View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14649_high_18 (Length: 424)
Name: NF14649_high_18
Description: NF14649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14649_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 1977798 - 1978205
Alignment:
| Q |
1 |
taaagattcaacaggttgttttagaagtttacctcctggaagattggatatgattttccatggaaactttacaagcactttcaaaggtcttgatacaacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1977798 |
taaagattcaacaggttgttttagaagtttacctcctggaagattggatatgattttccatggaaactttacaagcactttcaaaggtcttgatacaacc |
1977897 |
T |
|
| Q |
101 |
ctgttgagtgatttcatgggtcctttgatatgttttgaaagaatcctccatatttcatcgaatggttgcttaacataactagactcaccttttgaatttt |
200 |
Q |
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| T |
1977898 |
ctgttgagtgatttcatgggtcctttgatatgttttgaaagaatcctccatatttcattgaatggttgcttaacataactagactcaccttttgaatttt |
1977997 |
T |
|
| Q |
201 |
catcttcacctttgtcttgttcctcttcttgttgaatctcaacatcaatagtaacgttgtgtaccgtttctaatttaggcacaatcatgtcatacaaaaa |
300 |
Q |
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| T |
1977998 |
catcttcacctttgtcttgttcctcttcttgttgaatctcaacatcaatagtaacgtcgtttcctgtttctaatttaggcacaatcatgtcgtaaaaaaa |
1978097 |
T |
|
| Q |
301 |
atcaagcaaatgtgcactttcatagactttaatgcttggaaacttttcaatcatcttgaaaggtgaagtttgttttaacaaacctataaacatgaaaatc |
400 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1978098 |
atcaagcaaatgtgcactttcggagactttaatgcttggaaacttttcaatcatcttgaaaggtgaagtttgtttaaacaaacctataaacatgaaaatc |
1978197 |
T |
|
| Q |
401 |
aacatttc |
408 |
Q |
| |
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|||||||| |
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| T |
1978198 |
aacatttc |
1978205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 1948611 - 1948201
Alignment:
| Q |
1 |
taaagattcaacaggttgttttagaagtttacctcctggaagattggatatgattttccatggaaactttacaagcactttcaaaggtcttgatacaa-- |
98 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1948611 |
taaagattcaataggttgttttagaagtttacctcctggaagattgcttatgattttccatggaaactttacaagcactttcaaaggtcttgatacaaga |
1948512 |
T |
|
| Q |
99 |
-ccctgttgagtgatttcatgggtcctttgatatgttttgaaagaatcctccatatttcatcgaatggttgcttaacataactagactcaccttttgaat |
197 |
Q |
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|||| |||||||||||||||||||||||| || ||||||||||||||||||| ||||||| || || ||| |||||||||||||||||||||||||||| |
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| T |
1948511 |
acccttttgagtgatttcatgggtcctttgttaagttttgaaagaatcctccaaatttcattgagtgattgtttaacataactagactcaccttttgaat |
1948412 |
T |
|
| Q |
198 |
tttcatcttcacctttgtcttgttcctcttcttgttgaatctcaacatcaatagtaacgttgtgtaccgtttctaatttaggcacaatcatgtcatacaa |
297 |
Q |
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| T |
1948411 |
tttcatcttcacctttgtcttgttcctcttcttgttgaatttcaacatcaatagtaacgtcgtttcctgtttctaatttaggcacaatcatgtcgtaaaa |
1948312 |
T |
|
| Q |
298 |
aaaatcaagcaaatgtgcactttcatagactttaatgcttggaaacttttcaatcatcttgaaaggtgaagtttgttttaacaaacctataaacatgaaa |
397 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1948311 |
aaaatcaagcaaatgtgcactttcggagactttaatgcttggaaactcttcaatcatcttgaaaggtgaagtttgtttaaacaaacctataaacatgaaa |
1948212 |
T |
|
| Q |
398 |
atcaacatttc |
408 |
Q |
| |
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||||||||||| |
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| T |
1948211 |
atcaacatttc |
1948201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 267 - 404
Target Start/End: Original strand, 1984979 - 1985116
Alignment:
| Q |
267 |
tttctaatttaggcacaatcatgtcatacaaaaaatcaagcaaatgtgcactttcatagactttaatgcttggaaacttttcaatcatcttgaaaggtga |
366 |
Q |
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|||||||||| |||||||||||||||||||||||||| ||||||||||||| || |||||| |||| | ||| ||| ||||| |||||| || ||||| |
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| T |
1984979 |
tttctaattttggcacaatcatgtcatacaaaaaatctagcaaatgtgcacactctaagacttgaatgttaggatactcttcaaacatcttaaagggtga |
1985078 |
T |
|
| Q |
367 |
agtttgttttaacaaacctataaacatgaaaatcaaca |
404 |
Q |
| |
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| | | ||| ||||| | |||| |||| || ||||||| |
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| T |
1985079 |
aatctctttaaacaaccttatacacatcaatatcaaca |
1985116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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