View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14648_low_4 (Length: 338)

Name: NF14648_low_4
Description: NF14648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14648_low_4
NF14648_low_4
[»] chr6 (1 HSPs)
chr6 (15-327)||(723558-723872)
[»] chr8 (6 HSPs)
chr8 (270-318)||(27868335-27868383)
chr8 (125-207)||(7755181-7755263)
chr8 (270-308)||(11637189-11637227)
chr8 (270-319)||(8418311-8418360)
chr8 (270-319)||(27973695-27973744)
chr8 (270-319)||(28030964-28031013)
[»] chr4 (6 HSPs)
chr4 (249-309)||(49401684-49401744)
chr4 (270-321)||(35998124-35998175)
chr4 (270-307)||(52677052-52677089)
chr4 (253-313)||(8759811-8759871)
chr4 (246-286)||(39979805-39979845)
chr4 (131-207)||(40021071-40021146)
[»] scaffold0086 (1 HSPs)
scaffold0086 (270-321)||(5867-5918)
[»] chr3 (2 HSPs)
chr3 (270-321)||(29858872-29858923)
chr3 (273-309)||(32977809-32977845)
[»] chr7 (2 HSPs)
chr7 (251-321)||(18731469-18731539)
chr7 (245-286)||(49100544-49100585)
[»] scaffold0045 (1 HSPs)
scaffold0045 (245-286)||(26346-26387)
[»] chr5 (1 HSPs)
chr5 (232-321)||(4475257-4475346)
[»] chr1 (5 HSPs)
chr1 (246-287)||(5563039-5563080)
chr1 (254-314)||(25869716-25869776)
chr1 (272-309)||(28706643-28706680)
chr1 (276-317)||(40061864-40061905)
chr1 (253-309)||(12267651-12267707)
[»] chr2 (1 HSPs)
chr2 (253-321)||(9724910-9724978)


Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 15 - 327
Target Start/End: Complemental strand, 723872 - 723558
Alignment:
Q  15 aaaatcaactaggatttttaggaagcttatcaaccactgagttaattgtatactcgtataacataataccttacctttgttccannnnnnnnnnnnaagg 114  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||            ||||    
T  723872 aaaaccaactaggatttttaggaagcctatcaaccactgagttaattgtatactcatataacataataccttacctttgttccatttttcttttttaagg 723773  T
Q  115 gattatctttgttccataataagagactcatttgtaaaaacatatattattctaaaataattggcacatttcatttttcaatgcaatattaatannnnnn 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||           
T  723772 gattatctttgttccataataagagactcatttgtaaaaacatatattattctaaaataattggctcatttcatttttcaatgcaatattaatgatattt 723673  T
Q  215 nnnn--caattatacactcttaatactcattctatcatttccaatgcaatatcgtccactttacatttatgataaagataaatgtatcaatacttgataa 312  Q
          ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| || ||||||||||||    
T  723672 ttttttcaattatacactcttaatactcattctatcatttccaatgcaatatcatccactttacatttatgataaagatgaatgcattaatacttgataa 723573  T
Q  313 gaacactcagatccg 327  Q
    |||||||||||||||    
T  723572 gaacactcagatccg 723558  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 27868383 - 27868335
Alignment:
Q  270 actttacatttatgataaagataaatgtatcaatacttgataagaacac 318  Q
    ||||| |||||||||||| |||||||| |||||||||||| ||||||||    
T  27868383 actttgcatttatgataatgataaatggatcaatacttgacaagaacac 27868335  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 207
Target Start/End: Complemental strand, 7755263 - 7755181
Alignment:
Q  125 gttccataataagagactcatttgtaaaaacatatattattctaaaataattggcacatttcatttttcaatgcaatattaat 207  Q
    ||||||||||||| || |  |||||||||| | |||||||  |||||||| || | ||||||| |||| ||||||||||||||    
T  7755263 gttccataataagtgagtattttgtaaaaaaaaatattatcgtaaaataactgactcatttcaatttttaatgcaatattaat 7755181  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 308
Target Start/End: Original strand, 11637189 - 11637227
Alignment:
Q  270 actttacatttatgataaagataaatgtatcaatacttg 308  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  11637189 actttacatttatgataaagaataatgtatcaatacttg 11637227  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 319
Target Start/End: Complemental strand, 8418360 - 8418311
Alignment:
Q  270 actttacatttatgataaagataaatgtatcaatacttgataagaacact 319  Q
    |||||||||||||||||||||  |||| |||||||||||| || ||||||    
T  8418360 actttacatttatgataaagaataatgcatcaatacttgacaaaaacact 8418311  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 319
Target Start/End: Complemental strand, 27973744 - 27973695
Alignment:
Q  270 actttacatttatgataaagataaatgtatcaatacttgataagaacact 319  Q
    ||||| |||||||||||| | |||||| |||||||||||| |||||||||    
T  27973744 actttgcatttatgataatggtaaatggatcaatacttgacaagaacact 27973695  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 319
Target Start/End: Complemental strand, 28031013 - 28030964
Alignment:
Q  270 actttacatttatgataaagataaatgtatcaatacttgataagaacact 319  Q
    ||||| |||||||||||| | |||||| |||||||||||| |||||||||    
T  28031013 actttgcatttatgataatggtaaatggatcaatacttgacaagaacact 28030964  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 309
Target Start/End: Original strand, 49401684 - 49401744
Alignment:
Q  249 atttccaatgcaatatcgtccactttacatttatgataaagataaatgtatcaatacttga 309  Q
    ||||||||| ||||||  || ||||||||||||| |||||||  |||||||||||||||||    
T  49401684 atttccaattcaatatattctactttacatttataataaagaacaatgtatcaatacttga 49401744  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 270 - 321
Target Start/End: Complemental strand, 35998175 - 35998124
Alignment:
Q  270 actttacatttatgataaagataaatgtatcaatacttgataagaacactca 321  Q
    |||||||||||||||||||||  |||||| |||||||||||||  |||||||    
T  35998175 actttacatttatgataaagaagaatgtaccaatacttgataaagacactca 35998124  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 307
Target Start/End: Complemental strand, 52677089 - 52677052
Alignment:
Q  270 actttacatttatgataaagataaatgtatcaatactt 307  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  52677089 actttacatttatgataatgataaatgcatcaatactt 52677052  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 313
Target Start/End: Original strand, 8759811 - 8759871
Alignment:
Q  253 ccaatgcaatatcgtccactttacatttatgataaagataaatgtatcaatacttgataag 313  Q
    ||||| ||||||  || ||||| ||||||||||||||| ||||| ||||||| ||||||||    
T  8759811 ccaattcaatatattctactttgcatttatgataaagaaaaatgcatcaatagttgataag 8759871  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 39979805 - 39979845
Alignment:
Q  246 atcatttccaatgcaatatcgtccactttacatttatgata 286  Q
    |||||||||||| ||||||  ||||||||||||||||||||    
T  39979805 atcatttccaattcaatatattccactttacatttatgata 39979845  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 207
Target Start/End: Complemental strand, 40021146 - 40021071
Alignment:
Q  131 taataagagactcatttgtaaaaacatatattattctaaaataattggcacatttcatttttcaatgcaatattaat 207  Q
    ||||||| ||||| |||||||||| | ||||| | ||||||||| || | ||||||| || ||||||||||||||||    
T  40021146 taataagtgactcttttgtaaaaaaa-atattgtcctaaaataactgacccatttcagttctcaatgcaatattaat 40021071  T

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Target: scaffold0086 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 270 - 321
Target Start/End: Original strand, 5867 - 5918
Alignment:
Q  270 actttacatttatgataaagataaatgtatcaatacttgataagaacactca 321  Q
    |||||||||||||||||||||  |||| |||||||||||||||  |||||||    
T  5867 actttacatttatgataaagagcaatgcatcaatacttgataaagacactca 5918  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 270 - 321
Target Start/End: Complemental strand, 29858923 - 29858872
Alignment:
Q  270 actttacatttatgataaagataaatgtatcaatacttgataagaacactca 321  Q
    |||||||||||||||||||||  |||||| |||||||||| || ||||||||    
T  29858923 actttacatttatgataaagaagaatgtaccaatacttgacaaaaacactca 29858872  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 32977845 - 32977809
Alignment:
Q  273 ttacatttatgataaagataaatgtatcaatacttga 309  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  32977845 ttacatttatgataaagaaaaatgcatcaatacttga 32977809  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 321
Target Start/End: Original strand, 18731469 - 18731539
Alignment:
Q  251 ttccaatgcaatatcgtccactttacatttatgataaagataaatgtatcaatacttgataagaacactca 321  Q
    ||||||| ||||||  || |||||||||||||||||||||  |||  |||||||||||||||  |||||||    
T  18731469 ttccaattcaatatattctactttacatttatgataaagaagaattcatcaatacttgataaagacactca 18731539  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 286
Target Start/End: Complemental strand, 49100585 - 49100544
Alignment:
Q  245 tatcatttccaatgcaatatcgtccactttacatttatgata 286  Q
    ||||||||||||| ||||||  ||||||||||||||||||||    
T  49100585 tatcatttccaattcaatatattccactttacatttatgata 49100544  T

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Target: scaffold0045 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 286
Target Start/End: Original strand, 26346 - 26387
Alignment:
Q  245 tatcatttccaatgcaatatcgtccactttacatttatgata 286  Q
    ||||||||||||| ||||||  ||||||||||||||||||||    
T  26346 tatcatttccaattcaatatattccactttacatttatgata 26387  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 321
Target Start/End: Original strand, 4475257 - 4475346
Alignment:
Q  232 ttaatactcattctatcatttccaatgcaatatcgtccactttacatttatgataaagataaatgtatcaatacttgataagaacactca 321  Q
    ||||||||  || ||||||||||||| ||| ||  |||||||| |||||||||||| | | |||| | |||||||||| ||| |||||||    
T  4475257 ttaatactacttttatcatttccaattcaacattttccactttgcatttatgataatggtgaatgcaccaatacttgacaaggacactca 4475346  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 5563039 - 5563080
Alignment:
Q  246 atcatttccaatgcaatatcgtccactttacatttatgataa 287  Q
    |||||||||||| ||||||  |||||||||||||||||||||    
T  5563039 atcatttccaattcaatatgttccactttacatttatgataa 5563080  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 314
Target Start/End: Original strand, 25869716 - 25869776
Alignment:
Q  254 caatgcaatatcgtccactttacatttatgataa-agataaatgtatcaatacttgataaga 314  Q
    |||||||||||  || |||||||||||||||||| ||| |||||||||||||||| ||||||    
T  25869716 caatgcaatatattctactttacatttatgataataga-aaatgtatcaatacttaataaga 25869776  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 309
Target Start/End: Complemental strand, 28706680 - 28706643
Alignment:
Q  272 tttacatttatgataaagataaatgtatcaatacttga 309  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  28706680 tttacatttatgataaagaaaaatgcatcaatacttga 28706643  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 317
Target Start/End: Original strand, 40061864 - 40061905
Alignment:
Q  276 catttatgataaagataaatgtatcaatacttgataagaaca 317  Q
    |||||||||||| || ||||||| ||||||||||||||||||    
T  40061864 catttatgataatgaaaaatgtaacaatacttgataagaaca 40061905  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 309
Target Start/End: Complemental strand, 12267707 - 12267651
Alignment:
Q  253 ccaatgcaatatcgtccactttacatttatgataaagataaatgtatcaatacttga 309  Q
    ||||| ||||||  || |||||||||||||||||||||  |||||| ||||||||||    
T  12267707 ccaattcaatatattctactttacatttatgataaagaagaatgtaccaatacttga 12267651  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 321
Target Start/End: Original strand, 9724910 - 9724978
Alignment:
Q  253 ccaatgcaatatcgtccactttacatttatgataaagataaatgtatcaatacttgataagaacactca 321  Q
    ||||| ||||||  || |||||||||||||||||||||  |||| | ||||||||||||| | ||||||    
T  9724910 ccaattcaatatattctactttacatttatgataaagaagaatgcaccaatacttgataaaagcactca 9724978  T

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