View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14649_high_15 (Length: 443)
Name: NF14649_high_15
Description: NF14649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14649_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 124 - 429
Target Start/End: Complemental strand, 42763348 - 42763043
Alignment:
| Q |
124 |
acaggtgtttggccagaatccaagagttttagtgacgaaggatttggactgatcccaaaaaagtggcgtggaatctgtcaagttactaaaggaaatccag |
223 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42763348 |
acaggtgtttggccagaatccaagagttttagtgacgaaggatttggactgatcccaaaaaagtggcgtggaatctgtcaagttactaaaggaaatccag |
42763249 |
T |
|
| Q |
224 |
ataactttcactgcaataggtcttttcttgtaacgacattaaatcattcagaatttgctatggttttttaaaaactaatctttacaaattatgatggtaa |
323 |
Q |
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|||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42763248 |
ataactttcactgcaacaggtctttccttgtaacgacattaaatcatttagaatttgctatggttttttaaaaactaatctttacaaattatgatggtaa |
42763149 |
T |
|
| Q |
324 |
acgtttaagcttcagaagatatacaagtttaaattgagcttagtatatcaccatgatttggattataatacataataaaaccaatttaattgtctttgat |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42763148 |
acgtttaagcttcagaagatatacaagtttaaattgagcttagtatataaccatgatttggattataatacataataaaaccaatttaattgtctttgat |
42763049 |
T |
|
| Q |
424 |
atattt |
429 |
Q |
| |
|
|||||| |
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|
| T |
42763048 |
atattt |
42763043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 295 - 425
Target Start/End: Original strand, 42734310 - 42734440
Alignment:
| Q |
295 |
aaactaatctttacaaattatgatggtaaacgtttaagcttcagaagatatacaagtttaaattgagcttagtatatcaccatgatttggattataatac |
394 |
Q |
| |
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|||||||||||||||||||||||| ||||| ||||||| |||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42734310 |
aaactaatctttacaaattatgatagtaaatgtttaagattcaccatatatgcaagtttaaattgagcttagtatatcaccatgatttggattataatac |
42734409 |
T |
|
| Q |
395 |
ataataaaaccaatttaattgtctttgatat |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
42734410 |
ataataaaaccaatttaattgtctttgatat |
42734440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 126 - 247
Target Start/End: Original strand, 42733425 - 42733546
Alignment:
| Q |
126 |
aggtgtttggccagaatccaagagttttagtgacgaaggatttggactgatcccaaaaaagtggcgtggaatctgtcaagttactaaaggaaatccagat |
225 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||| | ||||| ||||| ||||||||||| |||||||||| |||||| ||||||||| |
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| T |
42733425 |
aggtgtttggccagaatcaaagagttttagtgatgaaggatttgggccaatccccaaaaaatggcgtggaatttgtcaagttattaaaggcaatccagat |
42733524 |
T |
|
| Q |
226 |
aactttcactgcaataggtctt |
247 |
Q |
| |
|
|||||||| ||||| ||||||| |
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|
| T |
42733525 |
aactttcattgcaacaggtctt |
42733546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 124 - 246
Target Start/End: Complemental strand, 42744304 - 42744182
Alignment:
| Q |
124 |
acaggtgtttggccagaatccaagagttttagtgacgaaggatttggactgatcccaaaaaagtggcgtggaatctgtcaagttactaaaggaaatccag |
223 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||| ||| | || || |||||||||| ||||| |||||| ||||||||||||||| | |
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|
| T |
42744304 |
acaggtgtttggccagaatctaagagttttagtgatgaaggatatggtccaattcctaaaaagtggcatggaacttgtcaaactactaaaggaaatcccg |
42744205 |
T |
|
| Q |
224 |
ataactttcactgcaataggtct |
246 |
Q |
| |
|
|||||||||||||||| |||||| |
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|
| T |
42744204 |
ataactttcactgcaacaggtct |
42744182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 124 - 246
Target Start/End: Complemental strand, 42753663 - 42753541
Alignment:
| Q |
124 |
acaggtgtttggccagaatccaagagttttagtgacgaaggatttggactgatcccaaaaaagtggcgtggaatctgtcaagttactaaaggaaatccag |
223 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||| ||| | || || |||||||||| ||||| |||||| ||||||||||||||| | |
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|
| T |
42753663 |
acaggtgtttggccagaatctaagagttttagtgatgaaggatatggtccaattcctaaaaagtggcatggaacttgtcaaactactaaaggaaatcccg |
42753564 |
T |
|
| Q |
224 |
ataactttcactgcaataggtct |
246 |
Q |
| |
|
|||||||||||||||| |||||| |
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|
| T |
42753563 |
ataactttcactgcaacaggtct |
42753541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 42763471 - 42763414
Alignment:
| Q |
1 |
ttgaaatctaaaattatcttcggttgaaatatgattgattgcttaattatatagtata |
58 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42763471 |
ttgaaatctaaaattatcttcggttgaaatatgattgattgcttaattatatagtata |
42763414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 126 - 244
Target Start/End: Complemental strand, 42717670 - 42717552
Alignment:
| Q |
126 |
aggtgtttggccagaatccaagagttttagtgacgaaggatttggactgatcccaaaaaagtggcgtggaatctgtcaagttactaaaggaaatccagat |
225 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| ||||| | |||| ||||||||||| |||| |||||| ||||||||| |||| ||||| |||| |
|
|
| T |
42717670 |
aggtgtttggcctgaatccaagagtttcagtgatgaagggatgggaccaatcccaaaaaaatggcatggaatttgtcaagttgataaacaaaatcaagat |
42717571 |
T |
|
| Q |
226 |
aactttcactgcaataggt |
244 |
Q |
| |
|
|| ||| |||||| |||| |
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|
| T |
42717570 |
aaatttttctgcaacaggt |
42717552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 124 - 249
Target Start/End: Original strand, 23039796 - 23039921
Alignment:
| Q |
124 |
acaggtgtttggccagaatccaagagttttagtgacgaaggatttggactgatcccaaaaaagtggcgtggaatctgtcaagttactaaaggaaatccag |
223 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||| ||||||| ||| | ||||| |||||||||| ||||| |||||| | ||||||| ||||||| |
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| T |
23039796 |
acaggtgtttggccagaatctaagagttttaatgatgaaggatatggtccaatccctaaaaagtggcatggaacttgtcaaactgctaaagggaatccag |
23039895 |
T |
|
| Q |
224 |
ataactttcactgcaataggtctttt |
249 |
Q |
| |
|
|||||||||||||||| ||||||||| |
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|
| T |
23039896 |
ataactttcactgcaacaggtctttt |
23039921 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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