View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14648_low_2 (Length: 450)
Name: NF14648_low_2
Description: NF14648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14648_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 35519974 - 35520406
Alignment:
| Q |
1 |
aattagggatgtaatagacatcatgtagaataagagatggagaaagttgcacggtgcctgaaattgtggcaatggttttctggccattaggtaagacata |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
35519974 |
aattagggatgtaatagacatcatgtagaataagggattgagaaagttgcacggtgcctgaaattgtggcaatggttttatggccattaggtaagacata |
35520073 |
T |
|
| Q |
101 |
aacacatgagaaattgtgtgataagagataaagttatgtaaggaatgtgtgatatggtcaatggcaccagaatctacaacccagtggtcaaagatcttac |
200 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35520074 |
aacacatgagaaattgtgtgataagagacaaaattatgtaaggaatgtgtgatatggtcaatggcaccagaatctacaacccagtggtcagagatcttac |
35520173 |
T |
|
| Q |
201 |
caaaagtgggagaagagaatgaacttaaagctgcaggattagatataacagagttgatagaaggttgattgggactaggatttgagggtgtcgatgaagc |
300 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||| | |||||||| |
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| T |
35520174 |
caaaagtgggagaagaggatgaacttaaagctgcaggattagatataacagagttgacaaaaggttgattgggactaggattcgagggtcttgatgaagc |
35520273 |
T |
|
| Q |
301 |
ttgtaatgttgaatgctgtagaagctgtaaaatatgattataccgctcttgaatggtgttgatagtagctggagtgggattggtgtggctttccctttgt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
35520274 |
ttgtaatgttgaatgctgtagaagctgtaaaatatgattataccgctcttgaatggtgttgatagtagctggagtgcgattggtgtggctttctctttgt |
35520373 |
T |
|
| Q |
401 |
gggccattagaagcagtagcagcaacatttatt |
433 |
Q |
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| T |
35520374 |
gggccattagaagcagtagcagcaacatttatt |
35520406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 33766125 - 33765692
Alignment:
| Q |
1 |
aattagggatgtaatagacatcatgtagaataagagatggagaaagttgcacggtgcctgaaattgtggcaatggttttctggccattaggtaag-acat |
99 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||| |
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| T |
33766125 |
aattagggatgtaatagacatcatgtagaataagggatggagaaagttgcacggtgcctgaaattgtggcaatggttttctagccattagataaggacat |
33766026 |
T |
|
| Q |
100 |
aaacacatgagaaattgtgtgataagagataaagttatgtaaggaatgtgtgatatggtcaatggcaccagaatctacaacccagtggtcaaagatctta |
199 |
Q |
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||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
33766025 |
aaacacaggagaaattgtgtgataagagacaaagttatgtaaggaatgtgtgatatggtcagtggcaccagaatctacaacccagtggtcagagatctta |
33765926 |
T |
|
| Q |
200 |
ccaaaagtgggagaagagaatgaacttaaagctgcaggattagatataacagagttgatagaaggttgattgggactaggatttgagggtgtcgatgaag |
299 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||| ||||||| |
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| T |
33765925 |
ccaaaagtgggagaagaggatgaacttaaagctgcaggattagatataacagagttgacagaaggttgatttggactaggattcgagggtgttgatgaag |
33765826 |
T |
|
| Q |
300 |
cttgtaatgttgaatgctgtagaagctgtaaaatatgattataccgctcttgaatggtgttgatagtagctggagtgggattggtgtggctttccctttg |
399 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| | ||| |
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| T |
33765825 |
cttgtaatgttgaatgttgtagaagctgtaaaatctgattatactgctcttgaatggtgttgatagtagctggagtgggattggcgtggctttctcattg |
33765726 |
T |
|
| Q |
400 |
tgggccattagaagcagtagcagcaacatttatt |
433 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| |
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|
| T |
33765725 |
tggggcattagaagcagtagcagcaacatttatt |
33765692 |
T |
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