View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14648_high_5 (Length: 295)
Name: NF14648_high_5
Description: NF14648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14648_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 9 - 279
Target Start/End: Original strand, 18231223 - 18231493
Alignment:
| Q |
9 |
aatattcaacgggaaaagtaagtattttctatccttagattgaatcaactaactat---tcttgcatctcgaaaggtttaactaaagaaaaatgttattt |
105 |
Q |
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| T |
18231223 |
aatattcaacgggaaaagtaagtattttctatccttagattgaatcaactaactatatttcttgcatctcgaaaggtttaactaaagaaaaatgttattt |
18231322 |
T |
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| Q |
106 |
tgacttagacacgcgtatgcacatatcatgcatatttgaaacaacgcgtttttcacacgatactattcatttcttcattacatggtcaatgctcaataga |
205 |
Q |
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| T |
18231323 |
tgacatagacacgcgtatgcacatat---gcatatttgaaacaacgcgtttttcacacgatactattcatttcttcattacatggtcaatactcaataga |
18231419 |
T |
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| Q |
206 |
attcaaatatatgtttcattacgtttagtagatgcnnnnnnnggtggtgtccgagattcgatctccaaaccttg |
279 |
Q |
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| T |
18231420 |
attcaaatatatgtttcattacgtttaggagatgatttttttggtggtgtccgagattcgatctccaaaccttg |
18231493 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 31551664 - 31551739
Alignment:
| Q |
22 |
aaaagtaagtattttctatccttagattgaatcaactaactattcttgcatctcgaaaggtttaactaaagaaaaa |
97 |
Q |
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| T |
31551664 |
aaaagaaagtattctatatgctttgattgaatcaactcattattcttgcatctctaaagatataaataaagaaaaa |
31551739 |
T |
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