647_low_5
Description: NF14647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14647_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 11 - 226
Target Start/End: Original strand, 8755234 - 8755449
Alignment:
| Q |
11 |
gtactgtaaagaggatcatgaatgttgacattgaagccgcggggatttcaaagttcgaaaatatgttacggttcatggtggatgcttccaatacagaaaa |
110 |
Q |
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| T |
8755234 |
gtactgtaaagaggatcatgaatgttgacattgaagccgcggggatttcaaagttcgaaaatatgttacggttcatggtggatgcttccaatacagaaaa |
8755333 |
T |
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| Q |
111 |
tgttccttgactaaaatttatagacattatcattcctgttgtccaaattggaatgattttgataattgctttgaatgcttctacttgatctattgtgcaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8755334 |
tgttccttgactaaaatttatagacattatcattcctgttgtccaaattggaatgattttgataattgctttgaatgcttctacttgatctattgtgcaa |
8755433 |
T |
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| Q |
211 |
aggctccattgatttt |
226 |
Q |
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|||||||||||||||| |
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| T |
8755434 |
aggctccattgatttt |
8755449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 226
Target Start/End: Original strand, 8747900 - 8748106
Alignment:
| Q |
20 |
agaggatcatgaatgttgacattgaagccgcggggatttcaaagttcgaaaatatgttacggttcatggtggatgcttccaatacagaaaatgttccttg |
119 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| | || | |||||||||||| |
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| T |
8747900 |
agaggaccatgaatgttgacattgaagccgcggggatttcaaagttcgaagttatgtggcggttcatggtggatgcttctagtatattaaatgttccttg |
8747999 |
T |
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| Q |
120 |
actaaaatttatagacattatcattcctgttgtccaaattggaatgattttgataattgctttgaatgcttctacttgatctattgtgcaaaggctccat |
219 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8748000 |
actcaaatttatagacattatcattcctgttgtccaaattggaatgattttgataattgctttgaatgcttctacttgatctattgtgctaaggctccat |
8748099 |
T |
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| Q |
220 |
tgatttt |
226 |
Q |
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|| |||| |
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| T |
8748100 |
tggtttt |
8748106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 11 - 228
Target Start/End: Original strand, 8765773 - 8765990
Alignment:
| Q |
11 |
gtactgtaaagaggatcatgaatgttgacattgaagccgcggggatttcaaagttcgaaaatatgttacggttcatggtggatgcttccaatacagaaaa |
110 |
Q |
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|||| |||||||| | ||||||||||| || |||||| ||||||||||| ||||||||| |||| |||||||||| ||||||||| | |||| |||| |
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| T |
8765773 |
gtacagtaaagagaaccatgaatgttgccactgaagctgcggggatttcgaagttcgaagtaatgtggcggttcatggaggatgcttctagtacataaaa |
8765872 |
T |
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| Q |
111 |
tgttccttgactaaaatttatagacattatcattcctgttgtccaaattggaatgattttgataattgctttgaatgcttctacttgatctattgtgcaa |
210 |
Q |
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|||||||||||| | ||| ||| ||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
8765873 |
tgttccttgactcatattaatatacattatcattcctgttatccaaattgggatgattttgatcattgctttgaatgcttctacttgatctattgtgcaa |
8765972 |
T |
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| Q |
211 |
aggctccattgattttga |
228 |
Q |
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|||||||||| |||||| |
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| T |
8765973 |
tggctccattggttttga |
8765990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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