View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14649_high_19 (Length: 422)
Name: NF14649_high_19
Description: NF14649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14649_high_19 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 216 - 402
Target Start/End: Complemental strand, 236442 - 236256
Alignment:
| Q |
216 |
aaaatagtgttcaaaacacatgcaacggaataaagtttggatctattttgtgtataaattataaaattataaattagatactaaaagtgtacctttgtat |
315 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
236442 |
aaaatagtgttcataacacatgcaacggaataaagtttggatctattttgcgcttaaattataaaattataaattagatactaaaagtgtacctttgtat |
236343 |
T |
|
| Q |
316 |
caatttttgaagtatgaaaaattcgtaaatgatatgaagactctccgtgtatccacaccgagaccaattcttacccttaacctttga |
402 |
Q |
| |
|
||||| |||||| ||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
236342 |
caattcttgaagcatgaaaaattcttcaatgatatgaagactctacgtgtatccacaccgagaccaattcttaccctcaacctttga |
236256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 212 - 402
Target Start/End: Complemental strand, 40053874 - 40053684
Alignment:
| Q |
212 |
agtaaaaatagtgttcaaaacacatgcaacggaataaagtttggatctattttgtgtataaattataaaattataaattagatactaaaagtgtaccttt |
311 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
40053874 |
agtaaaaatagtgttcataacacatgcaacagaataaagtttggatctattttgcgcttaaattataaaattgtaaattagatactaaaagtgtaccttt |
40053775 |
T |
|
| Q |
312 |
gtatcaatttttgaagtatgaaaaattcgtaaatgatatgaagactctccgtgtatccacaccgagaccaattcttacccttaacctttga |
402 |
Q |
| |
|
||||||||| |||||| ||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
40053774 |
gtatcaattcttgaagcatgaaaaattcttcaatgatatgaagactctacgtgtatccacaccgagaccaattcttaccctcaacctttga |
40053684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 212 - 402
Target Start/End: Original strand, 40052412 - 40052602
Alignment:
| Q |
212 |
agtaaaaatagtgttcaaaacacatgcaacggaataaagtttggatctattttgtgtataaattataaaattataaattagatactaaaagtgtaccttt |
311 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||||| | |||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
40052412 |
agtaaaaatagtgttcataacacatgcaacagaataaagtttggatctattttgcgcttaaattataaaattgtaaattagatacaaaaagtgtaccttt |
40052511 |
T |
|
| Q |
312 |
gtatcaatttttgaagtatgaaaaattcgtaaatgatatgaagactctccgtgtatccacaccgagaccaattcttacccttaacctttga |
402 |
Q |
| |
|
||||||||| |||||| ||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
40052512 |
gtatcaattcttgaagcatgaaaaattcttcaatgatatgaagactctacgtgtatccacaccgagaccaattcttaccctcaacctttga |
40052602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 212 - 402
Target Start/End: Complemental strand, 39220491 - 39220302
Alignment:
| Q |
212 |
agtaaaaatagtgttcaaaacacatgcaacggaataaagtttggatctattttgtgtataaattataaaattataaattagatactaaaagtgtaccttt |
311 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39220491 |
agtaaaaaaggtgttcataacacatgcaacggaataaagtttggatctattttgcgcataaattataaaattataaattagatactaaaagtgtaccttt |
39220392 |
T |
|
| Q |
312 |
gtatcaatttttgaagtatgaaaaattcgtaaatgatatgaagactctccgtgtatccacaccgagaccaattcttacccttaacctttga |
402 |
Q |
| |
|
||||||||| |||||| ||| ||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
39220391 |
gtatcaattcttgaagcatg-aaaattcttcaatgatatgaagactctacgtgtatccacaccgagaccaattcttactctcaacctttga |
39220302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 212 - 402
Target Start/End: Original strand, 47113087 - 47113279
Alignment:
| Q |
212 |
agtaaaaatagtgttcaaaacacatgcaac---ggaataaagtttggatctattttgtgtataaattataaaattataaattagatactaaaagtgtacc |
308 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47113087 |
agtaaaaatagtgtttaaaacacatgcaacaacggaataaagtttggatctattttgcgcataaattataaaattataaattagatactaaaagtgtacc |
47113186 |
T |
|
| Q |
309 |
tttgtatcaatttttgaagtatgaaaaattcgtaaatgatatgaagactctccgtgtatccacaccgagaccaattcttacccttaacctttga |
402 |
Q |
| |
|
|||||||||||| |||||| ||| ||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
47113187 |
tttgtatcaattcttgaagcatg-aaaattcttcaatgatatgaagactctatgtgtatccacaccgagaccaattcttaccctcaacctttga |
47113279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 212 - 402
Target Start/End: Complemental strand, 39227019 - 39226828
Alignment:
| Q |
212 |
agtaaaaatagtgttcaaaacacatgcaacggaataaagtttggatctattttgtgtataaattataaaatt--ataaattagatactaaaagtgtacct |
309 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
39227019 |
agtaaaaaaggtgttcataacacatgcaacggaataaagtttggatctattttgcgcataaattataaaatttacgaaattagatactaaaagtgtacct |
39226920 |
T |
|
| Q |
310 |
ttgtatcaatttttgaagtatgaaaaattcgtaaatgatatgaagactctccgtgtatccacaccgagaccaattcttacccttaacctttga |
402 |
Q |
| |
|
||||||||||| |||||| ||| ||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
39226919 |
ttgtatcaattcttgaagcatg-aaaattcttcaatgatatgaagactctacgtgtatccacaccgagaccaattcttactctcaacctttga |
39226828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 146; Significance: 9e-77; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 212 - 400
Target Start/End: Original strand, 5910954 - 5911142
Alignment:
| Q |
212 |
agtaaaaatagtgttcaaaacacatgcaacggaataaagtttggatctattttgtgtataaattataaaa-ttataaattagatactaaaagtgtacctt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5910954 |
agtaaaaatagtgttcaaaacacatgcaacggaataaagtttggatctattttgcgtataaattataaaatttataaattagatactaaaagtgtacctt |
5911053 |
T |
|
| Q |
311 |
tgtatcaatttttgaagtatgaaaaattcgtaaatgatatgaagactctccgtgtatccacaccgagaccaattcttacccttaaccttt |
400 |
Q |
| |
|
|||||||||| |||||| ||| ||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5911054 |
tgtatcaattcttgaagcatg-aaaattcttcaatgatatgaagactctacgtgtatccacaccgagaccaattcttaccctcaaccttt |
5911142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 212 - 402
Target Start/End: Original strand, 35417120 - 35417310
Alignment:
| Q |
212 |
agtaaaaatagtgttcaaaacacatgcaacggaataaagtttggatctattttgtgtataaattataaaa-ttataaattagatactaaaagtgtacctt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
35417120 |
agtaaaaatagtgttcaaaacacatgcaacggaataaagtttggatctattttgcgcataaattataaaatttataaattagatactaaaagtgtacctt |
35417219 |
T |
|
| Q |
311 |
tgtatcaatttttgaagtatgaaaaattcgtaaatgatatgaagactctccgtgtatccacaccgagaccaattcttacccttaacctttga |
402 |
Q |
| |
|
|||||||||| |||||| ||| ||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
35417220 |
tgtatcaattcttgaagcatg-aaaattcttcaatgatatgaagactctacgtgtatccacaccgagaccaattcttaccctcaacctttga |
35417310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 212 - 402
Target Start/End: Complemental strand, 38486636 - 38486446
Alignment:
| Q |
212 |
agtaaaaatagtgttcaaaacacatgcaacggaataaagtttggatctattttgtgtataaattataaaattataaattagatactaaaagtgtaccttt |
311 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38486636 |
agtaaaactagtgttcataacacatgcaacggaataaagtttggatctattttgcgcttaaattataaaattgtaaattagatactaaaagtgtaccttt |
38486537 |
T |
|
| Q |
312 |
gtatcaatttttgaagtatgaaaaattcgtaaatgatatgaagactctccgtgtatccacaccgagaccaattcttacccttaacctttga |
402 |
Q |
| |
|
||||||||| |||||| ||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38486536 |
gtatcaattcttgaagcatgaaaaattcttcaatgatatgaagactctacgtgtatccacaccgagaccaattcttaccctcaacctttga |
38486446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 212 - 402
Target Start/End: Original strand, 5917902 - 5918092
Alignment:
| Q |
212 |
agtaaaaatagtgttcaaaacacatgcaacggaataaagtttggatctattttgtgtataaattataaaa-ttataaattagatactaaaagtgtacctt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
5917902 |
agtaaaaatagtgttcaaaacacatgcaacggaataaagtttggatctattttgcatataaattataaaatttataaattagatactaaaagtgtacttt |
5918001 |
T |
|
| Q |
311 |
tgtatcaatttttgaagtatgaaaaattcgtaaatgatatgaagactctccgtgtatccacaccgagaccaattcttacccttaacctttga |
402 |
Q |
| |
|
|||||||||| |||||| ||| ||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5918002 |
tgtatcaattcttgaagcatg-aaaattcttcaatgatatgaagactctacgtgtatccacaccgagaccaattcttaccctcaacctttga |
5918092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 212 - 402
Target Start/End: Complemental strand, 6751525 - 6751335
Alignment:
| Q |
212 |
agtaaaaatagtgttcaaaacacatgcaacggaataaagtttggatctattttgtgtataaattataaaa-ttataaattagatactaaaagtgtacctt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6751525 |
agtaaaaatagtgttcaaaacacatgcaacggaataaagtttggatctattttgcgcataaattataaaatttataaattagatactaaaagtgtacctt |
6751426 |
T |
|
| Q |
311 |
tgtatcaatttttgaagtatgaaaaattcgtaaatgatatgaagactctccgtgtatccacaccgagaccaattcttacccttaacctttga |
402 |
Q |
| |
|
|||||||||| |||||| ||| ||||||| | |||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6751425 |
tgtatcaattcttgaagcatg-aaaattcttcaatgatataaagactctatgtgtatccacaccgagaccaattcttaccctcaacctttga |
6751335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 212 - 402
Target Start/End: Original strand, 36100063 - 36100251
Alignment:
| Q |
212 |
agtaaaaatagtgttcaaaacacatgcaacggaataaagtttggatctattttgtgtataaattataaaattataaattagatactaaaagtgtaccttt |
311 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
36100063 |
agtaaaaatagtgttcataacacatgcaacggaataaagtttggatctattttgcgcataaattat-aaattataaattaaatactaaaagtgtaccttt |
36100161 |
T |
|
| Q |
312 |
gtatcaatttttgaagtatgaaaaattcgtaaatgatatgaagactctccgtgtatccacaccgagaccaattcttacccttaacctttga |
402 |
Q |
| |
|
||||||||| |||||| ||| ||||||| | ||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
36100162 |
gtatcaattcttgaagcatg-aaaattcttcaatgatatgaagactctacatgtatccacaccgagaccaattcttaccctcaacctttga |
36100251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 212 - 402
Target Start/End: Original strand, 41193932 - 41194123
Alignment:
| Q |
212 |
agtaaaaatagtgttca-aaacacatgcaacggaataaagtttggatctattttgtgtataaattataaaattataaattagatactaaaagtgtacctt |
310 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||| | || |
|
|
| T |
41193932 |
agtaaaaatagtgttcataaacacatgtaacggaataaagtttggatctattttgcacttaaattataaaattataaatttgatattaaaagtgtgcatt |
41194031 |
T |
|
| Q |
311 |
tgtatcaatttttgaagtatgaaaaattcgtaaatgatatgaagactctccgtgtatccacaccgagaccaattcttacccttaacctttga |
402 |
Q |
| |
|
|||||||||| || ||| ||||||||||| | || ||| |||||||||| ||||||| ||||||||| |||||||||| || ||||||||| |
|
|
| T |
41194032 |
tgtatcaattcttaaagcatgaaaaattctttaaagatgtgaagactctaagtgtatctacaccgagatcaattcttactctcaacctttga |
41194123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 139; Significance: 1e-72; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 212 - 402
Target Start/End: Original strand, 29672593 - 29672783
Alignment:
| Q |
212 |
agtaaaaatagtgttcaaaacacatgcaacggaataaagtttggatctattttgtgtataaattataaaattataaattagatactaaaagtgtaccttt |
311 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
29672593 |
agtaaaactagtgttcataacacatgcaacggaataaagtttggatctattttgcgcttaaattataaaattgtaaattagatactaaaagtgtaccttt |
29672692 |
T |
|
| Q |
312 |
gtatcaatttttgaagtatgaaaaattcgtaaatgatatgaagactctccgtgtatccacaccgagaccaattcttacccttaacctttga |
402 |
Q |
| |
|
||||||||| |||||| ||||| ||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
29672693 |
gtatcaattcttgaagcatgaagaattcttcaatgatatgaagactctacgtgtatccacaccgagaccaattcttaccctcaacctttga |
29672783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 212 - 402
Target Start/End: Complemental strand, 10567799 - 10567608
Alignment:
| Q |
212 |
agtaaaaatagtgttcaaaacacatgcaacggaataaagtttggatctattttgtgtataaattataaaatt--ataaattagatactaaaagtgtacct |
309 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10567799 |
agtaaaaaaggtgttcataacacatgcaacggaataaagtttggatctattttgcgcataaattataaaatttacgaaattagatactaaaagtgtacct |
10567700 |
T |
|
| Q |
310 |
ttgtatcaatttttgaagtatgaaaaattcgtaaatgatatgaagactctccgtgtatccacaccgagaccaattcttacccttaacctttga |
402 |
Q |
| |
|
||||||||||| |||||| ||| ||||||| | ||||||||||||||||| |||||||||||||||||||||||| |||| || ||||||||| |
|
|
| T |
10567699 |
ttgtatcaattcttgaagcatg-aaaattcttcaatgatatgaagactctacgtgtatccacaccgagaccaatttttactctcaacctttga |
10567608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 212 - 402
Target Start/End: Complemental strand, 10571049 - 10570858
Alignment:
| Q |
212 |
agtaaaaatagtgttcaaaacacatgcaacggaataaagtttggatctattttgtgtataaattataaaatt--ataaattagatactaaaagtgtacct |
309 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10571049 |
agtaaaaaaggtgttcataacacatgcaacggaataaagtttggatctattttgcgcataaattataaaatttacgaaattagatactaaaagtgtacct |
10570950 |
T |
|
| Q |
310 |
ttgtatcaatttttgaagtatgaaaaattcgtaaatgatatgaagactctccgtgtatccacaccgagaccaattcttacccttaacctttga |
402 |
Q |
| |
|
||||||||||| |||||| ||| ||||||| | ||||||||||||||||| |||||||||||||||||||||||| |||| || ||||||||| |
|
|
| T |
10570949 |
ttgtatcaattcttgaagcatg-aaaattcttcaatgatatgaagactctacgtgtatccacaccgagaccaatttttactctcaacctttga |
10570858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 215 - 402
Target Start/End: Complemental strand, 20283999 - 20283812
Alignment:
| Q |
215 |
aaaaatagtgttcaaaacacatgcaacggaataaagtttggatctattttgtgtataaattataaaattataaatta-gatactaaaagtgtacctttgt |
313 |
Q |
| |
|
|||| ||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||| | || |||| ||||| | |||||||||||||| |
|
|
| T |
20283999 |
aaaagtagtgttcataacaaatgcaacggaataaagtttggatctattttgcacttaaattataaaaat-tatattaagatacaagaagtgtacctttgt |
20283901 |
T |
|
| Q |
314 |
atcaatttttgaagtatgaaaaattcgtaaatgatatgaagactctccgtgtatccacaccgagaccaattcttacccttaacctttga |
402 |
Q |
| |
|
||||||| |||||| ||||||||||| | ||||||||||||||||| ||| |||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
20283900 |
atcaattcttgaagcatgaaaaattcttcaatgatatgaagactctacgtatatccacaccgagaccaattcttaccctcagcctttga |
20283812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 305 - 405
Target Start/End: Original strand, 21560082 - 21560182
Alignment:
| Q |
305 |
tacctttgtatcaatttttgaagtatgaaaaattcgtaaatgatatgaagactctccgtgtatccacaccgagaccaattcttacccttaacctttgaat |
404 |
Q |
| |
|
|||||| |||| | |||||||||||| |||| ||| | || ||| |||| ||| | ||||||||||| |||||||||||||||||||| || |||||||| |
|
|
| T |
21560082 |
taccttcgtattagtttttgaagtataaaaatttctttaaagatgtgaaaactttacgtgtatccacgccgagaccaattcttaccctcaatctttgaat |
21560181 |
T |
|
| Q |
405 |
a |
405 |
Q |
| |
|
| |
|
|
| T |
21560182 |
a |
21560182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 366 - 402
Target Start/End: Complemental strand, 8547352 - 8547316
Alignment:
| Q |
366 |
atccacaccgagaccaattcttacccttaacctttga |
402 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8547352 |
atccacaccgagaccaattcttaccctcaacctttga |
8547316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 212 - 402
Target Start/End: Original strand, 16860180 - 16860370
Alignment:
| Q |
212 |
agtaaaaatagtgttcaaaacacatgcaacggaataaagtttggatctattttgtgtataaattataaaattataaattagatactaaaagtgtaccttt |
311 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
16860180 |
agtaaaactagtgttcataacacatgcaacggaataaagtttggatctattttgcgcttaaattataaaattgtaaattagatactaaaagtgtaccttt |
16860279 |
T |
|
| Q |
312 |
gtatcaatttttgaagtatgaaaaattcgtaaatgatatgaagactctccgtgtatccacaccgagaccaattcttacccttaacctttga |
402 |
Q |
| |
|
||||||||| |||||| ||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
16860280 |
gtatcaattcttgaagcatgaaaaattcttcaatgatatgaagactctacgtgtatccacaccgagaccaattcttacgctcaacctttga |
16860370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 23 - 202
Target Start/End: Complemental strand, 39488737 - 39488558
Alignment:
| Q |
23 |
aaaaatttggggagtaccgtagcttcggttggtcccctttttagctccatccggaatcaaaattaatattgatggctcagctagggacaaaccttcaatt |
122 |
Q |
| |
|
|||| ||||||||||||| |||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39488737 |
aaaattttggggagtaccatagcttcggttgatcccctttctagctccatccccgatcaaaattaatattgatggctcagctagggacaaaccttcaatt |
39488638 |
T |
|
| Q |
123 |
gttgcttgtggagccatgttttgtgaatctagagctacacttttgttggttgtttctctgataattgtcttttaaaaaat |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| || ||||||| |
|
|
| T |
39488637 |
gttgcttgtggagccatgttttgtgaatctagagctacacttttgttagttgtgtctctcataattgtcgttcaaaaaat |
39488558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 212 - 392
Target Start/End: Complemental strand, 19406280 - 19406101
Alignment:
| Q |
212 |
agtaaaaatagtgttcaaaacacatgcaacggaataaagtttggatctattttgtgtataaattataaaattataaattagatactaaaagtgtaccttt |
311 |
Q |
| |
|
||||||||||||||||| |||||| ||| | ||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
19406280 |
agtaaaaatagtgttcataacacacgcagcagaataaagtttggatctattttgcgcttaaattataaa-ttataaattagatactaaaagtgtaccttt |
19406182 |
T |
|
| Q |
312 |
gtatcaatttttgaagtatgaaaaattcgtaaatgatatgaagactctccgtgtatccacaccgagaccaattcttaccct |
392 |
Q |
| |
|
||||||||| |||||| ||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
19406181 |
gtatcaattcttgaagcatgaaaaattcttcaatgatatgaagactctacgtgtatccacaccgagaccaattcttaccct |
19406101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 281 - 402
Target Start/End: Complemental strand, 40772506 - 40772387
Alignment:
| Q |
281 |
attataaattagatactaaaagtgtacctttgtatcaatttttgaagtatgaaaaattcgtaaatgatatgaagactctccgtgtatccacaccgagacc |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||| | || ||| |||||||||| ||||||||||||| |||| |
|
|
| T |
40772506 |
attataaattagatactaaaagtgtacctttgtatcaattcttgaagcatgagaaattcttcaaagatgtgaagactctacgtgtatccacac--tgacc |
40772409 |
T |
|
| Q |
381 |
aattcttacccttaacctttga |
402 |
Q |
| |
|
|||||||||||| ||||||||| |
|
|
| T |
40772408 |
aattcttaccctcaacctttga |
40772387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 219 - 400
Target Start/End: Original strand, 26337604 - 26337785
Alignment:
| Q |
219 |
atagtgttcaaaacacatgcaacggaataaagtttggatctattttgtgtataaattat-aaaattataaattagatactaaaagtgtacctttgtatca |
317 |
Q |
| |
|
|||| ||||| ||||||| ||||||||| |||||| ||| ||||||| || |||||||| ||||||||| | ||||||| |||||| ||||||||||| | |
|
|
| T |
26337604 |
atagagttcataacacatccaacggaatgaagtttagatttattttgcgtttaaattataaaaattataga-tagatacaaaaagtatacctttgtataa |
26337702 |
T |
|
| Q |
318 |
atttttgaagtatgaaaaattcgtaaatgatatgaagactctccgtgtatccacaccgagaccaattcttacccttaaccttt |
400 |
Q |
| |
|
| | |||||| | |||||| | || ||| |||||||||| | ||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
26337703 |
actcttgaagcacgaaaaaaaattcaaagatgtgaagactctactggtatccacaccgagaccaattcttaacctcaaccttt |
26337785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 216 - 281
Target Start/End: Complemental strand, 40772953 - 40772888
Alignment:
| Q |
216 |
aaaatagtgttcaaaacacatgcaacggaataaagtttggatctattttgtgtataaattataaaa |
281 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
40772953 |
aaaatagtgttcacaacacatgcaacagaataaagtttggatctattttgcgcttaaattataaaa |
40772888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 276 - 388
Target Start/End: Complemental strand, 20471689 - 20471577
Alignment:
| Q |
276 |
ataaaattataaatt-agatactaaaagtgtacctttgtatcaatttttgaagtatgaaaaattcgtaaatgatatgaagactctccgtgtatccacacc |
374 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||||||| |||||| || |||||||| | || |||||||||||||| |||||||||||||| |
|
|
| T |
20471689 |
ataaaattataaatttagatattaaaagtgtacctttgtatcaattcttgaagcat-aaaaattcattaaagatatgaagactctacgtgtatccacacc |
20471591 |
T |
|
| Q |
375 |
gagaccaattctta |
388 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
20471590 |
gtgaccaattctta |
20471577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 284 - 402
Target Start/End: Original strand, 47018578 - 47018690
Alignment:
| Q |
284 |
ataaattagatactaaaagtgtacctttgtatcaatttttgaagtatgaaaaattcgtaaatgatatgaagactctccgtgtatccacaccgagaccaat |
383 |
Q |
| |
|
|||||||||||||||||| |||||||| |||| |||||| ||||||||||| | ||||||||||||||| | ||||||||||||||||| |||| |
|
|
| T |
47018578 |
ataaattagatactaaaa------ctttgtattaattcttgaagcatgaaaaattcttcaatgatatgaagactttaggtgtatccacaccgagatcaat |
47018671 |
T |
|
| Q |
384 |
tcttacccttaacctttga |
402 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
47018672 |
tcttaccctcaacctttga |
47018690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 402
Target Start/End: Complemental strand, 499887 - 499698
Alignment:
| Q |
213 |
gtaaaaatagtgttcaaaacacatgcaacggaataaagtttggatctattttgtgtataaattataaaat-tataaattagatactaaaagtgtaccttt |
311 |
Q |
| |
|
|||||||||||||||| || | ||| ||| |||||| |||||||| ||||||| | |||||||||||| |||| ||| ||||||||||||||| ||| |
|
|
| T |
499887 |
gtaaaaatagtgttcataagatatggaacagaataatgtttggatatattttgcgcttaaattataaaaactatat-ttaaatactaaaagtgtac-ttt |
499790 |
T |
|
| Q |
312 |
gtatcaattt-ttgaagtatgaaaaattcgtaaatgatatgaagactctccgtgtatccacaccgagaccaattcttacccttaacctttga |
402 |
Q |
| |
|
||| || || || ||| ||||||||||| || ||||||||||||| ||| |||| |||| |||||| ||||||| || ||||||||| |
|
|
| T |
499789 |
ctattaaattcttaaagcatgaaaaattctataaaaatatgaagactctacgtatatctacactaagaccagttcttacactcaacctttga |
499698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 276 - 402
Target Start/End: Complemental strand, 21593571 - 21593451
Alignment:
| Q |
276 |
ataaaattataaatt-agatactaaaagtgtacctttgtatcaatttttgaagtatgaaaaattcgtaaatgatatgaagactctccgtgtatccacacc |
374 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| | |||||||| |||||| || |||||||| | || |||||||||||| ||| |||||| |
|
|
| T |
21593571 |
ataaaattataaatttagatactaaaagtgtacctctatatcaattcttgaagcataaaaaattcttcaaagatatgaagact-------tatacacacc |
21593479 |
T |
|
| Q |
375 |
gagaccaattcttacccttaacctttga |
402 |
Q |
| |
|
||||||||||||||| || ||||||||| |
|
|
| T |
21593478 |
gagaccaattcttactctcaacctttga |
21593451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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