View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14648_low_1 (Length: 587)
Name: NF14648_low_1
Description: NF14648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14648_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 18 - 564
Target Start/End: Complemental strand, 56314010 - 56313473
Alignment:
| Q |
18 |
gaaattgatttggtaacatcggttgcatcagcaatgtagacaaatgattcggatttggatgattgagatgtgggttttgaacattgtaacaatattgctg |
117 |
Q |
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| T |
56314010 |
gaaattgatttggtaacattggttgcatcagcaatgtagacaaatgattcggatttggatgattgagatgtgggttttgaacattgtaacaatattgctg |
56313911 |
T |
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| Q |
118 |
ttgttgataacttacaagcctattgagatcatccatcatcattgcagcactggtagcagtattggaacagctcactgannnnnnnnnnnnnnnnnaagct |
217 |
Q |
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| T |
56313910 |
ttgttgataacttacaagcctattgagatcatccatcatcattgcagcactggtagcagtattggaacagctcactg------ctgctgctgctgaagct |
56313817 |
T |
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| Q |
218 |
gagacagggaaaatggcgcccccgccgccaccacaagcggagactaacagagagtttcccgcagcagcatattgtactaggtgcctaggttgatgctgct |
317 |
Q |
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| T |
56313816 |
gagacagggaaaatgacgcccccgccgccacca---gcggagactaacagagagtttcccgcagctgaatattgtactaggtgcctaggttgatgctgct |
56313720 |
T |
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| Q |
318 |
gctgc---atcatcatcaatccttcttcctcttctgaacggtaattagtaggaggaggagtattgctatacttggaaagcccaagagttgttgtgacatg |
414 |
Q |
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||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56313719 |
gctgctgcataatcatcaatccttcttcttcttctgaacggtaattagtaggaggaggagtattgctatacttggaaagcccaagagttgttgtgacatg |
56313620 |
T |
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| Q |
415 |
atctgaattaccgccgctactgcttccttccattttgttaactatgtgatcatcaattgtctttggtgattgtccaacaacaaatcccattcccaatatt |
514 |
Q |
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| T |
56313619 |
atctgaattaccgccgctactgcttccttccattttgttaactatgtgatcatcaattgtctttggtgattgtccaacaacaaatcccattcccaata-- |
56313522 |
T |
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| Q |
515 |
ttttcattttgctgcttattcttgtctgaatgtgaagcagtagtacctct |
564 |
Q |
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| T |
56313521 |
-tttcattttgctgcttattcttgtctgaatgtgaagcagtagtacctct |
56313473 |
T |
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